Found: 33
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Location, location, (ChIP-)location! Mapping chromatin landscapes one immunoprecipitation at a time.
- Published in:
- Journal of Cellular Biochemistry, 2009, v. 107, n. 1, p. 1, doi. 10.1002/jcb.22133
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- Publication type:
- Article
Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data.
- Published in:
- Genome Biology, 2012, v. 13, n. 7, p. 1, doi. 10.1186/gb-2012-13-7-r61
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- Publication type:
- Article
Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data.
- Published in:
- Genome Biology, 2012, v. 13, n. 7, p. 1, doi. 10.1186/gb-2012-13-7-r61
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- Publication type:
- Article
Identification and characterization of functional risk variants for colorectal cancer mapping to chromosome 11q23.1.
- Published in:
- Human Molecular Genetics, 2014, v. 23, n. 8, p. 2198, doi. 10.1093/hmg/ddt584
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- Publication type:
- Article
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 6, p. e32, doi. 10.1093/nar/gkae097
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- Article
Functional annotation of colon cancer risk SNPs.
- Published in:
- Nature Communications, 2014, v. 5, n. 9, p. 5114, doi. 10.1038/ncomms6114
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- Article
Expanding the MECP2 network using comparative genomics reveals potential therapeutic targets for Rett syndrome.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.67085
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- Publication type:
- Article
DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers.
- Published in:
- Journal of Experimental & Clinical Cancer Research (17569966), 2022, v. 41, n. 1, p. 1, doi. 10.1186/s13046-022-02440-z
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- Publication type:
- Article
DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers.
- Published in:
- Journal of Experimental & Clinical Cancer Research (17569966), 2022, v. 41, n. 1, p. 1, doi. 10.1186/s13046-022-02440-z
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- Publication type:
- Article
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains.
- Published in:
- Nature Genetics, 2012, v. 44, n. 1, p. 40, doi. 10.1038/ng.969
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- Article
Integrated Transcriptomic and Epigenomic Analysis of Primary Human Lung Epithelial Cell Differentiation.
- Published in:
- PLoS Genetics, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pgen.1003513
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- Publication type:
- Article
Functional Enhancers at the Gene-Poor 8q24 Cancer- Linked Locus.
- Published in:
- PLoS Genetics, 2009, v. 5, n. 8, p. 1, doi. 10.1371/journal.pgen.1000597
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- Publication type:
- Article
Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression.
- Published in:
- Nature Communications, 2018, p. 1, doi. 10.1038/s41467-018-06081-9
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- Publication type:
- Article
Locking in on the human methylome.
- Published in:
- Nature Biotechnology, 2009, v. 27, n. 4, p. 341, doi. 10.1038/nbt0409-341
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- Publication type:
- Article
ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles.
- Published in:
- Bioinformatics, 2019, v. 35, n. 11, p. 1974, doi. 10.1093/bioinformatics/bty902
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- Publication type:
- Article
Publisher Correction: A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes.
- Published in:
- 2021
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- Publication type:
- Correction Notice
A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22720-0
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- Publication type:
- Article
Genomic Androgen Receptor-Occupied Regions with Different Functions, Defined by Histone Acetylation, Coregulators and Transcriptional Capacity.
- Published in:
- PLoS ONE, 2008, v. 3, n. 11, p. 1, doi. 10.1371/journal.pone.0003645
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- Publication type:
- Article
Vitamin C Promotes Widespread Yet Specific DNA Demethylation of the Epigenome in Human Embryonic Stem Cells.
- Published in:
- Stem Cells, 2010, v. 28, n. 10, p. 1848, doi. 10.1002/stem.493
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- Publication type:
- Article
Volumetric MRI of the lungs during forced expiration.
- Published in:
- Magnetic Resonance in Medicine, 2016, v. 75, n. 6, p. 2295, doi. 10.1002/mrm.25798
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- Publication type:
- Article
Author Correction: CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes.
- Published in:
- 2024
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- Publication type:
- Correction Notice
CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03275-x
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- Publication type:
- Article
Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03035-3
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- Publication type:
- Article
Multiscale representation of genomic signals.
- Published in:
- Nature Methods, 2014, v. 11, n. 6, p. 689, doi. 10.1038/nmeth.2924
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- Publication type:
- Article
Activation of bivalent factor DLX5 cooperates with master regulator TP63 to promote squamous cell carcinoma.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 16, p. 9246, doi. 10.1093/nar/gkab679
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- Publication type:
- Article
Super-enhancer-associated MEIS1 promotes transcriptional dysregulation in Ewing sarcoma in co-operation with EWS-FLI1.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 3, p. 1255, doi. 10.1093/nar/gky1207
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- Publication type:
- Article
FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 18, p. e139, doi. 10.1093/nar/gks542
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- Publication type:
- Article
Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 8, p. 3538, doi. 10.1093/nar/gkr1219
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- Publication type:
- Article
Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02710-1
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- Publication type:
- Article
Non-coding somatic mutations converge on the PAX8 pathway in ovarian cancer.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15951-0
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- Article
Exploring the cancer methylome.
- Published in:
- 2012
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- Publication type:
- Abstract
GENAVi: a shiny web application for gene expression normalization, analysis and visualization.
- Published in:
- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6073-7
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- Publication type:
- Article
Inferring regulatory element landscapes and transcription factor networks from cancer methylomes.
- Published in:
- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0668-3
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- Publication type:
- Article