Found: 11

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  • Integrative meta-omics in Galaxy and beyond.

    Published in:
    Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00514-9
    By:
    • Schiml, Valerie C.;
    • Delogu, Francesco;
    • Kumar, Praveen;
    • Kunath, Benoit;
    • Batut, Bérénice;
    • Mehta, Subina;
    • Johnson, James E.;
    • Grüning, Björn;
    • Pope, Phillip B.;
    • Jagtap, Pratik D.;
    • Griffin, Timothy J.;
    • Arntzen, Magnus Ø.
    Publication type:
    Article

  • The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

    Published in:
    Nucleic Acids Research, 2018, v. 46, n. W1, p. W537, doi. 10.1093/nar/gky379
    By:
    • Afgan, Enis;
    • Baker, Dannon;
    • Batut, Bérénice;
    • van den Beek, Marius;
    • Bouvier, Dave;
    • Čech, Martin;
    • Chilton, John;
    • Clements, Dave;
    • Coraor, Nate;
    • Grüning, Björn A
    Publication type:
    Article

  • The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. W1, p. W560, doi. 10.1093/nar/gkx409
    By:
    • Grüning, Björn A.;
    • Fallmann, Jörg;
    • Yusuf, Dilmurat;
    • Will, Sebastian;
    • Erxleben, Anika;
    • Eggenhofer, Florian;
    • Houwaart, Torsten;
    • Batut, Bérénice;
    • Videm, Pavankumar;
    • Bagnacani, Andrea;
    • Wolfien, Markus;
    • Lott, Steffen C.;
    • Hoogstrate, Youri;
    • Hess, Wolfgang R.;
    • Wolkenhauer, Olaf;
    • Hoffmann, Steve;
    • Akalin, Altuna;
    • Ohler, Uwe;
    • Stadler, Peter F.;
    • Backofen, Rolf
    Publication type:
    Article

  • An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond.

    Published in:
    PLoS ONE, 2023, v. 18, n. 11, p. 1, doi. 10.1371/journal.pone.0293879
    By:
    • Williams, Jason J.;
    • Tractenberg, Rochelle E.;
    • Batut, Bérénice;
    • Becker, Erin A.;
    • Brown, Anne M.;
    • Burke, Melissa L.;
    • Busby, Ben;
    • Cooch, Nisha K.;
    • Dillman, Allissa A.;
    • Donovan, Samuel S.;
    • Doyle, Maria A.;
    • van Gelder, Celia W. G.;
    • Hall, Christina R.;
    • Hertweck, Kate L.;
    • Jordan, Kari L.;
    • Jungck, John R.;
    • Latour, Ainsley R.;
    • Lindvall, Jessica M.;
    • Lloret-Llinares, Marta;
    • McDowell, Gary S.
    Publication type:
    Article

  • A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.

    Published in:
    GigaScience, 2020, v. 9, n. 10, p. 1, doi. 10.1093/gigascience/giaa102
    By:
    • Tekman, Mehmet;
    • Batut, Bérénice;
    • Ostrovsky, Alexander;
    • Antoniewski, Christophe;
    • Clements, Dave;
    • Ramirez, Fidel;
    • Etherington, Graham J;
    • Hotz, Hans-Rudolf;
    • Scholtalbers, Jelle;
    • Manning, Jonathan R;
    • Bellenger, Lea;
    • Doyle, Maria A;
    • Heydarian, Mohammad;
    • Huang, Ni;
    • Soranzo, Nicola;
    • Moreno, Pablo;
    • Mautner, Stefan;
    • Papatheodorou, Irene;
    • Nekrutenko, Anton;
    • Taylor, James
    Publication type:
    Article

  • ASaiM: a Galaxy-based framework to analyze microbiota data.

    Published in:
    GigaScience, 2018, v. 7, n. 6, p. N.PAG, doi. 10.1093/gigascience/giy057
    By:
    • Batut, Bérénice;
    • Gravouil, Kévin;
    • Defois, Clémence;
    • Hiltemann, Saskia;
    • Brugère, Jean-François;
    • Peyretaillade, Eric;
    • Peyret, Pierre
    Publication type:
    Article

  • In silico experimental evolution: a tool to test evolutionary scenarios.

    Published in:
    BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-s15-s11
    By:
    • Batut, Bérénice;
    • Parsons, David P.;
    • Fischer, Stephan;
    • Beslon, Guillaume;
    • Knibbe, Carole
    Publication type:
    Article

  • Fostering accessible online education using Galaxy as an e-learning platform.

    Published in:
    PLoS Computational Biology, 2021, v. 17, n. 5, p. 1, doi. 10.1371/journal.pcbi.1008923
    By:
    • Serrano-Solano, Beatriz;
    • Föll, Melanie C.;
    • Gallardo-Alba, Cristóbal;
    • Erxleben, Anika;
    • Rasche, Helena;
    • Hiltemann, Saskia;
    • Fahrner, Matthias;
    • Dunning, Mark J.;
    • Schulz, Marcel H.;
    • Scholtz, Beáta;
    • Clements, Dave;
    • Nekrutenko, Anton;
    • Batut, Bérénice;
    • Grüning, Björn A.
    Publication type:
    Article

  • Ten simple rules for making training materials FAIR.

    Published in:
    2020
    By:
    • Garcia, Leyla;
    • Batut, Bérénice;
    • Burke, Melissa L.;
    • Kuzak, Mateusz;
    • Psomopoulos, Fotis;
    • Arcila, Ricardo;
    • Attwood, Teresa K.;
    • Beard, Niall;
    • Carvalho-Silva, Denise;
    • Dimopoulos, Alexandros C.;
    • del Angel, Victoria Dominguez;
    • Dumontier, Michel;
    • Gurwitz, Kim T.;
    • Krause, Roland;
    • McQuilton, Peter;
    • Le Pera, Loredana;
    • Morgan, Sarah L.;
    • Rauste, Päivi;
    • Via, Allegra;
    • Kahlem, Pascal
    Publication type:
    Editorial

  • Reductive genome evolution at both ends of the bacterial population size spectrum.

    Published in:
    Nature Reviews Microbiology, 2014, v. 12, n. 12, p. 841, doi. 10.1038/nrmicro3331
    By:
    • Batut, Bérénice;
    • Knibbe, Carole;
    • Marais, Gabriel;
    • Daubin, Vincent
    Publication type:
    Article

  • RNA workbench 2.0: next generation RNA data analysis.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. W1, p. W511, doi. 10.1093/nar/gkz353
    By:
    • Fallmann, Jörg;
    • Videm, Pavankumar;
    • Bagnacani, Andrea;
    • Batut, Bérénice;
    • Doyle, Maria A;
    • Klingstrom, Tomas;
    • Eggenhofer, Florian;
    • Stadler, Peter F;
    • Backofen, Rolf;
    • Grüning, Björn
    Publication type:
    Article