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Microbial communities colonising plastics during transition from the wastewater treatment plant to marine waters.
Published in:
Environmental Microbiome, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s40793-024-00569-2
By:
- Tulloch, Constance L.;
- Bargiela, Rafael;
- Williams, Gwion B.;
- Chernikova, Tatyana N.;
- Cotterell, Benjamin M.;
- Wellington, Elizabeth M. H.;
- Christie-Oleza, Joseph;
- Thomas, David N.;
- Jones, Davey L.;
- Golyshin, Peter N.
Publication type:
Article
Evolutionary patterns of archaea predominant in acidic environment.
Published in:
Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00518-5
By:
- Bargiela, Rafael;
- Korzhenkov, Aleksei A.;
- McIntosh, Owen A.;
- Toshchakov, Stepan V.;
- Yakimov, Mikhail M.;
- Golyshin, Peter N.;
- Golyshina, Olga V.
Publication type:
Article
Nutrient optimization in bioleaching: are we overdosing?
Published in:
Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1359991
By:
- Falagán, Carmen;
- Sbaffi, Tomasa;
- Williams, Gwion B.;
- Bargiela, Rafael;
- Dew, David W.;
- Hudson-Edwards, Karen A.
Publication type:
Article
Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36610-0
By:
- Marasco, Ramona;
- Fusi, Marco;
- Coscolín, Cristina;
- Barozzi, Alan;
- Almendral, David;
- Bargiela, Rafael;
- Nutschel, Christina Gohlke neé;
- Pfleger, Christopher;
- Dittrich, Jonas;
- Gohlke, Holger;
- Matesanz, Ruth;
- Sanchez-Carrillo, Sergio;
- Mapelli, Francesca;
- Chernikova, Tatyana N.;
- Golyshin, Peter N.;
- Ferrer, Manuel;
- Daffonchio, Daniele
Publication type:
Article
Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea.
Published in:
Environmental Microbiology Reports, 2014, v. 6, n. 6, p. 709, doi. 10.1111/1758-2229.12192
By:
- Yakimov, Michail M.;
- La Cono, Violetta;
- Smedile, Francesco;
- Crisafi, Francesca;
- Arcadi, Erika;
- Leonardi, Marcella;
- Decembrini, Franco;
- Catalfamo, Maurizio;
- Bargiela, Rafael;
- Ferrer, Manuel;
- Golyshin, Peter N.;
- Giuliano, Laura
Publication type:
Article
Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family.
Published in:
Biochemical Journal, 2013, v. 454, n. 1, p. 157, doi. 10.1042/BJ20130552
By:
- ALCAIDE, María;
- TORNÉS, Jesús;
- STOGIOS, Peter J.;
- Xiaohui XU;
- GERTLER, Christoph;
- DI LEO, Rosa;
- BARGIELA, Rafael;
- LAFRAYA, Álvaro;
- GUAZZARONI, María-Eugenia;
- LÓPEZ-CORTÉS, Nieves;
- CHERNIKOVA, Tatyana N.;
- GOLYSHINA, Olga V.;
- NECHITAYLO, Taras Y.;
- PLUMEIER, Iris;
- PIEPER, Dietmar H.;
- YAKIMOV, Michail M.;
- SAVCHENKO, Alexei;
- GOLYSHIN, Peter N.;
- FERRER, Manuel
Publication type:
Article
Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends.
Published in:
Microbial Biotechnology, 2016, v. 9, n. 1, p. 22, doi. 10.1111/1751-7915.12309
By:
- Ferrer, Manuel;
- Martínez-Martínez, Mónica;
- Bargiela, Rafael;
- Streit, Wolfgang R.;
- Golyshina, Olga V.;
- Golyshin, Peter N.
Publication type:
Article
Biochemical studies on a versatile esterase that is most catalytically active with polyaromatic esters.
Published in:
Microbial Biotechnology, 2014, v. 7, n. 2, p. 184, doi. 10.1111/1751-7915.12107
By:
- Martínez-Martínez, Mónica;
- Lores, Iván;
- Peña-García, Carlina;
- Bargiela, Rafael;
- Reyes-Duarte, Dolores;
- Guazzaroni, María-Eugenia;
- Peláez, Ana Isabel;
- Sánchez, Jesús;
- Ferrer, Manuel
Publication type:
Article
Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 6, p. 1259, doi. 10.1038/ismej.2013.242
By:
- Méndez-García, Celia;
- Mesa, Victoria;
- Sprenger, Richard R;
- Richter, Michael;
- Diez, María Suárez;
- Solano, Jennifer;
- Bargiela, Rafael;
- Golyshina, Olga V;
- Manteca, Ángel;
- Ramos, Juan Luis;
- Gallego, José R;
- Llorente, Irene;
- Martins dos Santos, Vitor AP;
- Jensen, Ole N;
- Peláez, Ana I;
- Sánchez, Jesús;
- Ferrer, Manuel
Publication type:
Article
Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 1, p. 122, doi. 10.1038/ismej.2012.82
By:
- Guazzaroni, María-Eugenia;
- Herbst, Florian-Alexander;
- Lores, Iván;
- Tamames, Javier;
- Peláez, Ana Isabel;
- López-Cortés, Nieves;
- Alcaide, María;
- Del Pozo, Mercedes V;
- Vieites, José María;
- von Bergen, Martin;
- Gallego, José Luis R;
- Bargiela, Rafael;
- López-López, Arantxa;
- Pieper, Dietmar H;
- Rosselló-Móra, Ramón;
- Sánchez, Jesús;
- Seifert, Jana;
- Ferrer, Manuel
Publication type:
Article
Biochemical Characterization of Hypothetical Proteins from <i>Helicobacter pylori</i>.
Published in:
PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066605
By:
- Choi, Han-Pil;
- Juarez, Silvia;
- Ciordia, Sergio;
- Fernandez, Marisol;
- Bargiela, Rafael;
- Albar, Juan P.;
- Mazumdar, Varun;
- Anton, Brian P.;
- Kasif, Simon;
- Ferrer, Manuel;
- Steffen, Martin
Publication type:
Article
Gene Sets for Utilization of Primary and Secondary Nutrition Supplies in the Distal Gut of Endangered Iberian Lynx.
Published in:
PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051521
By:
- Alcaide, María;
- Messina, Enzo;
- Richter, Michael;
- Bargiela, Rafael;
- Peplies, Jörg;
- Huws, Sharon A.;
- Newbold, Charles J.;
- Golyshin, Peter N.;
- Simón, Miguel A.;
- López, Guillermo;
- Yakimov, Michail M.;
- Ferrer, Manuel
Publication type:
Article
Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation.
Published in:
Proteomics, 2015, v. 15, n. 20, p. 3508, doi. 10.1002/pmic.201400614
By:
- Bargiela, Rafael;
- Herbst, Florian‐Alexander;
- Martínez‐Martínez, Mónica;
- Seifert, Jana;
- Rojo, David;
- Cappello, Simone;
- Genovese, María;
- Crisafi, Francesca;
- Denaro, Renata;
- Chernikova, Tatyana N.;
- Barbas, Coral;
- Bergen, Martin;
- Yakimov, Michail M.;
- Ferrer, Manuel;
- Golyshin, Peter N.
Publication type:
Article
Relationships between Substrate Promiscuity and Chiral Selectivity of Esterases from Phylogenetically and Environmentally Diverse Microorganisms.
Published in:
Catalysts (2073-4344), 2018, v. 8, n. 1, p. 10, doi. 10.3390/catal8010010
By:
- Coscolín, Cristina;
- Martínez-Martínez, Mónica;
- Chow, Jennifer;
- Bargiela, Rafael;
- García-Moyano, Antonio;
- Bjerga, Gro E. K.;
- Bollinger, Alexander;
- Stokke, Runar;
- Steen, Ida H.;
- Golyshina, Olga V.;
- Yakimov, Michail M.;
- Jaeger, Karl-Erich;
- Yakunin, Alexander F.;
- Streit, Wolfgang R.;
- Golyshin, Peter N.;
- Ferrer, Manuel
Publication type:
Article
Erratum to: Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.
Published in:
2015
By:
- Gertler, Christoph;
- Bargiela, Rafael;
- Mapelli, Francesca;
- Han, Xifang;
- Chen, Jianwei;
- Hai, Tran;
- Amer, Ranya;
- Mahjoubi, Mouna;
- Malkawi, Hanan;
- Magagnini, Mirko;
- Cherif, Ameur;
- Abdel-Fattah, Yasser;
- Kalogerakis, Nicolas;
- Daffonchio, Daniele;
- Ferrer, Manuel;
- Golyshin, Peter
Publication type:
Erratum
Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.
Published in:
Microbial Ecology, 2015, v. 70, n. 3, p. 724, doi. 10.1007/s00248-015-0606-7
By:
- Gertler, Christoph;
- Bargiela, Rafael;
- Mapelli, Francesca;
- Han, Xifang;
- Chen, Jianwei;
- Hai, Tran;
- Amer, Ranya;
- Mahjoubi, Mouna;
- Malkawi, Hanan;
- Magagnini, Mirko;
- Cherif, Ameur;
- Abdel-Fattah, Yasser;
- Kalogerakis, Nicolas;
- Daffonchio, Daniele;
- Ferrer, Manuel;
- Golyshin, Peter
Publication type:
Article
Microbial Diversity of a Disused Copper Mine Site (Parys Mountain, UK), Dominated by Intensive Eukaryotic Filamentous Growth.
Published in:
Microorganisms, 2022, v. 10, n. 9, p. 1694, doi. 10.3390/microorganisms10091694
By:
- Distaso, Marco A.;
- Bargiela, Rafael;
- Johnson, Bethan;
- McIntosh, Owen A.;
- Williams, Gwion B.;
- Jones, Davey L.;
- Golyshin, Peter N.;
- Golyshina, Olga V.
Publication type:
Article
Proteome Cold-Shock Response in the Extremely Acidophilic Archaeon, Cuniculiplasma divulgatum.
Published in:
Microorganisms, 2020, v. 8, n. 5, p. 759, doi. 10.3390/microorganisms8050759
By:
- Bargiela, Rafael;
- Lanthaler, Karin;
- Potter, Colin M.;
- Ferrer, Manuel;
- Yakunin, Alexander F.;
- Paizs, Bela;
- Golyshin, Peter N.;
- Golyshina, Olga V.
Publication type:
Article
Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats.
Published in:
Environmental Microbiology, 2015, v. 17, n. 2, p. 332, doi. 10.1111/1462-2920.12660
By:
- Alcaide, María;
- Stogios, Peter J.;
- Lafraya, Álvaro;
- Tchigvintsev, Anatoli;
- Flick, Robert;
- Bargiela, Rafael;
- Chernikova, Tatyana N.;
- Reva, Oleg N.;
- Hai, Tran;
- Leggewie, Christian C.;
- Katzke, Nadine;
- La Cono, Violetta;
- Matesanz, Ruth;
- Jebbar, Mohamed;
- Jaeger, Karl‐Erich;
- Yakimov, Michail M.;
- Yakunin, Alexander F.;
- Golyshin, Peter N.;
- Golyshina, Olga V.;
- Savchenko, Alexei
Publication type:
Article
Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure.
Published in:
Environmental Microbiology, 2013, v. 15, n. 1, p. 211, doi. 10.1111/j.1462-2920.2012.02845.x
By:
- Ferrer, Manuel;
- Ruiz, Alicia;
- Lanza, Francesca;
- Haange, Sven‐Bastiaan;
- Oberbach, Andreas;
- Till, Holger;
- Bargiela, Rafael;
- Campoy, Cristina;
- Segura, Maria Teresa;
- Richter, Michael;
- von Bergen, Martin;
- Seifert, Jana;
- Suarez, Antonio
Publication type:
Article
Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study.
Published in:
Environmental Microbiology, 2012, v. 14, n. 1, p. 268, doi. 10.1111/j.1462-2920.2011.02634.x
By:
- Ferrer, Manuel;
- Werner, Johannes;
- Chernikova, Tatyana N.;
- Bargiela, Rafael;
- Fernández, Lucía;
- La Cono, Violetta;
- Waldmann, Jost;
- Teeling, Hanno;
- Golyshina, Olga V.;
- Glöckner, Frank Oliver;
- Yakimov, Michail M.;
- Golyshin, Peter N.
Publication type:
Article
Critical Evaluation of Different Passive Sampler Materials and Approaches for the Recovery of SARS-CoV-2, Faecal-Indicator Viruses and Bacteria from Wastewater.
Published in:
Water (20734441), 2022, v. 14, n. 21, p. 3568, doi. 10.3390/w14213568
By:
- Jones, Davey L.;
- Grimsley, Jasmine M. S.;
- Kevill, Jessica L.;
- Williams, Rachel;
- Pellett, Cameron;
- Lambert-Slosarska, Kathryn;
- Singer, Andrew C.;
- Williams, Gwion B.;
- Bargiela, Rafael;
- Brown, Robert W.;
- Wade, Matthew J.;
- Farkas, Kata
Publication type:
Article
Cuniculiplasmataceae, their ecogenomic and metabolic patterns, and interactions with 'ARMAN'.
Published in:
Extremophiles, 2019, v. 23, n. 1, p. 1, doi. 10.1007/s00792-018-1071-2
By:
- Golyshina, Olga V.;
- Bargiela, Rafael;
- Golyshin, Peter N.
Publication type:
Article
Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity.
Published in:
Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0623-8
By:
- Korzhenkov, Aleksei A.;
- Toshchakov, Stepan V.;
- Bargiela, Rafael;
- Gibbard, Huw;
- Ferrer, Manuel;
- Teplyuk, Alina V.;
- Jones, David L.;
- Kublanov, Ilya V.;
- Golyshin, Peter N.;
- Golyshina, Olga V.
Publication type:
Article
Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature.
Published in:
Scientific Reports, 2015, p. 11651, doi. 10.1038/srep11651
By:
- Bargiela, Rafael;
- Mapelli, Francesca;
- Rojo, David;
- Chouaia, Bessem;
- Tornés, Jesús;
- Borin, Sara;
- Richter, Michael;
- Del Pozo, Mercedes V.;
- Cappello, Simone;
- Gertler, Christoph;
- Genovese, María;
- Denaro, Renata;
- Martínez-Martínez, Mónica;
- Fodelianakis, Stilianos;
- Amer, Ranya A.;
- Bigazzi, David;
- Han, Xifang;
- Chen, Jianwei;
- Chernikova, Tatyana N.;
- Golyshina, Olga V.
Publication type:
Article
Ranking the impact of human health disorders on gut metabolism: Systemic lupus erythematosus and obesity as study cases.
Published in:
Scientific Reports, 2015, p. 8310, doi. 10.1038/srep08310
By:
- Rojo, David;
- Hevia, Arancha;
- Bargiela, Rafael;
- López, Patricia;
- Cuervo, Adriana;
- González, Sonia;
- Suárez, Ana;
- Sánchez, Borja;
- Martínez-Martínez, Mónica;
- Milani, Christian;
- Ventura, Marco;
- Barbas, Coral;
- Moya, Andrés;
- Suárez, Antonio;
- Margolles, Abelardo;
- Ferrer, Manuel
Publication type:
Article
Understanding the antimicrobial mechanism of TiO<sub>2</sub>-based nanocomposite films in a pathogenic bacterium.
Published in:
Scientific Reports, 2014, p. 1, doi. 10.1038/srep04134
By:
- Kubacka, Anna;
- Diez, María Suárez;
- Rojo, David;
- Bargiela, Rafael;
- Ciordia, Sergio;
- Zapico, Inés;
- Albar, Juan P.;
- Barbas, Coral;
- Martins dos Santos, Vitor A. P.;
- Fernändez-García, Marcos;
- Ferrer, Manuel
Publication type:
Article
MICROBIOTA-DERIVED METABOLITES ARE POWERFUL BIOMARKERS FOR ANAL CANCER PREVENTION.
Published in:
Topics in Antiviral Medicine, 2023, v. 31, n. 2, p. 61
By:
- Serrano-Villar, Sergio;
- Tincati, Camilla;
- Raju, Sajan C.;
- Saenz Medina, Johan Sebastian;
- Moreno, Elena;
- Bargiela, Rafael;
- Cabello, Alfonso;
- Sendagorta, Elena;
- Pérez-Molina, José A.;
- Roksund, Johaness;
- Fernández-López, Laura;
- de Benito, Amparo;
- Troseid, Marius;
- Seifert, Jana;
- Ferrer, Manuel
Publication type:
Article
Corrigendum: High Representation of Archaea Across All Depths in Oxic and Low-pH Sediment Layers Underlying an Acidic Stream.
Published in:
2021
By:
- Distaso, Marco A.;
- Bargiela, Rafael;
- Brailsford, Francesca L.;
- Williams, Gwion B.;
- Wright, Samuel;
- Lunev, Evgenii A.;
- Toshchakov, Stepan V.;
- Yakimov, Michail M.;
- Jones, David L.;
- Golyshin, Peter N.;
- Golyshina, Olga V.
Publication type:
Correction Notice
High Representation of Archaea Across All Depths in Oxic and Low-pH Sediment Layers Underlying an Acidic Stream.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.576520
By:
- Distaso, Marco A.;
- Bargiela, Rafael;
- Brailsford, Francesca L.;
- Williams, Gwion B.;
- Wright, Samuel;
- Lunev, Evgenii A.;
- Toshchakov, Stepan V.;
- Yakimov, Michail M.;
- Jones, David L.;
- Golyshin, Peter N.;
- Golyshina, Olga V.
Publication type:
Article
Hydrocarbon-Degrading Bacteria Alcanivorax and Marinobacter Associated With Microalgae Pavlova lutheri and Nannochloropsis oculata.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.572931
By:
- Chernikova, Tatyana N.;
- Bargiela, Rafael;
- Toshchakov, Stepan V.;
- Shivaraman, Vignesh;
- Lunev, Evgenii A.;
- Yakimov, Michail M.;
- Thomas, David N.;
- Golyshin, Peter N.
Publication type:
Article
Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data.
Published in:
Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01270
By:
- Bargiela, Rafael;
- Gertler, Christoph;
- Magagnini, Mirko;
- Mapelli, Francesca;
- Chen, Jianwei;
- Daffonchio, Daniele;
- Golyshin, Peter N.;
- Ferrer, Manuel;
- Chakraborty, Romy;
- Ladoukakis, Efthymios
Publication type:
Article
Diversity of "Ca. Micrarchaeota" in Two Distinct Types of Acidic Environments and Their Associations with Thermoplasmatales.
Published in:
Genes, 2019, v. 10, n. 6, p. 461, doi. 10.3390/genes10060461
By:
- Golyshina, Olga V.;
- Bargiela, Rafael;
- Toshchakov, Stepan V.;
- Chernyh, Nikolay A.;
- Ramayah, Soshila;
- Korzhenkov, Aleksei A.;
- Kublanov, Ilya V.;
- Golyshin, Peter N.
Publication type:
Article
Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia".
Published in:
Genes, 2018, v. 9, n. 2, p. 28, doi. 10.3390/genes9020028
By:
- Ferrer, Manuel;
- Sorokin, Dimitry Y.;
- Wolf, Yuri I.;
- Ciordia, Sergio;
- Mena, María C.;
- Bargiela, Rafael;
- Koonin, Eugene V.;
- Makarova, Kira S.
Publication type:
Article
Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data.
Published in:
Bioinformatics, 2015, v. 31, n. 11, p. 1771, doi. 10.1093/bioinformatics/btv036
By:
- Tobalina, Luis;
- Bargiela, Rafael;
- Pey, Jon;
- Herbst, Florian-Alexander;
- Lores, Iván;
- Rojo, David;
- Barbas, Coral;
- Peláez, Ana I.;
- Sánchez, Jesús;
- von Bergen, Martin;
- Seifert, Jana;
- Ferrer, Manuel;
- Planes, Francisco J.
Publication type:
Article
Functional microbiome deficits associated with ageing: Chronological age threshold.
Published in:
Aging Cell, 2020, v. 19, n. 1, p. N.PAG, doi. 10.1111/acel.13063
By:
- Ruiz‐Ruiz, Susana;
- Sanchez‐Carrillo, Sergio;
- Ciordia, Sergio;
- Mena, María C.;
- Méndez‐García, Celia;
- Rojo, David;
- Bargiela, Rafael;
- Zubeldia‐Varela, Elisa;
- Martínez‐Martínez, Mónica;
- Barbas, Coral;
- Ferrer, Manuel;
- Moya, Andrés
Publication type:
Article
Microbial Communities of Polymetallic Deposits' Acidic Ecosystems of Continental Climatic Zone With High Temperature Contrasts.
Published in:
Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01573
By:
- Gavrilov, Sergey N.;
- Korzhenkov, Aleksei A.;
- Kublanov, Ilya V.;
- Bargiela, Rafael;
- Zamana, Leonid V.;
- Popova, Alexandra A.;
- Toshchakov, Stepan V.;
- Golyshin, Peter N.;
- Golyshina, Olga V.
Publication type:
Article
Proteomic snapshot of saliva samples predicts new pathways implicated in SARS-CoV-2 pathogenesis.
Published in:
Clinical Proteomics, 2024, v. 21, n. 1, p. 1, doi. 10.1186/s12014-024-09482-9
By:
- Moreno, Elena;
- Ciordia, Sergio;
- Fátima, Santos Milhano;
- Jiménez, Daniel;
- Martínez-Sanz, Javier;
- Vizcarra, Pilar;
- Ron, Raquel;
- Sánchez-Conde, Matilde;
- Bargiela, Rafael;
- Sanchez-Carrillo, Sergio;
- Moreno, Santiago;
- Corrales, Fernando;
- Ferrer, Manuel;
- Serrano-Villar, Sergio
Publication type:
Article

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