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Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythm.
Published in:
eLife, 2017, p. 1, doi. 10.7554/eLife.31683
By:
- Yang, Xinan H.;
- Nadadur, Rangarajan D.;
- Hilvering, Catharina R. E.;
- Bianchi, Valerio;
- Werner, Michael;
- Mazurek, Stefan R.;
- Gadek, Margaret;
- Shen, Kaitlyn M.;
- Goldman, Joseph Aaron;
- Tyan, Leonid;
- Bekeny, Jenna;
- Hall, Johnathon M.;
- Lee, Nutishia;
- Perez-Cervantes, Carlos;
- Burnicka-Turek, Ozanna;
- Poss, Kenneth D.;
- Weber, Christopher R.;
- de Laat, Wouter;
- Ruthenburg, Alexander J.;
- Moskowitz, Ivan P.
Publication type:
Article
BAZ2A safeguards genome architecture of ground‐state pluripotent stem cells.
Published in:
EMBO Journal, 2020, v. 39, n. 23, p. 1, doi. 10.15252/embj.2020105606
By:
- Dalcher, Damian;
- Tan, Jennifer Yihong;
- Bersaglieri, Cristiana;
- Peña‐Hernández, Rodrigo;
- Vollenweider, Eva;
- Zeyen, Stefan;
- Schmid, Marc W;
- Bianchi, Valerio;
- Butz, Stefan;
- Roganowicz, Marcin;
- Kuzyakiv, Rostyslav;
- Baubec, Tuncay;
- Marques, Ana Claudia;
- Santoro, Raffaella
Publication type:
Article
Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions.
Published in:
Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00075
By:
- Bianchi, Valerio;
- Ceol, Arnaud;
- Ogier, Alessandro G. E.;
- De Pretis, Stefano;
- Galeota, Eugenia;
- Kishore, Kamal;
- Bora, Pranami;
- Croci, Ottavio;
- Campaner, Stefano;
- Amati, Bruno;
- Morelli, Marco J.;
- Pelizzola, Mattia
Publication type:
Article
An enhancer cluster controls gene activity and topology of the SCN5A-SCN10A locus in vivo.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12856-5
By:
- Man, Joyce C. K.;
- Mohan, Rajiv A.;
- Boogaard, Malou van den;
- Hilvering, Catharina R. E.;
- Jenkins, Catherine;
- Wakker, Vincent;
- Bianchi, Valerio;
- Laat, Wouter de;
- Barnett, Phil;
- Boukens, Bastiaan J.;
- Christoffels, Vincent M.
Publication type:
Article
DBATE: database of alternative transcripts expression.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat050
By:
- Bianchi, Valerio;
- Colantoni, Alessio;
- Calderone, Alberto;
- Ausiello, Gabriele;
- Ferre, Fabrizio;
- Helmer-Citterich, Manuela
Publication type:
Article
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0742-6
By:
- Kishore, Kamal;
- de Pretis, Stefano;
- Lister, Ryan;
- Morelli, Marco J.;
- Bianchi, Valerio;
- Amati, Bruno;
- Ecker, Joseph R.;
- Pelizzola, Mattia
Publication type:
Article
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0742-6
By:
- Kishore, Kamal;
- de Pretis, Stefano;
- Lister, Ryan;
- Morelli, Marco J.;
- Bianchi, Valerio;
- Amati, Bruno;
- Ecker, Joseph R.;
- Pelizzola, Mattia
Publication type:
Article
Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities.
Published in:
BMC Bioinformatics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2105-13-S4-S17
By:
- Bianchi, Valerio;
- Gherardini, Pier Federico;
- Helmer-Citterich, Manuela;
- Ausiello, Gabriele
Publication type:
Article
Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.
Published in:
Nature, 2014, v. 511, n. 7510, p. 488, doi. 10.1038/nature13537
By:
- Sabò, Arianna;
- Kress, Theresia R.;
- Pelizzola, Mattia;
- de Pretis, Stefano;
- Gorski, Marcin M.;
- Tesi, Alessandra;
- Morelli, Marco J.;
- Bora, Pranami;
- Doni, Mirko;
- Verrecchia, Alessandro;
- Tonelli, Claudia;
- Fagà, Giovanni;
- Bianchi, Valerio;
- Ronchi, Alberto;
- Low, Diana;
- Müller, Heiko;
- Guccione, Ernesto;
- Campaner, Stefano;
- Amati, Bruno
Publication type:
Article
Alternative splicing tends to avoid partial removals of protein-protein interaction sites.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-379
By:
- Colantoni, Alessio;
- Bianchi, Valerio;
- Gherardini, Pier Federico;
- Tomba, Gianpaolo Scalia;
- Ausiello, Gabriele;
- Helmer-Citterich, Manuela;
- Ferrè, Fabrizio
Publication type:
Article
Identification of miRNAs Involved in Stolon Formation in Tulipa edulis by High-Throughput Sequencing.
Published in:
Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00852
By:
- Zaibiao Zhu;
- Yuanyuan Miao;
- Qiaosheng Guo;
- Yunhao Zhu;
- Xiaohua Yang;
- Yuan Sun;
- Bianchi, Valerio;
- Kumar, Amar
Publication type:
Article
Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14269-w
By:
- Castelijns, Bas;
- Baak, Mirna L.;
- Timpanaro, Ilia S.;
- Wiggers, Caroline R. M.;
- Vermunt, Marit W.;
- Shang, Peng;
- Kondova, Ivanela;
- Geeven, Geert;
- Bianchi, Valerio;
- de Laat, Wouter;
- Geijsen, Niels;
- Creyghton, Menno P.
Publication type:
Article

Found: 12