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CloneSifter: enrichment of rare clones from heterogeneous cell populations.
Published in:
BMC Biology, 2020, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12915-020-00911-3
By:
- Feldman, David;
- Tsai, FuNien;
- Garrity, Anthony J.;
- O'Rourke, Ryan;
- Brenan, Lisa;
- Ho, Patricia;
- Gonzalez, Elizabeth;
- Konermann, Silvana;
- Johannessen, Cory M.;
- Beroukhim, Rameen;
- Bandopadhayay, Pratiti;
- Blainey, Paul C.
Publication type:
Article
Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions.
Published in:
2009
By:
- Sos, Martin L.;
- Michel, Kathrin;
- Zander, Thomas;
- Weiss, Jonathan;
- Frommolt, Peter;
- Peifer, Martin;
- Danan Li;
- Ullrich, Roland;
- Koker, Mirjam;
- Fischer, Florian;
- Shimamura, Takeshi;
- Rauh, Daniel;
- Mermel, Craig;
- Fischer, Stefanie;
- Stückrath, Isabel;
- Heynck, Stefanie;
- Beroukhim, Rameen;
- Lin, William;
- Winckler, Wendy;
- Shah, Kinjal
Publication type:
journal article
SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines.
Published in:
Nucleic Acids Research, 2008, v. 36, n. 7, p. 2446, doi. 10.1093/nar/gkn089
By:
- Demichelis, Francesca;
- Greulich, Heidi;
- Macoska, Jill A.;
- Beroukhim, Rameen;
- Sellers, William R.;
- Garraway, Levi;
- Rubin, Mark A.
Publication type:
Article
Haplotype-resolved germline and somatic alterations in renal medullary carcinomas.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00929-4
By:
- Tan, Kar-Tong;
- Kim, Hyunji;
- Carrot-Zhang, Jian;
- Zhang, Yuxiang;
- Kim, Won Jun;
- Kugener, Guillaume;
- Wala, Jeremiah A.;
- Howard, Thomas P.;
- Chi, Yueh-Yun;
- Beroukhim, Rameen;
- Li, Heng;
- Ha, Gavin;
- Alper, Seth L.;
- Perlman, Elizabeth J.;
- Mullen, Elizabeth A.;
- Hahn, William C.;
- Meyerson, Matthew;
- Hong, Andrew L.
Publication type:
Article
Absolute quantification of somatic DNA alterations in human cancer.
Published in:
Nature Biotechnology, 2012, v. 30, n. 5, p. 413, doi. 10.1038/nbt.2203
By:
- Carter, Scott L;
- Cibulskis, Kristian;
- Helman, Elena;
- McKenna, Aaron;
- Shen, Hui;
- Zack, Travis;
- Laird, Peter W;
- Onofrio, Robert C;
- Winckler, Wendy;
- Weir, Barbara A;
- Beroukhim, Rameen;
- Pellman, David;
- Levine, Douglas A;
- Lander, Eric S;
- Meyerson, Matthew;
- Getz, Gad
Publication type:
Article
Bead-based profiling of tyrosine kinase phosphorylation identifies SRC as a potential target for glioblastoma therapy.
Published in:
Nature Biotechnology, 2009, v. 27, n. 1, p. 77, doi. 10.1038/nbt.1513
By:
- Du, Jinyan;
- Bernasconi, Paula;
- Clauser, Karl R;
- Mani, D R;
- Finn, Stephen P;
- Beroukhim, Rameen;
- Burns, Melissa;
- Julian, Bina;
- Peng, Xiao P;
- Hieronymus, Haley;
- Maglathlin, Rebecca L;
- Lewis, Timothy A;
- Liau, Linda M;
- Nghiemphu, Phioanh;
- Mellinghoff, Ingo K;
- Louis, David N;
- Loda, Massimo;
- Carr, Steven A;
- Kung, Andrew L;
- Golub, Todd R
Publication type:
Article
Coordinate activation of Shh and PI3K signaling in PTEN-deficient glioblastoma: new therapeutic opportunities.
Published in:
Nature Medicine, 2013, v. 19, n. 11, p. 1518, doi. 10.1038/nm.3328
By:
- Gruber Filbin, Mariella;
- Dabral, Sukriti K;
- Pazyra-Murphy, Maria F;
- Ramkissoon, Shakti;
- Kung, Andrew L;
- Pak, Ekaterina;
- Chung, Jarom;
- Theisen, Matthew A;
- Sun, Yanping;
- Franchetti, Yoko;
- Sun, Yu;
- Shulman, David S;
- Redjal, Navid;
- Tabak, Barbara;
- Beroukhim, Rameen;
- Wang, Qi;
- Zhao, Jean;
- Dorsch, Marion;
- Buonamici, Silvia;
- Ligon, Keith L
Publication type:
Article
Oncogenic PIK3CA-driven mammary tumors frequently recur via PI3K pathway-dependent and PI3K pathway-independent mechanisms.
Published in:
Nature Medicine, 2011, v. 17, n. 9, p. 1116, doi. 10.1038/nm.2402
By:
- Liu, Pixu;
- Cheng, Hailing;
- Santiago, Stephanie;
- Raeder, Maria;
- Zhang, Fan;
- Isabella, Adam;
- Yang, Janet;
- Semaan, Derek J;
- Chen, Changzhong;
- Fox, Edward A;
- Gray, Nathanael S;
- Monahan, John;
- Schlegel, Robert;
- Beroukhim, Rameen;
- Mills, Gordon B;
- Zhao, Jean J
Publication type:
Article
An oncogene–tumor suppressor cascade drives metastatic prostate cancer by coordinately activating Ras and nuclear factor-κB.
Published in:
Nature Medicine, 2010, v. 16, n. 3, p. 286, doi. 10.1038/nm.2100
By:
- Junxia Min;
- Zaslavsky, Alexander;
- Fedele, Giuseppe;
- McLaughlin, Sara K.;
- Reczek, Elizabeth E.;
- De Raedt, Thomas;
- Guney, Isil;
- Strochlic, David E.;
- MacConaill, Laura E.;
- Beroukhim, Rameen;
- Bronson, Roderick T.;
- Ryeom, Sandra;
- Hahn, William C.;
- Loda, Massimo;
- Cichowski, Karen
Publication type:
Article
Orthotopic xenografts of RCC retain histological, immunophenotypic and genetic features of tumours in patients.
Published in:
Journal of Pathology, 2011, v. 225, n. 2, p. 212, doi. 10.1002/path.2929
By:
- Grisanzio, Chiara;
- Seeley, Apryle;
- Chang, Michelle;
- Collins, Michael;
- Di Napoli, Arianna;
- Cheng, Su-Chun;
- Percy, Andrew;
- Beroukhim, Rameen;
- Signoretti, Sabina
Publication type:
Article
Pan-cancer genetic analysis identifies PARK2 as a master regulator of G1/S cyclins.
Published in:
Nature Genetics, 2014, v. 46, n. 6, p. 588, doi. 10.1038/ng.2981
By:
- Gong, Yongxing;
- Zack, Travis Ian;
- Morris, Luc G T;
- Lin, Kan;
- Hukkelhoven, Ellen;
- Raheja, Radhika;
- Tan, I-Li;
- Turcan, Sevin;
- Veeriah, Selvaraju;
- Meng, Shasha;
- Viale, Agnes;
- Schumacher, Steven E;
- Palmedo, Perry;
- Beroukhim, Rameen;
- Chan, Timothy A
Publication type:
Article
Pan-cancer patterns of somatic copy number alteration.
Published in:
Nature Genetics, 2013, v. 45, n. 10, p. 1134, doi. 10.1038/ng.2760
By:
- Zack, Travis I;
- Schumacher, Steven E;
- Carter, Scott L;
- Cherniack, Andrew D;
- Saksena, Gordon;
- Tabak, Barbara;
- Lawrence, Michael S;
- Zhang, Cheng-Zhong;
- Wala, Jeremiah;
- Mermel, Craig H;
- Sougnez, Carrie;
- Gabriel, Stacey B;
- Hernandez, Bryan;
- Shen, Hui;
- Laird, Peter W;
- Getz, Gad;
- Meyerson, Matthew;
- Beroukhim, Rameen
Publication type:
Article
Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations.
Published in:
Nature Genetics, 2013, v. 45, n. 3, p. 285, doi. 10.1038/ng.2526
By:
- Brastianos, Priscilla K;
- Horowitz, Peleg M;
- Santagata, Sandro;
- Jones, Robert T;
- McKenna, Aaron;
- Getz, Gad;
- Ligon, Keith L;
- Palescandolo, Emanuele;
- Van Hummelen, Paul;
- Ducar, Matthew D;
- Raza, Alina;
- Sunkavalli, Ashwini;
- MacConaill, Laura E;
- Stemmer-Rachamimov, Anat O;
- Louis, David N;
- Hahn, William C;
- Dunn, Ian F;
- Beroukhim, Rameen
Publication type:
Article
Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis.
Published in:
Nature Genetics, 2011, v. 43, n. 9, p. 869, doi. 10.1038/ng.890
By:
- Locasale, Jason W.;
- Grassian, Alexandra R.;
- Melman, Tamar;
- Lyssiotis, Costas A.;
- Mattaini, Katherine R.;
- Bass, Adam J.;
- Heffron, Gregory;
- Metallo, Christian M.;
- Muranen, Taru;
- Sharfi, Hadar;
- Sasaki, Atsuo T.;
- Anastasiou, Dimitrios;
- Mullarky, Edouard;
- Vokes, Natalie I.;
- Sasaki, Mika;
- Beroukhim, Rameen;
- Stephanopoulos, Gregory;
- Ligon, Azra H.;
- Meyerson, Matthew;
- Richardson, Andrea L.
Publication type:
Article
Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy.
Published in:
Nature Genetics, 2010, v. 42, n. 8, p. 715, doi. 10.1038/ng.619
By:
- Barretina, Jordi;
- Taylor, Barry S.;
- Banerji, Shantanu;
- Ramos, Alexis H.;
- Lagos-Quintana, Mariana;
- DeCarolis, Penelope L.;
- Shah, Kinjal;
- Socci, Nicholas D.;
- Weir, Barbara A.;
- Ho, Alan;
- Chiang, Derek Y.;
- Reva, Boris;
- Mermel, Craig H.;
- Getz, Gad;
- Antipin, Yevgenyi;
- Beroukhim, Rameen;
- Major, John E.;
- Hatton, Charles;
- Nicoletti, Richard;
- Hanna, Megan
Publication type:
Article
SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas.
Published in:
Nature Genetics, 2009, v. 41, n. 11, p. 1238, doi. 10.1038/ng.465
By:
- Bass, Adam J.;
- Watanabe, Hideo;
- Mermel, Craig H.;
- Soyoung Yu;
- Perner, Sven;
- Verhaak, Roel G.;
- So Young Kim;
- Wardwell, Leslie;
- Tamayo, Pablo;
- Gat-Viks, Irit;
- Ramos, Alex H.;
- Woo, Michele S.;
- Weir, Barbara A.;
- Getz, Gad;
- Beroukhim, Rameen;
- O'Kelly, Michael;
- Dutt, Amit;
- Rozenblatt-Rosen, Orit;
- Dziunycz, Piotr;
- Komisarof, Justin
Publication type:
Article
Lin28 promotes transformation and is associated with advanced human malignancies.
Published in:
Nature Genetics, 2009, v. 41, n. 7, p. 843, doi. 10.1038/ng.392
By:
- Viswanathan, Srinivas R.;
- Powers, John T.;
- Einhorn, William;
- Hoshida, Yujin;
- Ng, Tony L.;
- Toffanin, Sara;
- O'Sullivan, Maureen;
- Jun Lu;
- Phillips, Letha A.;
- Lockhart, Victoria L.;
- Shah, Samar P.;
- Tanwar, Pradeep S.;
- Mermel, Craig H.;
- Beroukhim, Rameen;
- Azam, Mohammad;
- Teixeira, Jose;
- Meyerson, Matthew;
- Hughes, Timothy P.;
- Llovet, Josep M.;
- Radich, Jerald
Publication type:
Article
Corrigendum: High-throughput oncogene mutation profiling in human cancer.
Published in:
2007
By:
- Thomas, Roman K.;
- Baker, Alissa C.;
- DeBiasi, Ralph M.;
- Winckler, Wendy;
- LaFramboise, Thomas;
- Lin, William M.;
- Wang, Meng;
- Feng, Whei;
- Zander, Thomas;
- MacConnaill, Laura E.;
- Lee, Jeffrey C.;
- Nicoletti, Rick;
- Hatton, Charlie;
- Goyette, Mary;
- Girard, Luc;
- Majmudar, Kuntal;
- Ziaugra, Liuda;
- Wong, Kwok-Kin;
- Gabriel, Stacey;
- Beroukhim, Rameen
Publication type:
Correction Notice
High-throughput oncogene mutation profiling in human cancer.
Published in:
Nature Genetics, 2007, v. 39, n. 3, p. 347, doi. 10.1038/ng1975
By:
- Thomas, Roman K.;
- Baker, Alissa C.;
- DeBiasi, Ralph M.;
- Winckler, Wendy;
- LaFramboise, Thomas;
- Lin, William M.;
- Meng Wang;
- Whei Feng;
- Zander, Thomas;
- MacConnaill, Laura E.;
- Lee, Jeffrey C.;
- Nicoletti, Rick;
- Hatton, Charlie;
- Goyette, Mary;
- Girard, Luc;
- Majmudar, Kuntal;
- Ziaugra, Liuda;
- Kwok-Kin Wong;
- Gabriel, Stacey;
- Beroukhim, Rameen
Publication type:
Article
Structure and mechanism of activity-based inhibition of the EGF receptor by Mig6.
Published in:
Nature Structural & Molecular Biology, 2015, v. 22, n. 9, p. 703, doi. 10.1038/nsmb.3074
By:
- Park, Eunyoung;
- Kim, Nayoung;
- Ficarro, Scott B;
- Zhang, Yi;
- Lee, Byung Il;
- Cho, Ahye;
- Kim, Kihong;
- Park, Angela K J;
- Park, Woong-Yang;
- Murray, Bradley;
- Meyerson, Matthew;
- Beroukhim, Rameen;
- Marto, Jarrod A;
- Cho, Jeonghee;
- Eck, Michael J
Publication type:
Article
Tangent normalization for somatic copy-number inference in cancer genome analysis.
Published in:
Bioinformatics, 2022, v. 38, n. 20, p. 4677, doi. 10.1093/bioinformatics/btac586
By:
- Gao, Galen F;
- Oh, Coyin;
- Saksena, Gordon;
- Deng, Davy;
- Westlake, Lindsay C;
- Hill, Barbara A;
- Reich, Michael;
- Schumacher, Steven E;
- Berger, Ashton C;
- Carter, Scott L;
- Cherniack, Andrew D;
- Meyerson, Matthew;
- Tabak, Barbara;
- Beroukhim, Rameen;
- Getz, Gad
Publication type:
Article
Quantification of aneuploidy in targeted sequencing data using ASCETS.
Published in:
Bioinformatics, 2021, v. 37, n. 16, p. 2461, doi. 10.1093/bioinformatics/btaa980
By:
- Spurr, Liam F;
- Touat, Mehdi;
- Taylor, Alison M;
- Dubuc, Adrian M;
- Shih, Juliann;
- Meredith, David M;
- Pisano, William V;
- Meyerson, Matthew L;
- Ligon, Keith L;
- Cherniack, Andrew D;
- Li, Yvonne Y;
- Beroukhim, Rameen
Publication type:
Article
Corrigendum: Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth.
Published in:
Scientific Reports, 2017, p. 46873, doi. 10.1038/srep46873
By:
- Holst, Frederik;
- Hoivik, Erling A.;
- Gibson, William J.;
- Taylor-Weiner, Amaro;
- Schumacher, Steven E.;
- Asmann, Yan W.;
- Grossmann, Patrick;
- Trovik, Jone;
- Necela, Brian M.;
- Thompson, E. Aubrey;
- Meyerson, Matthew;
- Beroukhim, Rameen;
- Salvesen, Helga B.;
- Cherniack, Andrew D.
Publication type:
Article
Corrigendum: Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth.
Published in:
Scientific Reports, 2016, p. 27960, doi. 10.1038/srep27960
By:
- Holst, Frederik;
- Hoivik, Erling A.;
- Gibson, William J.;
- Taylor-Weiner, Amaro;
- Schumacher, Steven E.;
- Asmann, Yan W.;
- Grossmann, Patrick;
- Trovik, Jone;
- Necela, Brian M.;
- Thompson, E. Aubrey;
- Meyerson, Matthew;
- Beroukhim, Rameen;
- Salvesen, Helga B.;
- Cherniack, Andrew D.
Publication type:
Article
Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth.
Published in:
Scientific Reports, 2016, p. 25521, doi. 10.1038/srep25521
By:
- Holst, Frederik;
- Hoivik, Erling A.;
- Gibson, William J.;
- Taylor-Weiner, Amaro;
- Schumacher, Steven E.;
- Asmann, Yan W.;
- Grossmann, Patrick;
- Trovik, Jone;
- Necela, Brian M.;
- Thompson, E. Aubrey;
- Meyerson, Matthew;
- Beroukhim, Rameen;
- Salvesen, Helga B.;
- Cherniack, Andrew D.
Publication type:
Article
Integrated Genomic Analysis of the 8q24 Amplification in Endometrial Cancers Identifies <i>ATAD2</i> as Essential to <i>MYC-</i>Dependent Cancers.
Published in:
PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0054873
By:
- Raeder, Maria B.;
- Birkeland, Even;
- Trovik, Jone;
- Krakstad, Camilla;
- Shehata, Shyemaa;
- Schumacher, Steven;
- Zack, Travis I.;
- Krohn, Antje;
- Werner, Henrica MJ.;
- Moody, Susan E.;
- Wik, Elisabeth;
- Stefansson, Ingunn M.;
- Holst, Frederik;
- Oyan, Anne M.;
- Tamayo, Pablo;
- Mesirov, Jill P.;
- Kalland, Karl H.;
- Akslen, Lars A.;
- Simon, Ronald;
- Beroukhim, Rameen
Publication type:
Article
Case Report: Next generation sequencing identifies a NAB2-STAT6 fusion in Glioblastoma.
Published in:
Diagnostic Pathology, 2016, v. 11, p. 1, doi. 10.1186/s13000-016-0455-9
By:
- Diamandis, Phedias;
- Ferrer-Luna, Ruben;
- Huang, Raymond Y.;
- Folkerth, Rebecca D.;
- Ligon, Azra H.;
- Wen, Patrick Y.;
- Beroukhim, Rameen;
- Ligon, Keith L.;
- Ramkissoon, Shakti H.
Publication type:
Article
Major copy proportion analysis of tumor samples using SNP arrays.
Published in:
BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-204
By:
- Cheng Li;
- Beroukhim, Rameen;
- Weir, Barbara A.;
- Winckler, Wendy;
- Garraway, Levi A.;
- Sellers, William R.;
- Meyerson, Matthew
Publication type:
Article
The histone methyltransferase SETDB1 is recurrently amplified in melanoma and accelerates its onset.
Published in:
Nature, 2011, v. 471, n. 7339, p. 513, doi. 10.1038/nature09806
By:
- Ceol, Craig J.;
- Houvras, Yariv;
- Jane-Valbuena, Judit;
- Bilodeau, Steve;
- Orlando, David A.;
- Battisti, Valentine;
- Fritsch, Lauriane;
- Lin, William M.;
- Hollmann, Travis J.;
- Ferré, Fabrizio;
- Bourque, Caitlin;
- Burke, Christopher J.;
- Turner, Laura;
- Uong, Audrey;
- Johnson, Laura A.;
- Beroukhim, Rameen;
- Mermel, Craig H.;
- Loda, Massimo;
- Ait-Si-Ali, Slimane;
- Garraway, Levi A.
Publication type:
Article
The landscape of somatic copy-number alteration across human cancers.
Published in:
Nature, 2010, v. 463, n. 7283, p. 899, doi. 10.1038/nature08822
By:
- Beroukhim, Rameen;
- Mermel, Craig H.;
- Porter, Dale;
- Wei, Guo;
- Raychaudhuri, Soumya;
- Donovan, Jerry;
- Barretina, Jordi;
- Boehm, Jesse S.;
- Dobson, Jennifer;
- Urashima, Mitsuyoshi;
- Mc Henry, Kevin T.;
- Pinchback, Reid M.;
- Ligon, Azra H.;
- Cho, Yoon-Jae;
- Haery, Leila;
- Greulich, Heidi;
- Reich, Michael;
- Winckler, Wendy;
- Lawrence, Michael S.;
- Weir, Barbara A.
Publication type:
Article
Characterizing the cancer genome in lung adenocarcinoma.
Published in:
Nature, 2007, v. 450, n. 7171, p. 893, doi. 10.1038/nature06358
By:
- Weir, Barbara A.;
- Woo, Michele S.;
- Getz, Gad;
- Perner, Sven;
- Li Ding;
- Beroukhim, Rameen;
- Lin, William M.;
- Province, Michael A.;
- Kraja, Aldi;
- Johnson, Laura A.;
- Shah, Kinjal;
- Sato, Mitsuo;
- Thomas, Roman K.;
- Barletta, Justine A.;
- Borecki, Ingrid B.;
- Broderick, Stephen;
- Chang, Andrew C.;
- Chiang, Derek Y.;
- Chirieac, Lucian R.;
- Jeonghee Cho
Publication type:
Article
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis.
Published in:
Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-019-0741-7
By:
- Carlevaro-Fita, Joana;
- Lanzós, Andrés;
- Feuerbach, Lars;
- Hong, Chen;
- Mas-Ponte, David;
- Pedersen, Jakob Skou;
- PCAWG Drivers and Functional Interpretation Group;
- Abascal, Federico;
- Amin, Samirkumar B.;
- Bader, Gary D.;
- Barenboim, Jonathan;
- Beroukhim, Rameen;
- Bertl, Johanna;
- Boroevich, Keith A.;
- Brunak, Søren;
- Campbell, Peter J.;
- Chakravarty, Dimple;
- Chan, Calvin Wing Yiu;
- Chen, Ken;
- Choi, Jung Kyoon
Publication type:
Article
Phase II trial of ponatinib in patients with bevacizumab‐refractory glioblastoma.
Published in:
Cancer Medicine, 2019, v. 8, n. 13, p. 5988, doi. 10.1002/cam4.2505
By:
- Lee, Eudocia Q.;
- Muzikansky, Alona;
- Duda, Dan G.;
- Gaffey, Sarah;
- Dietrich, Jorg;
- Nayak, Lakshmi;
- Chukwueke, Ugonma N.;
- Beroukhim, Rameen;
- Doherty, Lisa;
- Laub, Caroline Kane;
- LaFrankie, Debra;
- Fontana, Brittney;
- Stefanik, Jennifer;
- Ruland, Sandra;
- Caruso, Victoria;
- Bruno, Jennifer;
- Ligon, Keith;
- Reardon, David A.;
- Wen, Patrick Y.
Publication type:
Article
The genomic landscape of dysembryoplastic neuroepithelial tumours and a comprehensive analysis of recurrent cases.
Published in:
Neuropathology & Applied Neurobiology, 2022, v. 48, n. 6, p. 1, doi. 10.1111/nan.12834
By:
- Pagès, Mélanie;
- Debily, Marie‐Anne;
- Fina, Frédéric;
- Jones, David T. W.;
- Saffroy, Raphael;
- Castel, David;
- Blauwblomme, Thomas;
- Métais, Alice;
- Bourgeois, Marie;
- Lechapt‐Zalcman, Emmanuèle;
- Tauziède‐Espariat, Arnault;
- Andreiuolo, Felipe;
- Chrétien, Fabrice;
- Grill, Jacques;
- Boddaert, Nathalie;
- Figarella‐Branger, Dominique;
- Beroukhim, Rameen;
- Varlet, Pascale
Publication type:
Article
Activity of PD-1 blockade with nivolumab among patients with recurrent atypical/anaplastic meningioma: phase II trial results.
Published in:
Neuro-Oncology, 2022, v. 24, n. 1, p. 101, doi. 10.1093/neuonc/noab118
By:
- Bi, Wenya Linda;
- Nayak, Lakshmi;
- Meredith, David M;
- Driver, Joseph;
- Du, Ziming;
- Hoffman, Samantha;
- Li, Yvonne;
- Lee, Eudocia Quant;
- Beroukhim, Rameen;
- Rinne, Mikael;
- McFaline-Figueroa, Ricardo;
- Chukwueke, Ugonma;
- McCluskey, Christine;
- Gaffey, Sarah;
- Cherniack, Andrew D;
- Stefanik, Jennifer;
- Doherty, Lisa;
- Taubert, Christina;
- Cifrino, Meghan;
- LaFrankie, Deborah
Publication type:
Article
Molecular profiling and targeted therapy in pediatric gliomas: review and consensus recommendations.
Published in:
Neuro-Oncology, 2019, v. 21, n. 8, p. 968, doi. 10.1093/neuonc/noz022
By:
- Miklja, Zachary;
- Pasternak, Amy;
- Stallard, Stefanie;
- Nicolaides, Theodore;
- Kline-Nunnally, Cassie;
- Cole, Bonnie;
- Beroukhim, Rameen;
- Bandopadhayay, Pratiti;
- Chi, Susan;
- Ramkissoon, Shakti H;
- Mullan, Brendan;
- Bruzek, Amy K;
- Gauthier, Angela;
- Garcia, Taylor;
- Atchison, Christie;
- Marini, Bernard;
- Fouladi, Maryam;
- Parsons, D William;
- Leary, Sarah;
- Mueller, Sabine
Publication type:
Article
THER-22. BROMODOMAIN INHIBITORS INDUCE DOWNREGULATION OF DNA DAMAGE REPAIR PATHWAYS AND OFFER NOVEL SYNERGISTIC COMBINATIONS WITH ENHANCED SAFETY PROFILES FOR THE TREATMENT OF MEDULLOBLASTOMA AND GLIOBLASTOMA.
Published in:
Neuro-Oncology, 2019, v. 21, p. ii118, doi. 10.1093/neuonc/noz036.227
By:
- Lam, Fred C;
- Vu-Han, Tu-Lan;
- Kooj, Bert Van de;
- Kong, Yi Wen;
- Bandopadhayay, Pratiti;
- Beroukhim, Rameen;
- Sarkaria, Jann;
- Hammond, Paula;
- Yaffe, Michael
Publication type:
Article
MEDU-36. BCL2 FAMILY MEMBERS ATTENUATE RESPONSE OF MYC-DRIVEN MEDULLOBLASTOMAS TO BET-BROMODOMAIN INHIBITION.
Published in:
Neuro-Oncology, 2019, v. 21, p. ii110, doi. 10.1093/neuonc/noz036.194
By:
- Clymer, Jessica;
- Gionet, Gabrielle;
- Gonzalez, Elizabeth;
- Buchan, Graham;
- Qian, Kenin;
- Ho, Patricia;
- O'Rourke, Ryan;
- Balboni-Iniguez, Amanda;
- Stegmaier, Kimberley;
- Ligon, Keith;
- Piccioni, Federica;
- Johannessen, Cory;
- Beroukhim, Rameen;
- Bandopadhayay, Pratiti
Publication type:
Article
LGG-04. CLINICO-HISTO-MOLECULAR LANDSCAPE OF EIGHTY-TWO PEDIATRIC AND YOUNG ADULT DYSEMBRYOPLASTIC NEUROEPITHELIAL TUMORS.
Published in:
Neuro-Oncology, 2019, v. 21, p. ii99, doi. 10.1093/neuonc/noz036.147
By:
- Pagès, Mélanie;
- Jones, David T W;
- Boddaert, Nathalie;
- Tauziède-Espariat, Arnault;
- Debily, Marie-Anne;
- Blauwblomme, Thomas;
- Figarella-Branger, Dominique;
- Beroukhim, Rameen;
- Varlet, Pascale
Publication type:
Article
GENE-07. LIQUID BIOPSY DETECTION OF GENOMIC ALTERATIONS IN PEDIATRIC BRAIN TUMORS FROM CELL-FREE DNA IN PERIPHERAL BLOOD, CSF, AND URINE.
Published in:
Neuro-Oncology, 2019, v. 21, p. ii82, doi. 10.1093/neuonc/noz036.078
By:
- Pagès, Mélanie;
- Rotem, Denisse;
- Gydush, Gregory;
- Reed, Sarah;
- Rhoades, Justin;
- Ha, Gavin;
- Lo, Chris;
- Tracy, Adam;
- Jones, Robert;
- Becker, Sarah;
- Haller, Michaela;
- Chi, Susan;
- Kieran, Mark;
- Goumnerova, Liliana;
- Love, Christopher;
- Ligon, Keith;
- Wright, Karen;
- Adalsteinsson, Viktor;
- Beroukhim, Rameen;
- Bandopadhayay, Pratiti
Publication type:
Article
DIPG-12. CHARACTERIZING THE ROLE OF PPM1D MUTATIONS IN THE PATHOGENESIS OF DIFFUSE INTRINSIC PONTINE GLIOMAS (DIPGs).
Published in:
Neuro-Oncology, 2019, v. 21, p. ii70, doi. 10.1093/neuonc/noz036.033
By:
- Khadka, Prasidda;
- Reitman, Zachary J;
- Buchan, Graham;
- Hartley, Rachel;
- Bear, Heather;
- Georgis, Yohanna;
- Jarmale, Spandana;
- Schoolcraft, Kathleen;
- Miller, Peter;
- Stiles, Charles D;
- Chowdhury, Dipanjan;
- Haas-Kogan, Daphne;
- Johannessen, Cory;
- Ebert, Benjamin L;
- Ligon, Keith L;
- Phoenix, Timothy;
- Beroukhim, Rameen;
- Bandopadhayay, Pratiti
Publication type:
Article
DIPG-02. TRANSLATIONAL MR IMAGING CORRELATES FOR MOLECULAR ANALYSES IN DIFFUSE INTRINSIC PONTINE GLIOMA (DIPG).
Published in:
Neuro-Oncology, 2019, v. 21, p. ii68, doi. 10.1093/neuonc/noz036.023
By:
- Poussaint, Tina Young;
- Vajapeyam, Sridhar;
- Brown, Douglas;
- Kao, Pei-Chi;
- Ma, Clement;
- Greenspan, Lianne;
- Gupta, Nalin;
- Goumnerova, Liliana;
- Bandopadhayay, Pratiti;
- Beroukhim, Rameen;
- Ligon, Keith;
- Kieran, Mark;
- Chi, Susan;
- Wright, Karen
Publication type:
Article
DRES-05. MOLECULAR EVOLUTION OF DIFFUSE GLIOMAS AND THE GLIOMA LONGITUDINAL ANALYSIS CONSORTIUM.
Published in:
Neuro-Oncology, 2018, v. 20, p. vi76, doi. 10.1093/neuonc/noy148.312
By:
- Verhaak, Roel;
- Consortium, GLASS;
- Aldape, Kenneth;
- Amin, Samirkumar;
- Ashley, David;
- Barnholtz-Sloan, Jill;
- Bates, Amanda;
- Beroukhim, Rameen;
- Bock, Christoph;
- Brat, Daniel
Publication type:
Article
Glioma through the looking GLASS: molecular evolution of diffuse gliomas and the Glioma Longitudinal Analysis Consortium.
Published in:
Neuro-Oncology, 2018, v. 20, n. 7, p. 873, doi. 10.1093/neuonc/noy020
By:
- Aldape, Kenneth;
- Amin, Samirkumar B.;
- Ashley, David M.;
- Barnholtz-Sloan, Jill S.;
- Bates, Amanda J.;
- Beroukhim, Rameen;
- Bock, Christoph;
- Brat, Daniel J.;
- Claus, Elizabeth B.;
- Costello, Joseph F.;
- de Groot, John F.;
- Finocchiaro, Gaetano;
- French, Pim J.;
- Hui K. Gan;
- Griffith, Brent;
- Herold-Mende, Christel C.;
- Horbinski, Craig;
- Iavarone, Antonio;
- Kalkanis, Steven N.;
- Karabatsou, Konstantina
Publication type:
Article
Leveraging molecular datasets for biomarker-based clinical trial design in glioblastoma.
Published in:
Neuro-Oncology, 2017, v. 19, n. 7, p. 908, doi. 10.1093/neuonc/now312
By:
- Tanguturi, Shyam K.;
- Trippa, Lorenzo;
- Ramkissoon, Shakti H.;
- Pelton, Kristine;
- Knoff, David;
- Sandak, David;
- Lindeman, Neal I.;
- Ligon, Azra H.;
- Beroukhim, Rameen;
- Parmigiani, Giovanni;
- Wen, Patrick Y.;
- Ligon, Keith L.;
- Alexander, Brian M.
Publication type:
Article
Tyrosine receptor kinase B is a drug target in astrocytomas.
Published in:
Neuro-Oncology, 2017, v. 19, n. 1, p. 22, doi. 10.1093/neuonc/now139
By:
- Jing Ni;
- Shaozhen Xie;
- Ramkissoon, Shakti H.;
- Luu, Victor;
- Yu Sun;
- Bandopadhayay, Pratiti;
- Beroukhim, Rameen;
- Roberts, Thomas M.;
- Stiles, Charles D.;
- Segal, Rosalind A.;
- Ligon, Keith L.;
- Hahn, William C.;
- Zhao, Jean J.
Publication type:
Article
A prognostic cytogenetic scoring system to guide the adjuvant management of patients with atypical meningioma.
Published in:
Neuro-Oncology, 2016, v. 18, n. 2, p. 269, doi. 10.1093/neuonc/nov177
By:
- Aizer, Ayal A.;
- Abedalthagafi, Malak;
- Bi, Wenya Linda;
- Horvath, Margaret C.;
- Arvold, Nils D.;
- Al-Mefty, Ossama;
- Lee, Eudocia Q.;
- Nayak, Lakshmi;
- Rinne, Mikael L.;
- Norden, Andrew D.;
- Reardon, David A.;
- Wen, Patrick Y.;
- Ligon, Keith L.;
- Ligon, Azra H.;
- Beroukhim, Rameen;
- Dunn, Ian F.;
- Santagata, Sandro;
- Alexander, Brian M.
Publication type:
Article
Phase II study of panobinostat in combination with bevacizumab for recurrent glioblastoma and anaplastic glioma.
Published in:
Neuro-Oncology, 2015, v. 17, n. 6, p. 862, doi. 10.1093/neuonc/nou350
By:
- Lee, Eudocia Q.;
- Reardon, David A.;
- Schiff, David;
- Drappatz, Jan;
- Muzikansky, Alona;
- Grimm, Sean A.;
- Norden, Andrew D.;
- Nayak, Lakshmi;
- Beroukhim, Rameen;
- Rinne, Mikael L.;
- Chi, Andrew S.;
- Batchelor, Tracy T.;
- Hempfling, Kelly;
- McCluskey, Christine;
- Smith, Katrina H.;
- Gaffey, Sarah C.;
- Wrigley, Brendan;
- Ligon, Keith L.;
- Raizer, Jeffrey J.;
- Wen, Patrick Y.
Publication type:
Article
Retrospective study of carmustine or lomustine with bevacizumab in recurrent glioblastoma patients who have failed prior bevacizumab.
Published in:
Neuro-Oncology, 2014, v. 16, n. 11, p. 1523, doi. 10.1093/neuonc/nou118
By:
- Rahman, Rifaquat;
- Hempfling, Kelly;
- Norden, Andrew D.;
- Reardon, David A.;
- Nayak, Lakshmi;
- Rinne, Mikael L.;
- Beroukhim, Rameen;
- Doherty, Lisa;
- Ruland, Sandra;
- Rai, Arun;
- Rifenburg, Jennifer;
- LaFrankie, Debra;
- Alexander, Brian M.;
- Huang, Raymond Y.;
- Wen, Patrick Y.;
- Lee, Eudocia Q.
Publication type:
Article
Adjuvant radiation therapy, local recurrence, and the need for salvage therapy in atypical meningioma.
Published in:
Neuro-Oncology, 2014, v. 16, n. 11, p. 1547, doi. 10.1093/neuonc/nou098
By:
- Aizer, Ayal A.;
- Arvold, Nils D.;
- Catalano, Paul;
- Claus, Elizabeth B.;
- Golby, Alexandra J.;
- Johnson, Mark D.;
- Al-Mefty, Ossama;
- Wen, Patrick Y.;
- Reardon, David A.;
- Lee, Eudocia Q.;
- Nayak, Lakshmi;
- Rinne, Mikael L.;
- Beroukhim, Rameen;
- Weiss, Stephanie E.;
- Ramkissoon, Shakti H.;
- Abedalthagafi, Malak;
- Santagata, Sandro;
- Dunn, Ian F.;
- Alexander, Brian M.
Publication type:
Article

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