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The workshops on computational applications in secondary metabolite discovery (CAiSMD).
- Published in:
- Physical Sciences Reviews, 2024, v. 9, n. 10, p. 3289, doi. 10.1515/psr-2024-0015
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- Article
A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene Clusters.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 14, p. 7567, doi. 10.3390/ijms22147567
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- Article
The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D625, doi. 10.1093/nar/gky1060
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- Article
Patscanui: an intuitive web interface for searching patterns in DNA and protein data.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W205, doi. 10.1093/nar/gky321
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- Publication type:
- Article
The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. W1, p. W42, doi. 10.1093/nar/gkx360
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- Publication type:
- Article
antiSMASH 4.0--improvements in chemistry prediction and gene cluster boundary identification.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W36, doi. 10.1093/nar/gkx319
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- Publication type:
- Article
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W55, doi. 10.1093/nar/gkx305
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- Publication type:
- Article
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D555, doi. 10.1093/nar/gkw960
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- Publication type:
- Article
antiSMASH 3.0--a comprehensive resource for the genome mining of biosynthetic gene clusters.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W237, doi. 10.1093/nar/gkv437
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- Publication type:
- Article
DoRiNA 2.0—upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.
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- Nucleic Acids Research, 2015, v. 43, n. D1, p. D160, doi. 10.1093/nar/gku1180
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- Publication type:
- Article
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. W204, doi. 10.1093/nar/gkt449
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- Article
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W362, doi. 10.1093/nar/gkr323
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- Publication type:
- Article
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W339, doi. 10.1093/nar/gkr466
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- Publication type:
- Article
Improved Lanthipeptide Detection and Prediction for antiSMASH.
- Published in:
- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089420
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- Article
Proteomic Approach to Reveal the Regulatory Function of Aconitase AcnA in Oxidative Stress Response in the Antibiotic Producer <i>Streptomyces viridochromogenes</i> Tü494.
- Published in:
- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0087905
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- Publication type:
- Article
Sequence-based classification of type II polyketide synthase biosynthetic gene clusters for antiSMASH.
- Published in:
- Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 3/4, p. 469, doi. 10.1007/s10295-018-02131-9
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- Publication type:
- Article
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters.
- Published in:
- Briefings in Bioinformatics, 2019, p. 1103, doi. 10.1093/bib/bbx146
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- Publication type:
- Article
The bifunctional role of aconitase in Streptomyces viridochromogenes Tü494.
- Published in:
- Environmental Microbiology, 2012, v. 14, n. 12, p. 3203, doi. 10.1111/1462-2920.12006
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- Article
Dissemination of antibiotic resistance genes from antibiotic producers to pathogens.
- Published in:
- Nature Communications, 2017, v. 8, n. 6, p. 1, doi. 10.1038/ncomms15784
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- Article
Minimum Information about a Biosynthetic Gene cluster.
- Published in:
- Nature Chemical Biology, 2015, v. 11, n. 9, p. 625, doi. 10.1038/nchembio.1890
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- Article
Ten Simple Rules for Taking Advantage of Git and GitHub.
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- 2016
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- Publication type:
- Product Review
A treasure trove of 1034 actinomycete genomes.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 13, p. 7487, doi. 10.1093/nar/gkae523
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- Publication type:
- Article
The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D586, doi. 10.1093/nar/gkad984
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- Publication type:
- Article
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W46, doi. 10.1093/nar/gkad344
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- Article
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters.
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- Nucleic Acids Research, 2023, v. 51, n. D1, p. D603, doi. 10.1093/nar/gkac1049
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- Publication type:
- Article
ARTS-DB: a database for antibiotic resistant targets.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. D1, p. D736, doi. 10.1093/nar/gkab940
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- Publication type:
- Article
antiSMASH 6.0: improving cluster detection and comparison capabilities.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. W1, p. W29, doi. 10.1093/nar/gkab335
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- Article
The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D639, doi. 10.1093/nar/gkaa978
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- Article
BiG-FAM: the biosynthetic gene cluster families database.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D490, doi. 10.1093/nar/gkaa812
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- Publication type:
- Article
ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining.
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- Nucleic Acids Research, 2020, v. 48, n. W1, p. W546, doi. 10.1093/nar/gkaa374
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- Article
MIBiG 2.0: a repository for biosynthetic gene clusters of known function.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D454, doi. 10.1093/nar/gkz882
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- Article
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. W1, p. W81, doi. 10.1093/nar/gkz310
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- Publication type:
- Article
CRISPR–Cas9, CRISPRi and CRISPR-BEST-mediated genetic manipulation in streptomycetes.
- Published in:
- Nature Protocols, 2020, v. 15, n. 8, p. 2470, doi. 10.1038/s41596-020-0339-z
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- Article
Disclosing the Potential of the SARP-Type Regulator PapR2 for the Activation of Antibiotic Gene Clusters in Streptomycetes.
- Published in:
- Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00225
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- Article