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The microbiome of the lichen Lobaria pulmonaria varies according to climate on a subcontinental scale.
Published in:
Environmental Microbiology Reports, 2024, v. 16, n. 3, p. 1, doi. 10.1111/1758-2229.13289
By:
- Bogale, Anteneh Tamirat;
- Braun, Maria;
- Bernhardt, Jörg;
- Zühlke, Daniela;
- Schiefelbein, Ulf;
- Bog, Manuela;
- Scheidegger, Christoph;
- Zengerer, Veronika;
- Becher, Dörte;
- Grube, Martin;
- Riedel, Katharina;
- Bengtsson, Mia M.
Publication type:
Article
An optimized metaproteomics protocol for a holistic taxonomic and functional characterization of microbial communities from marine particles.
Published in:
Environmental Microbiology Reports, 2020, v. 12, n. 4, p. 367, doi. 10.1111/1758-2229.12842
By:
- Schultz, Doreen;
- Zühlke, Daniela;
- Bernhardt, Jörg;
- Francis, Thomas Ben;
- Albrecht, Dirk;
- Hirschfeld, Claudia;
- Markert, Stephanie;
- Riedel, Katharina
Publication type:
Article
An essential regulatory function of the DnaK chaperone dictates the decision between proliferation and maintenance in Caulobacter crescentus.
Published in:
PLoS Genetics, 2017, v. 13, n. 12, p. 1, doi. 10.1371/journal.pgen.1007148
By:
- Schramm, Frederic D.;
- Heinrich, Kristina;
- Thüring, Marietta;
- Bernhardt, Jörg;
- Jonas, Kristina
Publication type:
Article
The state of the art in the analysis of two-dimensional gel electrophoresis images.
Published in:
2008
By:
- Berth, Matthias;
- Moser, Frank;
- Kolbe, Markus;
- Bernhardt, Jörg
Publication type:
Correction Notice
The state of the art in the analysis of two-dimensional gel electrophoresis images.
Published in:
Applied Microbiology & Biotechnology, 2007, v. 76, n. 6, p. 1223, doi. 10.1007/s00253-007-1128-0
By:
- Berth, Matthias;
- Moser, Frank Michael;
- Kolbe, Markus;
- Bernhardt, Jörg
Publication type:
Article
Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.
Published in:
Scientific Reports, 2016, p. 28172, doi. 10.1038/srep28172
By:
- Zühlke, Daniela;
- Dörries, Kirsten;
- Bernhardt, Jörg;
- Maaß, Sandra;
- Muntel, Jan;
- Liebscher, Volkmar;
- Pané-Farré, Jan;
- Riedel, Katharina;
- Lalk, Michael;
- Völker, Uwe;
- Engelmann, Susanne;
- Becher, Dörte;
- Fuchs, Stephan;
- Hecker, Michael
Publication type:
Article
The Effect of Allicin on the Proteome of SARS-CoV-2 Infected Calu-3 Cells.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.746795
By:
- Mösbauer, Kirstin;
- Fritsch, Verena Nadin;
- Adrian, Lorenz;
- Bernhardt, Jörg;
- Gruhlke, Martin Clemens Horst;
- Slusarenko, Alan John;
- Niemeyer, Daniela;
- Antelmann, Haike
Publication type:
Article
A Proteomic View of an Important Human Pathogen - Towards the Quantification of the Entire Staphylococcus aureus Proteome.
Published in:
PLoS ONE, 2009, v. 4, n. 12, p. 1, doi. 10.1371/journal.pone.0008176
By:
- Becher, Dörte;
- Hempel, Kristina;
- Sievers, Susanne;
- Zühlke, Daniela;
- Pané-Farré, Jan;
- Otto, Andreas;
- Fuchs, Stephan;
- Albrecht, Dirk;
- Bernhardt, Jörg;
- Engelmann, Susanne;
- Völker, Uwe;
- Maarten van Dijl, Jan;
- Hecker, Michael
Publication type:
Article
A proteomic approach for the identification of immunotoxic properties of Tulipalin A.
Published in:
Proteomics, 2016, v. 16, n. 23, p. 2997, doi. 10.1002/pmic.201600130
By:
- Zwicker, Paula;
- Schultze, Nadin;
- Niehs, Sarah;
- Methling, Karen;
- Wurster, Martina;
- Albrecht, Dirk;
- Bernhardt, Jörg;
- Wachlin, Gerhild;
- Lalk, Michael;
- Lindequist, Ulrike;
- Haertel, Beate
Publication type:
Article
A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
Published in:
Proteomics, 2015, v. 15, n. 21, p. 3648, doi. 10.1002/pmic.201500091
By:
- Depke, Maren;
- Michalik, Stephan;
- Rabe, Alexander;
- Surmann, Kristin;
- Brinkmann, Lars;
- Jehmlich, Nico;
- Bernhardt, Jörg;
- Hecker, Michael;
- Wollscheid, Bernd;
- Sun, Zhi;
- Moritz, Robert L.;
- Völker, Uwe;
- Schmidt, Frank
Publication type:
Article
Metaproteomics to unravel major microbial players in leaf litter and soil environments: Challenges and perspectives.
Published in:
Proteomics, 2013, v. 13, n. 18/19, p. 2895, doi. 10.1002/pmic.201300095
By:
- Becher, Dörte;
- Bernhardt, Jörg;
- Fuchs, Stephan;
- Riedel, Katharina
Publication type:
Article
Data visualization in environmental proteomics.
Published in:
Proteomics, 2013, v. 13, n. 18/19, p. 2805, doi. 10.1002/pmic.201300167
By:
- Mehlan, Henry;
- Schmidt, Frank;
- Weiss, Stefan;
- Schüler, Julia;
- Fuchs, Stephan;
- Riedel, Katharina;
- Bernhardt, Jörg
Publication type:
Article
Common versus noble Bacillus subtilis differentially responds to air and argon gas plasma.
Published in:
Proteomics, 2013, v. 13, n. 17, p. 2608, doi. 10.1002/pmic.201200343
By:
- Winter, Theresa;
- Bernhardt, Jörg;
- Winter, Jörn;
- Mäder, Ulrike;
- Schlüter, Rabea;
- Weltmann, Klaus‐Dieter;
- Hecker, Michael;
- Kusch, Harald
Publication type:
Article
Staphylococcus aureus physiological growth limitations: Insights from flux calculations built on proteomics and external metabolite data.
Published in:
Proteomics, 2011, v. 11, n. 10, p. 1915, doi. 10.1002/pmic.201000151
By:
- Liang, Chunguang;
- Liebeke, Manuel;
- Schwarz, Roland;
- Zühlke, Daniela;
- Fuchs, Stephan;
- Menschner, Leonhard;
- Engelmann, Susanne;
- Wolz, Christiane;
- Jaglitz, Sarah;
- Bernhardt, Jörg;
- Hecker, Michael;
- Lalk, Michael;
- Dandekar, Thomas
Publication type:
Article
Protecs, a comprehensive and powerful storage and analysis system for OMICS data, applied for profiling the anaerobiosis response of Staphylococcus aureus COL.
Published in:
Proteomics, 2010, v. 10, n. 16, p. 2982, doi. 10.1002/pmic.200900388
By:
- Fuchs, Stephan;
- Mehlan, Henry;
- Kusch, Harald;
- Teumer, Alexander;
- Zühlke, Daniela;
- Berth, Matthias;
- Wolf, Carmen;
- Dandekar, Thomas;
- Hecker, Michael;
- Engelmann, Susanne;
- Bernhardt, Jörg
Publication type:
Article
Time-resolved quantitative proteome profiling of host-pathogen interactions: The response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells.
Published in:
Proteomics, 2010, v. 10, n. 15, p. 2801, doi. 10.1002/pmic.201000045
By:
- Schmidt, Frank;
- Scharf, Sandra S.;
- Hildebrandt, Petra;
- Burian, Marc;
- Bernhardt, Jörg;
- Dhople, Vishnu;
- Kalinka, Julia;
- Gutjahr, Melanie;
- Hammer, Elke;
- Völker, Uwe
Publication type:
Article
Viral myocarditis induced by Coxsackievirus B3 in A.BY/ SnJ mice: Analysis of changes in the myocardial proteome.
Published in:
Proteomics, 2010, v. 10, n. 9, p. 1802, doi. 10.1002/pmic.200900734
By:
- Hammer, Elke;
- Phong, Truong Quoc;
- Steil, Leif;
- Klingel, Karin;
- Salazar, Manuela Gesell;
- Bernhardt, Jörg;
- Kandolf, Reinhard;
- Kroemer, Heyo K.;
- Felix, Stephan B.;
- Völker, Uwe
Publication type:
Article
Two-dimensional proteome reference map for the radiation-resistant bacterium Deinococcus geothermalis.
Published in:
Proteomics, 2010, v. 10, n. 3, p. 555, doi. 10.1002/pmic.200800657
By:
- Liedert, Christina;
- Bernhardt, Jörg;
- Albrecht, Dirk;
- Voigt, Birgit;
- Hecker, Michael;
- Salkinoja-Salonen, Mirja;
- Neubauer, Peter
Publication type:
Article
Proteolysis during long-term glucose starvation in Staphylococcus aureus COL.
Published in:
Proteomics, 2009, v. 9, n. 19, p. 4468, doi. 10.1002/pmic.200900168
By:
- Michalik, Stephan;
- Liebeke, Manuel;
- Zühlke, Daniela;
- Lalk, Michael;
- Bernhardt, Jörg;
- Gerth, Ulf;
- Hecker, Michael
Publication type:
Article
Dynamics of protein phosphorylation on Ser/Thr/Tyr in Bacillus subtilis.
Published in:
Proteomics, 2007, v. 7, n. 19, p. 3509, doi. 10.1002/pmic.200700232
By:
- Eymann, Christine;
- Becher, Dörte;
- Bernhardt, Jörg;
- Gronau, Katrin;
- Klutzny, Anja;
- Hecker, Michael
Publication type:
Article
The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions.
Published in:
Proteomics, 2006, v. 6, n. 1, p. 268, doi. 10.1002/pmic.200500091
By:
- Birgit Voigt;
- Thomas Schweder;
- Mark J. J. B. Sibbald;
- Dirk Albrecht;
- Armin Ehrenreich;
- Jörg Bernhardt;
- Jörg Feesche;
- Karl-Heinz Maurer;
- Gerhard Gottschalk;
- Jan Maarten van Dijl;
- Michael Hecker
Publication type:
Article
A comprehensive proteome map of growing Bacillus subtilis cells.
Published in:
Proteomics, 2004, v. 4, n. 10, p. 2849, doi. 10.1002/pmic.200400907
By:
- Christine Eymann;
- Annette Dreisbach;
- Dirk Albrecht;
- Jörg Bernhardt;
- Dörte Becher;
- Sandy Gentner;
- Le Thi Tam;
- Knut Büttner;
- Gerrit Buurman;
- Christian Scharf;
- Simone Venz;
- Uwe Völker;
- Michael Hecker
Publication type:
Article
Using standard positions and image fusion to create proteome maps from collections of two-dimensional gel electrophoresis images.
Published in:
Proteomics, 2003, v. 3, n. 7, p. 1117, doi. 10.1002/pmic.200300433
By:
- Sven Luhn;
- Matthias Berth;
- Michael Hecker;
- Jörg Bernhardt
Publication type:
Article
RNase Y of Staphylococcus aureus and its role in the activation of virulence genes.
Published in:
Molecular Microbiology, 2012, v. 85, n. 5, p. 817, doi. 10.1111/j.1365-2958.2012.08144.x
By:
- Marincola, Gabriella;
- Schäfer, Tina;
- Behler, Juliane;
- Bernhardt, Jörg;
- Ohlsen, Knut;
- Goerke, Christiane;
- Wolz, Christiane
Publication type:
Article
Different Evolutionary Modifications as a Guide to Rewire Two-Component Systems.
Published in:
Bioinformatics & Biology Insights, 2012, n. 6, p. 97, doi. 10.4137/BBI.S9356
By:
- Krueger, Beate;
- Friedrich, Torben;
- Förster, Frank;
- Bernhardt, Jörg;
- Gross, Roy;
- Dandekar, Thomas
Publication type:
Article
Pan-Tetris: an interactive visualisation for Pan-genomes.
Published in:
BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S11-S3
By:
- Hennig, André;
- Bernhardt, Jörg;
- Nieselt, Kay
Publication type:
Article
A comprehensive two-dimensional map of cytosolic proteins of Bacillus subtilis.
Published in:
Electrophoresis, 2001, v. 22, n. 14, p. 2908, doi. 10.1002/1522-2683(200108)22:14<2908::AID-ELPS2908>3.0.CO;2-M
By:
- Büttner, Knut;
- Bernhardt, Jörg;
- Scharf, Christian;
- Schmid, Roland;
- Mäder, Ulrike;
- Eymann, Christine;
- Antelmann, Heike;
- Völker, Andrea;
- Völker, Uwe;
- Hecker, Michael
Publication type:
Article
Dual channel imaging of two-dimensional electropherograms in Bacillus subtilis.
Published in:
Electrophoresis, 1999, v. 20, n. 11, p. 2225, doi. 10.1002/(SICI)1522-2683(19990801)20:11<2225::AID-ELPS2225>3.0.CO;2-8
By:
- Bernhardt, Jörg;
- Büttner, Knut;
- Scharf, Christian;
- Hecker, Michael
Publication type:
Article
First steps from a two-dimensional protein index towards a response-regulation map for Bacillus subtilis.
Published in:
Electrophoresis, 1997, v. 18, n. 8, p. 1451, doi. 10.1002/elps.1150180820
By:
- Antelmann, Haike;
- Bernhardt, Jörg;
- Schmid, Roland;
- Mach, Hiltraut;
- Völker, Uwe;
- Hecker, Michael
Publication type:
Article
A Major Renal Artery Aneurysm as the Cause of a Hydronephrosis with Renovascular Hypertension.
Published in:
Urologia Internationalis, 1996, v. 57, n. 4, p. 237, doi. 10.1159/000282923
By:
- Bernhardt, Jörg;
- Zwicker, Christian;
- Hering, Michael;
- El Saman, Moukhtar;
- Pfitzenmaier, Norbert
Publication type:
Article
A Multi-Omics Protocol for Swine Feces to Elucidate Longitudinal Dynamics in Microbiome Structure and Function.
Published in:
Microorganisms, 2020, v. 8, n. 12, p. 1887, doi. 10.3390/microorganisms8121887
By:
- Gierse, Laurin Christopher;
- Meene, Alexander;
- Schultz, Daniel;
- Schwaiger, Theresa;
- Karte, Claudia;
- Schröder, Charlotte;
- Wang, Haitao;
- Wünsche, Christine;
- Methling, Karen;
- Kreikemeyer, Bernd;
- Fuchs, Stephan;
- Bernhardt, Jörg;
- Becher, Dörte;
- Lalk, Michael;
- Study Group, KoInfekt;
- Urich, Tim;
- Riedel, Katharina
Publication type:
Article
Proteomic profiling of antibiotic‐resistant Escherichia coli GW‐AmxH19 isolated from hospital wastewater treated with physical plasma.
Published in:
Proteomics, 2024, v. 24, n. 19, p. 1, doi. 10.1002/pmic.202300494
By:
- Hahn, Veronika;
- Zühlke, Daniela;
- Winter, Hauke;
- Landskron, Annchristin;
- Bernhardt, Jörg;
- Sievers, Susanne;
- Schmidt, Michael;
- von Woedtke, Thomas;
- Riedel, Katharina;
- Kolb, Juergen F.
Publication type:
Article
Improved Wound Healing of Airway Epithelial Cells Is Mediated by Cold Atmospheric Plasma: A Time Course-Related Proteome Analysis.
Published in:
Oxidative Medicine & Cellular Longevity, 2019, p. 1, doi. 10.1155/2019/7071536
By:
- Scharf, Christian;
- Eymann, Christine;
- Emicke, Philipp;
- Bernhardt, Jörg;
- Wilhelm, Martin;
- Görries, Fabian;
- Winter, Jörn;
- von Woedtke, Thomas;
- Darm, Katrin;
- Daeschlein, Georg;
- Steil, Leif;
- Hosemann, Werner;
- Beule, Achim
Publication type:
Article
Modeling antibiotic and cytotoxic effects of the dimeric isoquinoline IQ-143 on metabolism and its regulation in Staphylococcus aureus, Staphylococcus epidermidis and human cells.
Published in:
Genome Biology, 2011, v. 12, n. 3, p. 1, doi. 10.1186/gb-2011-12-3-r24
By:
- Cecil, Alexander;
- Rikanović, Carina;
- Ohlsen, Knut;
- Liang, Chunguang;
- Bernhardt, Jörg;
- Oelschlaeger, Tobias A.;
- Gulder, Tanja;
- Bringmann, Gerhard;
- Holzgrabe, Ulrike;
- Unger, Matthias;
- Dandekar, Thomas
Publication type:
Article
The Genome of the Obligate Intracellular Parasite Trachipleistophora hominis: New Insights into Microsporidian Genome Dynamics and Reductive Evolution.
Published in:
PLoS Pathogens, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.ppat.1002979
By:
- Heinz, Eva;
- Williams, Tom A.;
- Nakjang, Sirintra;
- Noël, Christophe J.;
- Swan, Daniel C.;
- Goldberg, Alina V.;
- Harris, Simon R.;
- Weinmaier, Thomas;
- Markert, Stephanie;
- Becher, Dörte;
- Bernhardt, Jörg;
- Dagan, Tal;
- Hacker, Christian;
- Lucocq, John M.;
- Schweder, Thomas;
- Rattei, Thomas;
- Hall, Neil;
- Hirt, Robert P.;
- Embley, T. Martin
Publication type:
Article
The Disulfide Stress Response and Protein S-thioallylation Caused by Allicin and Diallyl Polysulfanes in Bacillus subtilis as Revealed by Transcriptomics and Proteomics.
Published in:
Antioxidants, 2019, v. 8, n. 12, p. 605, doi. 10.3390/antiox8120605
By:
- Chi, Bui Khanh;
- Huyen, Nguyen Thi Thu;
- Loi, Vu Van;
- Gruhlke, Martin Clemens Horst;
- Schaffer, Marc;
- Mäder, Ulrike;
- Maaß, Sandra;
- Becher, Dörte;
- Bernhardt, Jörg;
- Arbach, Miriam;
- Hamilton, Chris J.;
- Slusarenko, Alan J.;
- Antelmann, Haike
Publication type:
Article
The Lichens' Microbiota, Still a Mystery?
Published in:
Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.623839
By:
- Grimm, Maria;
- Grube, Martin;
- Schiefelbein, Ulf;
- Zühlke, Daniela;
- Bernhardt, Jörg;
- Riedel, Katharina
Publication type:
Article
Nitric Oxide Modulates Histone Acetylation at Stress Genes by Inhibition of Histone Deacetylases.
Published in:
Plant Physiology, 2017, v. 173, n. 2, p. 1434, doi. 10.1104/pp.16.01734
By:
- Mengel, Alexander;
- Ageeva, Alexandra;
- Georgii, Elisabeth;
- Bernhardt, Jörg;
- Keqiang Wu;
- Durner, Jörg;
- Lindermayr, Christian
Publication type:
Article
Modulation of Protein S-Nitrosylation by Isoprene Emission in Poplar1.
Published in:
Plant Physiology, 2016, v. 170, n. 4, p. 1945, doi. 10.1104/pp.15.01842
By:
- Vanzo, Elisa;
- Merl-Pham, Juliane;
- Velikova, Violeta;
- Ghirardo, Andrea;
- Lindermayr, Christian;
- Hauck, Stefanie M.;
- Bernhardt, Jörg;
- Riedel, Katharina;
- Durner, Jörg;
- Schnitzler, Jörg-Peter
Publication type:
Article
Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells.
Published in:
Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00392
By:
- Surmann, Kristin;
- Michalik, Stephan;
- Hildebrandt, Petra;
- Gierok, Philipp;
- Depke, Maren;
- Brinkmann, Lars;
- Bernhardt, Jörg;
- Salazar, Manuela G.;
- Zhi Sun;
- Shteynberg, David;
- Kusebauch, Ulrike;
- Moritz, Robert L.;
- Wollscheid, Bernd;
- Lalk, Michael;
- Völker, Uwe;
- Schmidt, Frank
Publication type:
Article
Altering gene expression by aminocoumarins: the role of DNA supercoiling in Staphylococcus aureus.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-291
By:
- Schröder, Wiebke;
- Bernhardt, Jörg;
- Marincola, Gabriella;
- Klein-Hitpass, Ludger;
- Herbig, Alexander;
- Krupp, Guido;
- Nieselt, Kay;
- Wolz, Christiane
Publication type:
Article
Time-resolved quantitative proteome profiling of host-pathogen interactions: The response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells.
Published in:
Proteomics - Clinical Applications, 2010, v. 4, n. 10/11, p. 861, doi. 10.1002/prca.201090078
By:
- Schmidt, Frank;
- Scharf, Sandra S.;
- Hildebrandt, Petra;
- Burian, Marc;
- Bernhardt, Jörg;
- Dhople, Vishnu;
- Kalinka, Julia;
- Gutjahr, Melanie;
- Hammer, Elke;
- Völker, Uwe
Publication type:
Article
Viral myocarditis induced by Coxsackievirus B3 in A.BY/ SnJ mice: Analysis of changes in the myocardial proteome.
Published in:
Proteomics - Clinical Applications, 2010, v. 4, n. 8/9, p. 769, doi. 10.1002/prca.201090049
By:
- Hammer, Elke;
- Phong, Truong Quoc;
- Steil, Leif;
- Klingel, Karin;
- Salazar, Manuela Gesell;
- Bernhardt, Jörg;
- Kandolf, Reinhard;
- Kroemer, Heyo K.;
- Felix, Stephan B.;
- Völker, Uwe
Publication type:
Article
A comprehensive genomic, transcriptomic and proteomic analysis of a hyperosmotic stress sensitive α-proteobacterium.
Published in:
BMC Microbiology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12866-015-0404-x
By:
- Kohler, Christian;
- Lourenço, Rogério F.;
- Bernhardt, Jörg;
- Albrecht, Dirk;
- Schüler, Julia;
- Hecker, Michael;
- Gomes, Suely L.
Publication type:
Article
A comprehensive genomic, transcriptomic and proteomic analysis of a hyperosmotic stress sensitive α-proteobacterium
Published in:
BMC Microbiology, 2015, v. 15, n. 1, p. 71, doi. 10.1186/s12866-015-0404-x
By:
- Kohler, Christian;
- Lourenço, Rogério F;
- Bernhardt, Jörg;
- Albrecht, Dirk;
- Schüler, Julia;
- Hecker, Michael;
- Gomes, Suely L
Publication type:
Article

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