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DataGauge: A Practical Process for Systematically Designing and Implementing Quality Assessments of Repurposed Clinical Data.
Published in:
eGEMS (Generating Evidence & Methods to Improve Patient Outcomes), 2019, v. 7, n. 1, p. 1, doi. 10.5334/egems.286
By:
- Diaz-Garelli, Jose-Franck;
- Bernstam, Elmer V.;
- Lee, MinJae;
- Hwang, Kevin O.;
- Rahbar, Mohammad H.;
- Johnson, Todd R.
Publication type:
Article
Patient and Provider Perspectives on Medication Non-adherence Among Patients with Depression and/or Diabetes in Diverse Community Settings – A Qualitative Analysis.
Published in:
Patient Preference & Adherence, 2022, v. 16, p. 1581, doi. 10.2147/PPA.S328785
By:
- Hamilton, Jane E;
- Blanco, Eduardo;
- Selek, Salih;
- Wirfel, Kelly L;
- Bernstam, Elmer V;
- Velligan, Dawn;
- Gudala, Meghana;
- Roberts, Kirk
Publication type:
Article
Confidence-based laboratory test reduction recommendation algorithm.
Published in:
BMC Medical Informatics & Decision Making, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12911-023-02187-3
By:
- Huang, Tongtong;
- Li, Linda T.;
- Bernstam, Elmer V.;
- Jiang, Xiaoqian
Publication type:
Article
A day in the life of PubMed: analysis of a typical day's query log.
Published in:
2007
By:
- Herskovic JR;
- Tanaka LY;
- Hersh W;
- Bernstam EV;
- Herskovic, Jorge R;
- Tanaka, Len Y;
- Hersh, William;
- Bernstam, Elmer V
Publication type:
journal article
A Day in the Life of PubMed: Analysis of a Typical Day's Query Log.
Published in:
Journal of the American Medical Informatics Association, 2007, v. 14, n. 2, p. 212, doi. 10.1197/jamia.M2191
By:
- Herskovic, Jorge R.;
- Tanaka, Len Y.;
- Hersh, William;
- Bernstam, Elmer V.
Publication type:
Article
Using citation data to improve retrieval from MEDLINE.
Published in:
2006
By:
- Bernstam EV;
- Herskovic JR;
- Aphinyanaphongs Y;
- Aliferis CF;
- Sriram MG;
- Hersh WR;
- Bernstam, Elmer V;
- Herskovic, Jorge R;
- Aphinyanaphongs, Yindalon;
- Aliferis, Constantin F;
- Sriram, Madurai G;
- Hersh, William R
Publication type:
journal article
Using Citation Data to Improve Retrieval from MEDLINE.
Published in:
Journal of the American Medical Informatics Association, 2006, v. 13, n. 1, p. 96, doi. 10.1197/jamia.M1909
By:
- Bernstam, Elmer V.;
- Herskovic, Jorge R.;
- Aphinyanaphongs, Yindalon;
- Aliferis, Constantin F.;
- Sriram, Madurai G.;
- Hersh, William R.
Publication type:
Article
Toward standardization, harmonization, and integration of social determinants of health data: A Texas Clinical and Translational Science Award institutions collaboration.
Published in:
Journal of Clinical & Translational Science, 2024, v. 8, n. 1, p. 1, doi. 10.1017/cts.2024.2
By:
- Craven, Catherine K.;
- Highfield, Linda;
- Basit, Mujeeb;
- Bernstam, Elmer V.;
- Choi, Byeong Yeob;
- Ferrer, Robert L.;
- Gelfond, Jonathan A.;
- Pruitt, Sandi L.;
- Kannan, Vaishnavi;
- Shireman, Paula K.;
- Spratt, Heidi;
- Torres Morales, Kayla J.;
- Chen-Pin Wang;
- Zhan Wang;
- Zozus, Meredith N.;
- Sankary, Edward C.;
- Schmidt, Susanne
Publication type:
Article
Structural social support predicts functional social support in an online weight loss programme.
Published in:
Health Expectations, 2014, v. 17, n. 3, p. 345, doi. 10.1111/j.1369-7625.2011.00759.x
By:
- Hwang, Kevin O.;
- Etchegaray, Jason M.;
- Sciamanna, Christopher N.;
- Bernstam, Elmer V.;
- Thomas, Eric J.
Publication type:
Article
Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature.
Published in:
Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav034
By:
- Guocai Chen;
- Jieyi Zhao;
- Cohen, Trevor;
- Cui Tao;
- Jingchun Sun;
- Hua Xu;
- Bernstam, Elmer V.;
- Lawson, Andrew;
- Jia Zeng;
- Johnson, Amber M.;
- Holla, Vijaykumar;
- Bailey, Ann M.;
- Lara-Guerra, Humberto;
- Litzenburger, Beate;
- Meric-Bernstam, Funda;
- Zheng, W. Jim
Publication type:
Article
Graph-based signal integration for high-throughput phenotyping.
Published in:
BMC Bioinformatics, 2012, v. 13, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-13-S13-S2
By:
- Herskovic, Jorge R.;
- Subramanian, Devika;
- Cohen, Trevor;
- Bozzo-Silva, Pamela A.;
- Bearden, Charles F.;
- Bernstam, Elmer V.
Publication type:
Article
Ontology driven integration platform for clinical and translational research.
Published in:
BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S2-S2
By:
- Mirhaji, Parsa;
- Min Zhu;
- Vagnoni, Mattew;
- Bernstam, Elmer V.;
- Jiajie Zhang;
- Smith, Jack W.
Publication type:
Article
Understanding enterprise data warehouses to support clinical and translational research: impact, sustainability, demand management, and accessibility.
Published in:
Journal of the American Medical Informatics Association, 2024, v. 31, n. 7, p. 1522, doi. 10.1093/jamia/ocae111
By:
- Campion, Thomas R;
- Craven, Catherine K;
- Dorr, David A;
- Bernstam, Elmer V;
- Knosp, Boyd M
Publication type:
Article
A deep learning approach to identify missing is-a relations in SNOMED CT.
Published in:
Journal of the American Medical Informatics Association, 2023, v. 30, n. 3, p. 475, doi. 10.1093/jamia/ocac248
By:
- Abeysinghe, Rashmie;
- Zheng, Fengbo;
- Bernstam, Elmer V;
- Shi, Jay;
- Bodenreider, Olivier;
- Cui, Licong
Publication type:
Article
Closing the loop: automatically identifying abnormal imaging results in scanned documents.
Published in:
2022
By:
- Kumar, Akshat;
- Goodrum, Heath;
- Kim, Ashley;
- Stender, Carly;
- Roberts, Kirk;
- Bernstam, Elmer V
Publication type:
journal article
Quantitating and assessing interoperability between electronic health records.
Published in:
2022
By:
- Bernstam, Elmer V;
- Warner, Jeremy L;
- Krauss, John C;
- Ambinder, Edward;
- Rubinstein, Wendy S;
- Komatsoulis, George;
- Miller, Robert S;
- Chen, James L
Publication type:
journal article
Understanding enterprise data warehouses to support clinical and translational research: enterprise information technology relationships, data governance, workforce, and cloud computing.
Published in:
2022
By:
- Knosp, Boyd M;
- Craven, Catherine K;
- Dorr, David A;
- Bernstam, Elmer V;
- Campion, Thomas R
Publication type:
journal article
SCOR: A secure international informatics infrastructure to investigate COVID-19.
Published in:
2020
By:
- Raisaro, J L;
- Marino, Francesco;
- Troncoso-Pastoriza, Juan;
- Beau-Lejdstrom, Raphaelle;
- Bellazzi, Riccardo;
- Murphy, Robert;
- Bernstam, Elmer V;
- Wang, Henry;
- Bucalo, Mauro;
- Chen, Yong;
- Gottlieb, Assaf;
- Harmanci, Arif;
- Kim, Miran;
- Kim, Yejin;
- Klann, Jeffrey;
- Klersy, Catherine;
- Malin, Bradley A;
- Méan, Marie;
- Prasser, Fabian;
- Scudeller, Luigia
Publication type:
journal article
Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity.
Published in:
2020
By:
- Seligson, Nathan D;
- Warner, Jeremy L;
- Dalton, William S;
- Martin, David;
- Miller, Robert S;
- Patt, Debra;
- Kehl, Kenneth L;
- Palchuk, Matvey B;
- Alterovitz, Gil;
- Wiley, Laura K;
- Huang, Ming;
- Shen, Feichen;
- Wang, Yanshan;
- Nguyen, Khoa A;
- Wong, Anthony F;
- Meric-Bernstam, Funda;
- Bernstam, Elmer V;
- Chen, James L
Publication type:
journal article
A federated EHR network data completeness tracking system.
Published in:
2019
By:
- Estiri, Hossein;
- Klann, Jeffrey G;
- Weiler, Sarah R;
- Alema-Mensah, Ernest;
- Applegate, R Joseph;
- Lozinski, Galina;
- Patibandla, Nandan;
- Wei, Kun;
- Adams, William G;
- Natter, Marc D;
- Ofili, Elizabeth O;
- Ostasiewski, Brian;
- Quarshie, Alexander;
- Rosenthal, Gary E;
- Bernstam, Elmer V;
- Mandl, Kenneth D;
- Murphy, Shawn N;
- Joseph Applegate, R
Publication type:
journal article
Biases introduced by filtering electronic health records for patients with "complete data".
Published in:
2017
By:
- Weber, Griffin M.;
- Adams, William G.;
- Bernstam, Elmer V.;
- Bickel, Jonathan P.;
- Fox, Kathe P.;
- Marsolo, Keith;
- Raghavan, Vijay A.;
- Turchin, Alexander;
- Xiaobo Zhou;
- Murphy, Shawn N.;
- Mandl, Kenneth D.;
- Zhou, Xiaobo
Publication type:
journal article
Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov.
Published in:
2016
By:
- Jun Xu;
- Hee-Jin Lee;
- Jia Zeng;
- Yonghui Wu;
- Yaoyun Zhang;
- Liang-Chin Huang;
- Johnson, Amber;
- Holla, Vijaykumar;
- Bailey, Ann M.;
- Cohen, Trevor;
- Meric-Bernstam, Funda;
- Bernstam, Elmer V.;
- Hua Xu;
- Xu, Jun;
- Lee, Hee-Jin;
- Zeng, Jia;
- Wu, Yonghui;
- Zhang, Yaoyun;
- Huang, Liang-Chin;
- Xu, Hua
Publication type:
journal article
Automated identification of molecular effects of drugs (AIMED).
Published in:
2016
By:
- Fathiamini, Safa;
- Johnson, Amber M.;
- Jia Zeng;
- Araya, Alejandro;
- Holla, Vijaykumar;
- Bailey, Ann M.;
- Litzenburger, Beate C.;
- Sanchez, Nora S.;
- Khotskaya, Yekaterina;
- Hua Xu;
- Meric-Bernstam, Funda;
- Bernstam, Elmer V.;
- Cohen, Trevor;
- Zeng, Jia;
- Xu, Hua
Publication type:
journal article
Precision medicine informatics.
Published in:
2016
By:
- Frey, Lewis J.;
- Bernstam, Elmer V.;
- Denny, Joshua C.
Publication type:
Editorial
Expert guided natural language processing using one-class classification.
Published in:
Journal of the American Medical Informatics Association, 2015, v. 22, n. 5, p. 962, doi. 10.1093/jamia/ocv010
By:
- Joffe, Erel;
- Pettigrew, Emily J.;
- Herskovic, Jorge R.;
- Bearden, Charles F.;
- Bernstam, Elmer V.
Publication type:
Article
Patient-centered care, collaboration, communication, and coordination: a report from AMIA's 2013 Policy Meeting.
Published in:
Journal of the American Medical Informatics Association, 2015, v. 22, n. e1, p. e2, doi. 10.1136/amiajnl-2014-003176
By:
- Flatley Brennan, Patti;
- Valdez, Rupa;
- Alexander, Greg;
- Arora, Shifali;
- Bernstam, Elmer V.;
- Edmunds, Margo;
- Kirienko, Nikolai;
- Martin, Ross D.;
- Sim, Ida;
- Skiba, Diane;
- Rosenbloom, Trent
Publication type:
Article
BigMouth: a multi-institutional dental data repository.
Published in:
Journal of the American Medical Informatics Association, 2014, v. 21, n. 6, p. 1136, doi. 10.1136/amiajnl-2013-002230
By:
- Walji, Muhammad F.;
- Kalenderian, Elsbeth;
- Stark, Paul C.;
- White, Joel M.;
- Kookal, Krishna K.;
- Phan, Dat;
- Tran, Duong;
- Bernstam, Elmer V.;
- Ramoni, Rachel
Publication type:
Article
Attitudes regarding privacy of genomic information in personalized cancer therapy.
Published in:
Journal of the American Medical Informatics Association, 2014, v. 21, n. e2, p. e320, doi. 10.1136/amiajnl-2013-002579
By:
- Rogith, Deevakar;
- Yusuf, Rafeek A.;
- Hovick, Shelley R.;
- Peterson, Susan K.;
- Burton-Chase, Allison M.;
- Yisheng Li;
- Meric-Bernstam, Funda;
- Bernstam, Elmer V.
Publication type:
Article
Preserving an integrated view of informatics.
Published in:
Journal of the American Medical Informatics Association, 2014, v. 21, n. e1, p. e178, doi. 10.1136/amiajnl-2013-002262
By:
- Bernstam, Elmer V.;
- Tenenbaum, Jessica D.;
- Kuperman, Gilad J.
Publication type:
Article
A benchmark comparison of deterministic and probabilistic methods for defining manual review datasets in duplicate records reconciliation.
Published in:
Journal of the American Medical Informatics Association, 2014, v. 21, n. 1, p. 97, doi. 10.1136/amiajnl-2013-001744
By:
- Joffe, Erel;
- Byrne, Michael J.;
- Reeder, Phillip;
- Herskovic, Jorge R.;
- Johnson, Craig W.;
- McCoy, Allison B.;
- Sittig, Dean F.;
- Bernstam, Elmer V.
Publication type:
Article
Healthcare information technology and economics.
Published in:
Journal of the American Medical Informatics Association, 2013, v. 20, n. 2, p. 212, doi. 10.1136/amiajnl-2012-000821
By:
- Payne, Thomas H.;
- Bates, David W.;
- Berner, Eta S.;
- Bernstam, Elmer V.;
- Covvey, H. Dominic;
- Frisse, Mark E.;
- Graf, Thomas;
- Greenes, Robert A.;
- Hoffer, Edward P.;
- Kuperman, Gil;
- Lehmann, Harold P.;
- Liang, Louise;
- Middleton, Blackford;
- Omenn, Gilbert S.;
- Ozbolt, Judy
Publication type:
Article
Predicting biomedical document access as a function of past use.
Published in:
Journal of the American Medical Informatics Association, 2012, v. 19, n. 3, p. 473, doi. 10.1136/amiajnl-2011-000325
By:
- Goodwin, J. Caleb;
- Johnson, Todd R.;
- Cohen, Trevor;
- Herskovic, Jorge R.;
- Bernstam, Elmer V.
Publication type:
Article
Predictors of Student Success in Graduate Biomedical Informatics Training: Introductory Course and Program Success.
Published in:
Journal of the American Medical Informatics Association, 2009, v. 16, n. 6, p. 837, doi. 10.1197/jamia.M2895
By:
- WILLCOCKSON, IRMGARD U.;
- JOHNSON, CRAIG W.;
- HERSH, WILLIAM;
- BERNSTAM, ELMER V.
Publication type:
Article
Cancer-Related Internet Use and Its Association With Patient Decision Making and Trust in Physicians Among Patients in an Early Drug Development Clinic: A Questionnaire-Based Cross-Sectional Observational Study.
Published in:
2019
By:
- George, Goldy C;
- Iwuanyanwu, Eucharia C;
- Buford, Adrianna S;
- Piha-Paul, Sarina A;
- Subbiah, Vivek;
- Fu, Siqing;
- Karp, Daniel D;
- Pant, Shubham;
- Hinojosa, Christina O;
- Hess, Kenneth R;
- Cleeland, Charles S;
- Bernstam, Elmer V;
- Meric-Bernstam, Funda;
- Hong, David S
Publication type:
journal article
Commonly Cited Website Quality Criteria Are Not Effective at Identifying Inaccurate Online Information About Breast Cancer.
Published in:
Cancer (0008543X), 2008, v. 112, n. 6, p. 1206, doi. 10.1002/cncr.23308
By:
- Bernstam, Elmer V.;
- Walji, Muhammad F.;
- Sagaram, Smitha;
- Sagaram, Deepak;
- Johnson, Craig W.;
- Meric-Bernstam, Funda
Publication type:
Article
Validation of an Electronic Health Record–Based Suicide Risk Prediction Modeling Approach Across Multiple Health Care Systems.
Published in:
JAMA Network Open, 2020, p. e201262, doi. 10.1001/jamanetworkopen.2020.1262
By:
- Barak-Corren, Yuval;
- Castro, Victor M.;
- Nock, Matthew K.;
- Mandl, Kenneth D.;
- Madsen, Emily M.;
- Seiger, Ashley;
- Adams, William G.;
- Applegate, R. Joseph;
- Bernstam, Elmer V.;
- Klann, Jeffrey G.;
- McCarthy, Ellen P.;
- Murphy, Shawn N.;
- Natter, Marc;
- Ostasiewski, Brian;
- Patibandla, Nandan;
- Rosenthal, Gary E.;
- Silva, George S.;
- Wei, Kun;
- Weber, Griffin M.;
- Weiler, Sarah R.
Publication type:
Article
To err is divine?
Published in:
Medical Education, 2023, v. 57, n. 5, p. 389, doi. 10.1111/medu.15063
By:
- Swails, Jennifer L.;
- Bernstam, Elmer V.
Publication type:
Article
Role of faculty characteristics in failing to fail in clinical clerkships.
Published in:
Medical Education, 2022, v. 56, n. 6, p. 634, doi. 10.1111/medu.14725
By:
- Swails, Jennifer L.;
- Gadgil, Meghana A.;
- Goodrum, Heath;
- Gupta, Resmi;
- Rahbar, Mohammad H.;
- Bernstam, Elmer V.
Publication type:
Article
Predicting multiple sclerosis severity with multimodal deep neural networks.
Published in:
BMC Medical Informatics & Decision Making, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12911-023-02354-6
By:
- Zhang, Kai;
- Lincoln, John A.;
- Jiang, Xiaoqian;
- Bernstam, Elmer V.;
- Shams, Shayan
Publication type:
Article
Artificial intelligence in clinical and translational science: Successes, challenges and opportunities.
Published in:
CTS: Clinical & Translational Science, 2022, v. 15, n. 2, p. 309, doi. 10.1111/cts.13175
By:
- Bernstam, Elmer V.;
- Shireman, Paula K.;
- Meric‐Bernstam, Funda;
- N. Zozus, Meredith;
- Jiang, Xiaoqian;
- Brimhall, Bradley B.;
- Windham, Ashley K.;
- Schmidt, Susanne;
- Visweswaran, Shyam;
- Ye, Ye;
- Goodrum, Heath;
- Ling, Yaobin;
- Barapatre, Seemran;
- Becich, Michael J.
Publication type:
Article
Access to Routinely Collected Clinical Data for Research: A Process Implemented at an Academic Medical Center.
Published in:
CTS: Clinical & Translational Science, 2019, v. 12, n. 3, p. 231, doi. 10.1111/cts.12614
By:
- Guerrero, Susan C.;
- Sridhar, Sujatha;
- Edmonds, Cynthia;
- Solis, Christina F.;
- Zhang, Jiajie;
- McPherson, David D.;
- Bernstam, Elmer V.
Publication type:
Article
Physician interpretation of genomic test results and treatment selection.
Published in:
2018
By:
- Brusco, Lauren L.;
- Wathoo, Chetna;
- Mills Shaw, Kenna R.;
- Holla, Vijaykumar R.;
- Bailey, Ann M.;
- Johnson, Amber M.;
- Khotskaya, Yekaterina B.;
- Litzenburger, Beate C.;
- Sanchez, Nora S.;
- Zeng, Jia;
- Bernstam, Elmer V.;
- Eng, Cathy;
- Kee, Bryan K.;
- Amaria, Rodabe N.;
- Routbort, Mark J.;
- Mills, Gordon B.;
- Mendelsohn, John;
- Meric‐Bernstam, Funda;
- Meric-Bernstam, Funda
Publication type:
journal article
Attitudes toward molecular testing for personalized cancer therapy.
Published in:
Cancer (0008543X), 2015, v. 121, n. 2, p. 243, doi. 10.1002/cncr.28966
By:
- Yusuf, Rafeek A.;
- Rogith, Deevakar;
- Hovick, Shelly R. A.;
- Peterson, Susan K.;
- Burton‐Chase, Allison M.;
- Fellman, Bryan M.;
- Li, Yisheng;
- McKinney, Carolyn;
- Bernstam, Elmer V.;
- Meric‐Bernstam, Funda
Publication type:
Article
Enoxaparin may be associated with lower rates of mortality than unfractionated heparin in neurocritical and surgical patients.
Published in:
Journal of Thrombosis & Thrombolysis, 2023, v. 55, n. 3, p. 439, doi. 10.1007/s11239-022-02755-w
By:
- Samuel, Sophie;
- To, Catherine;
- Ling, Yaobin;
- Zhang, Kai;
- Jiang, Xiaoqian;
- Bernstam, Elmer V.
Publication type:
Article
Explanations for Unsuccessful Weight Loss Among Bariatric Surgery Candidates.
Published in:
Obesity Surgery, 2009, v. 19, n. 10, p. 1377, doi. 10.1007/s11695-008-9573-0
By:
- Hwang, Kevin O.;
- Childs, Joseph H.;
- Goodrick, G. Ken;
- Aboughali, Wael A.;
- Thomas, Eric J.;
- Johnson, Craig W.;
- Yu, Sherman C.;
- Bernstam, Elmer V.
Publication type:
Article
A Decision Support Framework for Genomically Informed Investigational Cancer Therapy.
Published in:
JNCI: Journal of the National Cancer Institute, 2015, v. 107, n. 7, p. 1, doi. 10.1093/jnci/djv098
By:
- Meric-Bernstam, Funda;
- Johnson, Amber;
- Holla, Vijaykumar;
- Bailey, Ann Marie;
- Brusco, Lauren;
- Chen, Ken;
- Routbort, Mark;
- Patel, Keyur P.;
- Zeng, Jia;
- Kopetz, Scott;
- Davies, Michael A.;
- Piha-Paul, Sarina A.;
- Hong, David S.;
- Eterovic, Agda Karina;
- Tsimberidou, Apostolia M.;
- Broaddus, Russell;
- Bernstam, Elmer V.;
- Shaw, Kenna R.;
- Mendelsohn, John;
- Mills, Gordon B.
Publication type:
Article
A decision support framework for genomically informed investigational cancer therapy.
Published in:
2015
By:
- Meric-Bernstam, Funda;
- Johnson, Amber;
- Holla, Vijaykumar;
- Bailey, Ann Marie;
- Brusco, Lauren;
- Chen, Ken;
- Routbort, Mark;
- Patel, Keyur P;
- Zeng, Jia;
- Kopetz, Scott;
- Davies, Michael A;
- Piha-Paul, Sarina A;
- Hong, David S;
- Eterovic, Agda Karina;
- Tsimberidou, Apostolia M;
- Broaddus, Russell;
- Bernstam, Elmer V;
- Shaw, Kenna R;
- Mendelsohn, John;
- Mills, Gordon B
Publication type:
journal article

Found: 47