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Neoantigen-specific CD8 T cell responses in the peripheral blood following PD-L1 blockade might predict therapy outcome in metastatic urothelial carcinoma.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29342-0
By:
- Holm, Jeppe Sejerø;
- Funt, Samuel A.;
- Borch, Annie;
- Munk, Kamilla Kjærgaard;
- Bjerregaard, Anne-Mette;
- Reading, James L.;
- Maher, Colleen;
- Regazzi, Ashley;
- Wong, Phillip;
- Al-Ahmadie, Hikmat;
- Iyer, Gopa;
- Tamhane, Tripti;
- Bentzen, Amalie Kai;
- Herschend, Nana Overgaard;
- De Wolf, Susan;
- Snyder, Alexandra;
- Merghoub, Taha;
- Wolchok, Jedd D.;
- Nielsen, Morten;
- Rosenberg, Jonathan E.
Publication type:
Article
NetTCR-2.0 enables accurate prediction of TCR-peptide binding by using paired TCRα and β sequence data.
Published in:
Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02610-3
By:
- Montemurro, Alessandro;
- Schuster, Viktoria;
- Povlsen, Helle Rus;
- Bentzen, Amalie Kai;
- Jurtz, Vanessa;
- Chronister, William D.;
- Crinklaw, Austin;
- Hadrup, Sine R.;
- Winther, Ole;
- Peters, Bjoern;
- Jessen, Leon Eyrich;
- Nielsen, Morten
Publication type:
Article
Neoantigen-specific CD8 T cell responses in the peripheral blood following PD-L1 blockade might predict therapy outcome in metastatic urothelial carcinoma.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29342-0
By:
- Holm, Jeppe Sejerø;
- Funt, Samuel A.;
- Borch, Annie;
- Munk, Kamilla Kjærgaard;
- Bjerregaard, Anne-Mette;
- Reading, James L.;
- Maher, Colleen;
- Regazzi, Ashley;
- Wong, Phillip;
- Al-Ahmadie, Hikmat;
- Iyer, Gopa;
- Tamhane, Tripti;
- Bentzen, Amalie Kai;
- Herschend, Nana Overgaard;
- De Wolf, Susan;
- Snyder, Alexandra;
- Merghoub, Taha;
- Wolchok, Jedd D.;
- Nielsen, Morten;
- Rosenberg, Jonathan E.
Publication type:
Article
Large-scale detection of antigen-specific T cells using peptide-MHC-I multimers labeled with DNA barcodes.
Published in:
Nature Biotechnology, 2016, v. 34, n. 10, p. 1037, doi. 10.1038/nbt.3662
By:
- Bentzen, Amalie Kai;
- Marquard, Andrea Marion;
- Lyngaa, Rikke;
- Saini, Sunil Kumar;
- Ramskov, Sofie;
- Donia, Marco;
- Such, Lina;
- Furness, Andrew J S;
- McGranahan, Nicholas;
- Rosenthal, Rachel;
- Straten, Per thor;
- Szallasi, Zoltan;
- Svane, Inge Marie;
- Swanton, Charles;
- Quezada, Sergio A;
- Jakobsen, Søren Nyboe;
- Eklund, Aron Charles;
- Hadrup, Sine Reker
Publication type:
Article
Tumor-Infiltrating T Cells From Clear Cell Renal Cell Carcinoma Patients Recognize Neoepitopes Derived From Point and Frameshift Mutations.
Published in:
Frontiers in Immunology, 2020, p. 1, doi. 10.3389/fimmu.2020.00373
By:
- Hansen, Ulla Kring;
- Ramskov, Sofie;
- Bjerregaard, Anne-Mette;
- Borch, Annie;
- Andersen, Rikke;
- Draghi, Arianna;
- Donia, Marco;
- Bentzen, Amalie Kai;
- Marquard, Andrea Marion;
- Szallasi, Zoltan;
- Eklund, Aron Charles;
- Svane, Inge Marie;
- Hadrup, Sine Reker
Publication type:
Article
CD8<sup>+</sup> T cells from patients with narcolepsy and healthy controls recognize hypocretin neuron-specific antigens.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08774-1
By:
- Pedersen, Natasja Wulff;
- Holm, Anja;
- Kristensen, Nikolaj Pagh;
- Bjerregaard, Anne-Mette;
- Bentzen, Amalie Kai;
- Marquard, Andrea Marion;
- Tamhane, Tripti;
- Burgdorf, Kristoffer Sølvsten;
- Ullum, Henrik;
- Jennum, Poul;
- Knudsen, Stine;
- Hadrup, Sine Reker;
- Kornum, Birgitte Rahbek
Publication type:
Article
Improved T cell receptor antigen pairing through data- driven filtering of sequencing information from single cells.
Published in:
eLife, 2023, p. 1, doi. 10.7554/eLife.81810
By:
- Povlsen, Helle Rus;
- Bentzen, Amalie Kai;
- Kadivar, Mohammad;
- Jessen, Leon Eyrich;
- Hadrup, Sine Reker;
- Nielsen, Morten
Publication type:
Article
Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19464-8
By:
- Saini, Sunil Kumar;
- Ørskov, Andreas Due;
- Bjerregaard, Anne-Mette;
- Unnikrishnan, Ashwin;
- Holmberg-Thydén, Staffan;
- Borch, Annie;
- Jensen, Kathrine Valentini;
- Anande, Govardhan;
- Bentzen, Amalie Kai;
- Marquard, Andrea Marion;
- Tamhane, Tripti;
- Treppendahl, Marianne Bach;
- Gang, Anne Ortved;
- Dufva, Inge Høgh;
- Szallasi, Zoltan;
- Ternette, Nicola;
- Pedersen, Anders Gorm;
- Eklund, Aron Charles;
- Pimanda, John;
- Grønbæk, Kirsten
Publication type:
Article

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