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Mass cytometric and transcriptomic profiling of epithelial-mesenchymal transitions in human mammary cell lines.
- Published in:
- Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01137-4
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- Publication type:
- Article
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer.
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- Nature Communications, 2023, v. 14, p. 1, doi. 10.1038/s41467-022-35238-w
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- Publication type:
- Article
Mechanistic Model of Signaling Dynamics Across an Epithelial Mesenchymal Transition.
- Published in:
- Frontiers in Physiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fphys.2020.579117
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- Article
IL‐8 and CXCR1 expression is associated with cancer stem cell‐like properties of clear cell renal cancer.
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- Journal of Pathology, 2019, v. 248, n. 3, p. 377, doi. 10.1002/path.5267
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- Publication type:
- Article
Ruthenium counterstaining for imaging mass cytometry.
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- Journal of Pathology, 2018, v. 244, n. 4, p. 479, doi. 10.1002/path.5049
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- Article
The Human Cell Atlas.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.27041
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- Article
Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry.
- Published in:
- Nature Biotechnology, 2017, v. 35, n. 2, p. 164, doi. 10.1038/nbt.3770
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- Publication type:
- Article
Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators.
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- Nature Biotechnology, 2012, v. 30, n. 9, p. 858, doi. 10.1038/nbt.2317
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- Article
PhosphoPep—a database of protein phosphorylation sites in model organisms.
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- Nature Biotechnology, 2008, v. 26, n. 12, p. 1339, doi. 10.1038/nbt1208-1339
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- Article
Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry.
- Published in:
- Nature Methods, 2014, v. 11, n. 4, p. 417, doi. 10.1038/nmeth.2869
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- Publication type:
- Article
Proteomics meets the scientific method.
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- Nature Methods, 2013, v. 10, n. 1, p. 24, doi. 10.1038/nmeth.2291
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- Article
Reproducible isolation of distinct, overlapping segments of the phosphoproteome.
- Published in:
- Nature Methods, 2007, v. 4, n. 3, p. 231, doi. 10.1038/nmeth1005
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- Publication type:
- Article
Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry.
- Published in:
- Nature Methods, 2005, v. 2, n. 8, p. 591, doi. 10.1038/nmeth776
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- Publication type:
- Article
cytomapper: an R/Bioconductor package for visualization of highly multiplexed imaging data.
- Published in:
- Bioinformatics, 2020, v. 36, n. 24, p. 5706, doi. 10.1093/bioinformatics/btaa1061
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- Publication type:
- Article
Microenvironmental reorganization in brain tumors following radiotherapy and recurrence revealed by hyperplexed immunofluorescence imaging.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47185-9
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- Publication type:
- Article
Comparative transcriptomics coupled to developmental grading via transgenic zebrafish reporter strains identifies conserved features in neutrophil maturation.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45802-1
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- Publication type:
- Article
Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40745-5
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- Publication type:
- Article
Cancer-associated fibroblast classification in single-cell and spatial proteomics data.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39762-1
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- Publication type:
- Article
cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data.
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- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-023-05546-z
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- Publication type:
- Article
SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.
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- Proteomics, 2007, v. 7, n. 19, p. 3470, doi. 10.1002/pmic.200700057
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- Article
Enhanced multiplexing in mass cytometry using osmium and ruthenium tetroxide species.
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- Cytometry. Part A, 2016, v. 89, n. 5, p. 491, doi. 10.1002/cyto.a.22848
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- Publication type:
- Article
Automatic single cell segmentation on highly multiplexed tissue images.
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- Cytometry. Part A, 2015, v. 87, n. 10, p. 936, doi. 10.1002/cyto.a.22702
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- Publication type:
- Article
A platinum-based covalent viability reagent for single-cell mass cytometry.
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- Cytometry. Part A, 2012, v. 81A, n. 6, p. 467, doi. 10.1002/cyto.a.22067
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- Article
Phosphorylation of residues inside the SNARE complex suppresses secretory vesicle fusion.
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- EMBO Journal, 2016, v. 35, n. 16, p. 1810, doi. 10.15252/embj.201694071
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- Article
Orm family proteins mediate sphingolipid homeostasis.
- Published in:
- Nature, 2010, v. 463, n. 7284, p. 1048, doi. 10.1038/nature08787
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- Publication type:
- Article
Stabilized Reconstruction of Signaling Networks from Single-Cell Cue-Response Data.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-019-56444-5
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- Publication type:
- Article
The calcineurin signaling network evolves via conserved kinase‐phosphatase modules that transcend substrate identity (586.3).
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- FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.586.3
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- Publication type:
- Article
Correction to: Limited utility of tissue micro-arrays in detecting intra-tumoral heterogeneity in stem cell characteristics and tumor progression markers in breast cancer.
- Published in:
- 2018
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- Publication type:
- journal article
Limited utility of tissue micro-arrays in detecting intra-tumoral heterogeneity in stem cell characteristics and tumor progression markers in breast cancer.
- Published in:
- 2018
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- Publication type:
- journal article
Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd.
- Published in:
- Molecular Systems Biology, 2021, v. 17, n. 10, p. 1, doi. 10.15252/msb.202110402
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- Publication type:
- Article
A quantitative analysis of the interplay of environment, neighborhood, and cell state in 3D spheroids.
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- Molecular Systems Biology, 2020, v. 16, n. 12, p. 1, doi. 10.15252/msb.20209798
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- Publication type:
- Article
PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells.
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- Molecular Systems Biology, 2007, v. 3, n. 1, p. 1, doi. 10.1038/msb4100182
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- Publication type:
- Article
Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy.
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- Science Immunology, 2022, v. 7, n. 70, p. 1, doi. 10.1126/sciimmunol.abk1692
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- Article
Hair eruption initiates and commensal skin microbiota aggravate adverse events of anti-EGFR therapy.
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- Science Translational Medicine, 2019, v. 11, n. 522, p. 1, doi. 10.1126/scitranslmed.aax2693
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- Article
AirLab: a cloud-based platform to manage and share antibody-based single-cell research.
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- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1006-0
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- Publication type:
- Article
CellCycleTRACER accounts for cell cycle and volume in mass cytometry data.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03005-5
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- Publication type:
- Article
T‐cell recovery and evidence of persistent immune activation 12 months after severe COVID‐19.
- Published in:
- Allergy, 2022, v. 77, n. 8, p. 2468, doi. 10.1111/all.15372
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- Publication type:
- Article
Cutaneous and systemic hyperinflammation drives maculopapular drug exanthema in severely ill COVID‐19 patients.
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- Allergy, 2022, v. 77, n. 2, p. 595, doi. 10.1111/all.14983
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- Publication type:
- Article
Profound dysregulation of T cell homeostasis and function in patients with severe COVID‐19.
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- Allergy, 2021, v. 76, n. 9, p. 2866, doi. 10.1111/all.14866
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- Publication type:
- Article
In-Depth Characterization of Monocyte-Derived Macrophages using a Mass Cytometry-Based Phagocytosis Assay.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-38127-9
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- Publication type:
- Article
Identification of an embryonic differentiation stage marked by Sox1 and FoxA2 co-expression using combined cell tracking and high dimensional protein imaging.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52069-z
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- Publication type:
- Article
Identification of an embryonic differentiation stage marked by Sox1 and FoxA2 co-expression using combined cell tracking and high dimensional protein imaging.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52069-z
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- Publication type:
- Article
An end-to-end workflow for multiplexed image processing and analysis.
- Published in:
- Nature Protocols, 2023, v. 18, n. 11, p. 3565, doi. 10.1038/s41596-023-00881-0
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- Publication type:
- Article
Learning time-varying information flow from single-cell epithelial to mesenchymal transition data.
- Published in:
- PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0203389
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- Publication type:
- Article
Phosphoproteomic Analysis Reveals Interconnected System-Wide Responses to Perturbations of Kinases and Phosphatases in Yeast.
- Published in:
- Science Signaling, 2010, v. 3, n. 153, p. 1, doi. 10.1126/scisignal.2001182
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- Publication type:
- Article
Comparative Analysis Reveals Conserved Protein Phosphorylation Networks Implicated in Multiple Diseases.
- Published in:
- Science Signaling, 2009, v. 2, n. 81, p. 1, doi. 10.1126/scisignal.2000316
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- Publication type:
- Article
Monogenic Diabetes and Integrated Stress Response Genes Display Altered Gene Expression in Type 1 Diabetes.
- Published in:
- 2021
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- Publication type:
- journal article