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Risk for Infection in Humans after Exposure to Birds Infected with Highly Pathogenic Avian Influenza A(H5N1) Virus, United States, 2022.
Published in:
Emerging Infectious Diseases, 2023, v. 29, n. 6, p. 1215, doi. 10.3201/eid2906.230103
By:
- Kniss, Krista;
- Sumner, Kelsey M.;
- Tastad, Katie J.;
- Lewis, Nathaniel M.;
- Jansen, Lauren;
- Julian, Derek;
- Reh, Mike;
- Carlson, Emily;
- Williams, Robin;
- Koirala, Samir;
- Buss, Bryan;
- Donahue, Matthew;
- Palm, Jennifer;
- Kollmann, Leslie;
- Holzbauer, Stacy;
- Levine, Min Z.;
- Davis, Todd;
- Barnes, John R.;
- Flannery, Brendan;
- Brammer, Lynnette
Publication type:
Article
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States.
Published in:
Emerging Infectious Diseases, 2022, v. 28, n. 7, p. 1442, doi. 10.3201/eid2807.220526
By:
- Lacek, Kristine A.;
- Rambo-Martin, Benjamin L.;
- Batra, Dhwani;
- Xiao-yu Zheng;
- Hassell, Norman;
- Sakaguchi, Hitoshi;
- Peacock, Thomas;
- Groves, Natalie;
- Keller, Matthew;
- Wilson, Malania M.;
- Sheth, Mili;
- Davis, Morgan L.;
- Borroughs, Mark;
- Gerhart, Jonathan;
- Shepard, Samuel S.;
- Cook, Peter W.;
- Lee, Justin;
- Wentworth, David E.;
- Barnes, John R.;
- Kondor, Rebecca
Publication type:
Article
Antiviral Drug-Resistant Influenza B Viruses Carrying H134N Substitution in Neuraminidase, Laos, February 2016.
Published in:
2017
By:
- Baranovich, Tatiana;
- Vongphrachanh, Phengta;
- Ketmayoon, Pakapak;
- Sisouk, Thongchanh;
- Chomlasack, Khampheng;
- Khanthamaly, Viengphone;
- Nguyen, Ha Thuy;
- Mishin, Vasiliy P.;
- Marjuki, Henju;
- Barnes, John R.;
- Garten, Rebecca J.;
- Stevens, James;
- Wentworth, David E.;
- Gubareva, Larisa V.
Publication type:
journal article
Detection and discrimination of influenza B Victoria lineage deletion variant viruses by real-time RT-PCR.
Published in:
Eurosurveillance (15607917), 2020, v. 25, n. 41, p. 7, doi. 10.2807/1560-7917.ES.2020.25.41.1900652
By:
- Bo Shu;
- Kirby, Marie K.;
- Warnes, Christine;
- Sessions, Wendy M.;
- Davis, William G.;
- Ji Liu;
- Wilson, Malania M.;
- Lindstrom, Stephen;
- Wentworth, David E.;
- Barnes, John R.
Publication type:
Article
Late‐Season Influenza Vaccine Effectiveness Against Medically Attended Outpatient Illness, United States, December 2022–April 2023.
Published in:
Influenza & Other Respiratory Viruses, 2024, v. 18, n. 6, p. 1, doi. 10.1111/irv.13342
By:
- Chung, Jessie R.;
- Shirk, Philip;
- Gaglani, Manjusha;
- Mutnal, Manohar B.;
- Nowalk, Mary Patricia;
- Moehling Geffel, Krissy;
- House, Stacey L.;
- Curley, Tara;
- Wernli, Karen J.;
- Kiniry, Erika L.;
- Martin, Emily T.;
- Vaughn, Ivana A.;
- Murugan, Vel;
- Lim, Efrem S.;
- Saade, Elie;
- Faryar, Kiran;
- Williams, Olivia L.;
- Walter, Emmanuel B.;
- Price, Ashley M.;
- Barnes, John R.
Publication type:
Article
In‐field detection and characterization of B/Victoria lineage deletion variant viruses causing early influenza activity and an outbreak in Louisiana, 2019.
Published in:
Influenza & Other Respiratory Viruses, 2024, v. 18, n. 1, p. 1, doi. 10.1111/irv.13246
By:
- Shu, Bo;
- Wilson, Malania M.;
- Keller, Matthew W.;
- Tran, Ha;
- Sokol, Theresa;
- Lee, Grace;
- Rambo‐Martin, Benjamin L.;
- Kirby, Marie K.;
- Hassell, Norman;
- Haydel, Danielle;
- Hand, Julie;
- Wentworth, David E.;
- Barnes, John R.
Publication type:
Article
Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections.
Published in:
PLoS Pathogens, 2024, v. 20, n. 4, p. 1, doi. 10.1371/journal.ppat.1012131
By:
- VanInsberghe, David;
- McBride, Dillon S.;
- DaSilva, Juliana;
- Stark, Thomas J.;
- Lau, Max S. Y.;
- Shepard, Samuel S.;
- Barnes, John R.;
- Bowman, Andrew S.;
- Lowen, Anice C.;
- Koelle, Katia
Publication type:
Article
Outbreak of Highly Pathogenic Avian Influenza A(H5N1) Viruses in U.S. Dairy Cattle and Detection of Two Human Cases -- United States, 2024.
Published in:
MMWR: Morbidity & Mortality Weekly Report, 2024, v. 73, n. 21, p. 501, doi. 10.15585/mmwr.mm7321e1
By:
- Garg, Shikha;
- Reed, Carrie;
- Davis, C. Todd;
- Uyeki, Timothy M.;
- Behravesh, Casey Barton;
- Kniss, Krista;
- Budd, Alicia;
- Biggerstaff, Matthew;
- Adjemian, Jennifer;
- Barnes, John R.;
- Kirby, Marie K.;
- Basler, Colin;
- Szablewski, Christine M.;
- Richmond-Crum, Malia;
- Burns, Erin;
- Limbago, Brandi;
- Daskalakis, Demetre C.;
- Armstrong, Kimberly;
- Boucher, David;
- Shimabukuro, Tom T.
Publication type:
Article
Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution.
Published in:
eLife, 2020, p. 1, doi. 10.7554/eLife.60067
By:
- Huddleston, John;
- Barnes, John R.;
- Rowe, Thomas;
- Xiyan Xu;
- Kondor, Rebecca;
- Wentworth, David E.;
- Whittaker, Lynne;
- Ermetal, Burcu;
- Daniels, Rodney Stuart;
- McCauley, John W.;
- Seiichiro Fujisaki;
- Kazuya Nakamura;
- Noriko Kishida;
- Shinji Watanabe;
- Hideki Hasegawa;
- Barr, Ian;
- Subbarao, Kanta;
- Barrat-Charlaix, Pierre;
- Neher, Richard A.;
- Bedford, Trevor
Publication type:
Article
Enhanced Genetic Characterization of Influenza A(H3N2) Viruses and Vaccine Effectiveness by Genetic Group, 2014-2015.
Published in:
2016
By:
- Flannery, Brendan;
- Zimmerman, Richard K.;
- Gubareva, Larisa V.;
- Garten, Rebecca J.;
- Chung, Jessie R.;
- Nowalk, Mary Patricia;
- Jackson, Michael L.;
- Jackson, Lisa A.;
- Monto, Arnold S.;
- Ohmit, Suzanne E.;
- Belongia, Edward A.;
- McLean, Huong Q.;
- Gaglani, Manjusha;
- Piedra, Pedro A.;
- Mishin, Vasiliy P.;
- Chesnokov, Anton P.;
- Spencer, Sarah;
- Thaker, Swathi N.;
- Barnes, John R.;
- Foust, Angie
Publication type:
journal article
Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States.
Published in:
eLife, 2024, p. 1, doi. 10.7554/eLife.91849
By:
- Perofsky, Amanda C.;
- Huddleston, John;
- Hansen, Chelsea L.;
- Barnes, John R.;
- Rowe, Thomas;
- Xiyan Xu;
- Kondor, Rebecca;
- Wentworth, David E.;
- Lewis, Nicola;
- Whittaker, Lynne;
- Ermetal, Burcu;
- Harvey, Ruth;
- Galiano, Monica;
- Daniels, Rodney Stuart;
- McCauley, John W.;
- Seiichiro Fujisaki;
- Kazuya Nakamura;
- Noriko Kishida;
- Shinji Watanabe;
- Hideki Hasegawa
Publication type:
Article
Calculations of periodicity from Hα profiles of Proxima Centauri.
Published in:
Astronomy & Astrophysics / Astronomie et Astrophysique, 2017, v. 602, p. 1, doi. 10.1051/0004-6361/201628827
By:
- Collins, John M.;
- Jones, Hugh R. A.;
- Barnes, John R.
Publication type:
Article
Discriminating North American Swine Influenza Viruses with a Portable, One-Step, Triplex Real-Time RT-PCR Assay, and Portable Sequencing.
Published in:
Viruses (1999-4915), 2024, v. 16, n. 10, p. 1557, doi. 10.3390/v16101557
By:
- Kirby, Marie K.;
- Shu, Bo;
- Keller, Matthew W.;
- Wilson, Malania M.;
- Rambo-Martin, Benjamin L.;
- Jang, Yunho;
- Liddell, Jimma;
- Salinas Duron, Eduardo;
- Nolting, Jacqueline M.;
- Bowman, Andrew S.;
- Davis, C. Todd;
- Wentworth, David E.;
- Barnes, John R.
Publication type:
Article
Characterizing the Countrywide Epidemic Spread of Influenza A(H1N1)pdm09 Virus in Kenya between 2009 and 2018.
Published in:
Viruses (1999-4915), 2021, v. 13, n. 10, p. 1956, doi. 10.3390/v13101956
By:
- Owuor, D. Collins;
- de Laurent, Zaydah R.;
- Kikwai, Gilbert K.;
- Mayieka, Lillian M.;
- Ochieng, Melvin;
- Müller, Nicola F.;
- Otieno, Nancy A.;
- Emukule, Gideon O.;
- Hunsperger, Elizabeth A.;
- Garten, Rebecca;
- Barnes, John R.;
- Chaves, Sandra S.;
- Nokes, D. James;
- Agoti, Charles N.
Publication type:
Article
Avian Influenza A Viruses Reassort and Diversify Differently in Mallards and Mammals.
Published in:
Viruses (1999-4915), 2021, v. 13, n. 3, p. 509, doi. 10.3390/v13030509
By:
- Ganti, Ketaki;
- Bagga, Anish;
- DaSilva, Juliana;
- Shepard, Samuel S.;
- Barnes, John R.;
- Shriner, Susan;
- Koelle, Katia;
- Lowen, Anice C.;
- Bielefeldt-Ohmann, Helle
Publication type:
Article
Effect of Antigenic Drift on Influenza Vaccine Effectiveness in the United States—2019–2020.
Published in:
Clinical Infectious Diseases, 2021, v. 73, n. 11, p. e4244, doi. 10.1093/cid/ciaa1884
By:
- Tenforde, Mark W;
- Kondor, Rebecca J Garten;
- Chung, Jessie R;
- Zimmerman, Richard K;
- Nowalk, Mary Patricia;
- Jackson, Michael L;
- Jackson, Lisa A;
- Monto, Arnold S;
- Martin, Emily T;
- Belongia, Edward A;
- McLean, Huong Q;
- Gaglani, Manjusha;
- Rao, Arundhati;
- Kim, Sara S;
- Stark, Thomas J;
- Barnes, John R;
- Wentworth, David E;
- Patel, Manish M;
- Flannery, Brendan
Publication type:
Article
Investigation of a Suspect Severe Acute Respiratory Syndrome Coronavirus-2 and Influenza A Mixed Outbreak: Lessons Learned for Long-Term Care Facilities Nationwide.
Published in:
Clinical Infectious Diseases, 2021, v. 73, p. S77, doi. 10.1093/cid/ciab372
By:
- Schrodt, Caroline A;
- Malenfant, Jason H;
- Hunter, Jennifer C;
- Slifka, Kara Jacobs;
- Campbell, Angela;
- Stone, Nimalie;
- Whitehouse, Erin R;
- Wittry, Beth;
- Christensen, Bryan;
- Barnes, John R;
- Brammer, Lynnette;
- Hemarajata, Peera;
- Green, Nicole M;
- Civen, Rachel;
- Gounder, Prabhu P;
- Rao, Agam K
Publication type:
Article
Non-mumps Viral Parotitis During the 2014–2015 Influenza Season in the United States.
Published in:
Clinical Infectious Diseases, 2018, v. 67, n. 4, p. 493, doi. 10.1093/cid/ciy137
By:
- Elbadawi, Lina I;
- Talley, Pamela;
- Rolfes, Melissa A;
- Millman, Alexander J;
- Reisdorf, Erik;
- Kramer, Natalie A;
- Barnes, John R;
- Blanton, Lenee;
- Christensen, Jaime;
- Cole, Stefanie
Publication type:
Article
Influenza-Associated Parotitis During the 2014–2015 Influenza Season in the United States.
Published in:
Clinical Infectious Diseases, 2018, v. 67, n. 4, p. 485, doi. 10.1093/cid/ciy136
By:
- Rolfes, Melissa A;
- Millman, Alexander J;
- Talley, Pamela;
- Elbadawi, Lina I;
- Kramer, Natalie A;
- Barnes, John R;
- Blanton, Lenee;
- Davis, Jeffrey P;
- Cole, Stefanie;
- Dreisig, John J
Publication type:
Article
Interim Estimates of 2019-20 Seasonal Influenza Vaccine Effectiveness - United States, February 2020.
Published in:
MMWR: Morbidity & Mortality Weekly Report, 2020, v. 69, n. 7, p. 177, doi. 10.15585/mmwr.mm6907a1
By:
- Dawood, Fatimah S.;
- Chung, Jessie R.;
- Kim, Sara S.;
- Zimmerman, Richard K.;
- Nowalk, Mary Patricia;
- Jackson, Michael L.;
- Jackson, Lisa A.;
- Monto, Arnold S.;
- Martin, Emily T.;
- Belongia, Edward A.;
- McLean, Huong Q.;
- Gaglani, Manjusha;
- Dunnigan, Kayan;
- Foust, Angie;
- Sessions, Wendy;
- DaSilva, Juliana;
- Le, Shoshona;
- Stark, Thomas;
- Kondor, Rebecca J.;
- Barnes, John R.
Publication type:
Article
Interim Estimates of 2018-19 Seasonal Influenza Vaccine Effectiveness - United States, February 2019.
Published in:
2019
By:
- Doyle, Joshua D.;
- Chung, Jessie R.;
- Kim, Sara S.;
- Gaglani, Manjusha;
- Raiyani, Chandni;
- Zimmerman, Richard K.;
- Nowalk, Mary Patricia;
- Jackson, Michael L.;
- Jackson, Lisa A.;
- Monto, Arnold S.;
- Martin, Emily T.;
- Belongia, Edward A.;
- McLean, Huong Q.;
- Foust, Angie;
- Sessions, Wendy;
- Berman, LaShondra;
- Garten, Rebecca J.;
- Barnes, John R.;
- Wentworth, David E.;
- Fry, Alicia M.
Publication type:
journal article
Interim Estimates of 2017-18 Seasonal Influenza Vaccine Effectiveness - United States, February 2018.
Published in:
2018
By:
- Flannery, Brendan;
- Chung, Jessie R.;
- Belongia, Edward A.;
- McLean, Huong Q.;
- Gaglani, Manjusha;
- Murthy, Kempapura;
- Zimmerman, Richard K.;
- Nowalk, Mary Patricia;
- Jackson, Michael L.;
- Jackson, Lisa A.;
- Monto, Arnold S.;
- Martin, Emily T.;
- Foust, Angie;
- Sessions, Wendy;
- Berman, LaShondra;
- Barnes, John R.;
- Spencer, Sarah;
- Fry, Alicia M.
Publication type:
journal article
Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.
Published in:
Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-32615-8
By:
- Keller, Matthew W.;
- Rambo-Martin, Benjamin L.;
- Wilson, Malania M.;
- Ridenour, Callie A.;
- Shepard, Samuel S.;
- Stark, Thomas J.;
- Neuhaus, Elizabeth B.;
- Dugan, Vivien G.;
- Wentworth, David E.;
- Barnes, John R.
Publication type:
Article
Influenza Vaccine Effectiveness Against Hospitalization in the United States, 2019-2020.
Published in:
2021
By:
- Tenforde, Mark W;
- Talbot, H Keipp;
- Trabue, Christopher H;
- Gaglani, Manjusha;
- McNeal, Tresa M;
- Monto, Arnold S;
- Martin, Emily T;
- Zimmerman, Richard K;
- Silveira, Fernanda P;
- Middleton, Donald B;
- Olson, Samantha M;
- Kondor, Rebecca J Garten;
- Barnes, John R;
- Ferdinands, Jill M;
- Patel, Manish M;
- Investigators, Hospitalized Adult Influenza Vaccine Effectiveness Network (HAIVEN);
- Silveira, Fernanda;
- Garten Kondor, Rebecca J;
- HAIVEN Investigators;
- Hospitalized Adult Influenza Vaccine Effectiveness Network (HAIVEN) Investigators
Publication type:
journal article
Spread of Antigenically Drifted Influenza A(H3N2) Viruses and Vaccine Effectiveness in the United States During the 2018-2019 Season.
Published in:
2020
By:
- Flannery, Brendan;
- Kondor, Rebecca J Garten;
- Chung, Jessie R;
- Gaglani, Manjusha;
- Reis, Michael;
- Zimmerman, Richard K;
- Nowalk, Mary Patricia;
- Jackson, Michael L;
- Jackson, Lisa A;
- Monto, Arnold S;
- Martin, Emily T;
- Belongia, Edward A;
- McLean, Huong Q;
- Kim, Sara S;
- Blanton, Lenee;
- Kniss, Krista;
- Budd, Alicia P;
- Brammer, Lynnette;
- Stark, Thomas J;
- Barnes, John R
Publication type:
journal article
Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009–2018 influenza seasons.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-49157-3
By:
- Owuor, D. Collins;
- de Laurent, Zaydah R.;
- Nyawanda, Bryan O.;
- Emukule, Gideon O.;
- Kondor, Rebecca;
- Barnes, John R.;
- Nokes, D. James;
- Agoti, Charles N.;
- Chaves, Sandra S.
Publication type:
Article

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