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Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals speciesspecific metabolic shifts and variabilities during early life.
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- Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0290-6
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- Article
pH and thiosulfate dependent microbial sulfur oxidation strategies across diverse environments.
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- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1426584
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- Article
O<sub>2</sub> partitioning of sulfur oxidizing bacteria drives acidity and thiosulfate distributions in mining waters.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37426-8
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- Article
A widespread group of large plasmids in methanotrophic Methanoperedens archaea.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34588-9
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- Article
Experimental validation that human microbiome phages use alternative genetic coding.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32979-6
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- Article
Ion complexation waves emerge at the curved interfaces of layered minerals.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31004-0
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- Article
Insights into methionine S-methylation in diverse organisms.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30491-5
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- Article
Subsurface carbon monoxide oxidation capacity revealed through genome‐resolved metagenomics of a carboxydotroph.
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- Environmental Microbiology Reports, 2020, v. 12, n. 5, p. 525, doi. 10.1111/1758-2229.12868
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- Article
Correlative microscopy for phylogenetic and ultrastructural characterization of microbial communities.
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- Environmental Microbiology Reports, 2012, v. 4, n. 1, p. 36, doi. 10.1111/j.1758-2229.2011.00275.x
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- Article
The rise of diversity in metabolic platforms across the Candidate Phyla Radiation.
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- BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00804-5
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- Article
Atomic Structure, Defects, and Stacking of Clay Particles by Low-Dose, High Resolution (Cryo)-TEM.
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- Microscopy & Microanalysis, 2019, p. 1958, doi. 10.1017/S1431927618010279
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Atomic Structure, Defects, and Stacking of Clay Particles by Low-Dose, High Resolution (Cryo)-TEM.
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- 2018
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- Abstract
Investigating Processes of Nanocrystal Formation and Transformation via Liquid Cell TEM.
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- Microscopy & Microanalysis, 2014, v. 20, n. 2, p. 425, doi. 10.1017/S1431927614000294
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- Article
Tetraether-linked membrane monolayers inFerroplasmaspp: a key to survival in acid.
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- Extremophiles, 2004, v. 8, n. 5, p. 411, doi. 10.1007/s00792-004-0404-5
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- Article
Arsenic resistance in the archaeon "Ferroplasma acidarmanus": new insights into the structure and evolution of the ars genes.
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- Extremophiles, 2003, v. 7, n. 2, p. 123, doi. 10.1007/s00792-002-0303-6
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- Article
Genetic Exchange Across a Species Boundary in the Archaeal Genus Ferroplasma.
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- Genetics, 2007, v. 177, n. 1, p. 407, doi. 10.1534/genetics.107.072892
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- Article
Structure of the bacterial ribosome at 2 Å resolution.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.60482
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- Article
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.05477
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- Article
Electrodic voltages accompanying stimulated bioremediation of a uranium-contaminated aquifer.
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- Journal of Geophysical Research. Biogeosciences, 2010, v. 115, n. G2, p. n/a, doi. 10.1029/2009JG001142
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- Article
Galvanic interpretation of self-potential signals associated with microbial sulfate-reduction.
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- Journal of Geophysical Research. Biogeosciences, 2007, v. 112, n. G3, p. n/a, doi. 10.1029/2007JG000440
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- Article
X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10554, doi. 10.1093/nar/gks826
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- Article
A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.
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- Nucleic Acids Research, 2011, v. 39, n. 22, p. 9695, doi. 10.1093/nar/gkr692
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- Article
Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23553-7
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- Article
Structural coordination between active sites of a CRISPR reverse transcriptase-integrase complex.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22900-y
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- Article
Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22736-6
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- Article
Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data.
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- Nature Biotechnology, 2023, v. 41, n. 12, p. 1820, doi. 10.1038/s41587-023-01696-w
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inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains.
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- Nature Biotechnology, 2021, v. 39, n. 6, p. 727, doi. 10.1038/s41587-020-00797-0
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- Article
Measurement of bacterial replication rates in microbial communities.
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- Nature Biotechnology, 2016, v. 34, n. 12, p. 1256, doi. 10.1038/nbt.3704
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- Article
Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 12, p. 2697, doi. 10.1038/ismej.2015.66
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- Article
Aquifer environment selects for microbial species cohorts in sediment and groundwater.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 8, p. 1846, doi. 10.1038/ismej.2015.2
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- Article
Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 4, p. 1014, doi. 10.1038/ismej.2014.200
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- Article
Elevated temperature alters proteomic responses of individual organisms within a biofilm community.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 1, p. 180, doi. 10.1038/ismej.2014.113
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Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 7, p. 1452, doi. 10.1038/ismej.2013.249
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- Article
Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 5, p. 979, doi. 10.1038/ismej.2013.221
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- Article
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 4, p. 800, doi. 10.1038/ismej.2012.148
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Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 2, p. 338, doi. 10.1038/ismej.2012.103
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De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 1, p. 81, doi. 10.1038/ismej.2011.78
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- Article
Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 7, p. 1152, doi. 10.1038/ismej.2010.200
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- Article
Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 11, p. 1398, doi. 10.1038/ismej.2010.64
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AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 5, p. 599, doi. 10.1038/ismej.2009.158
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- Article
Cultivation and quantitative proteomic analyses of acidophilic microbial communities.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 4, p. 520, doi. 10.1038/ismej.2009.139
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- Article
Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 6, p. 738, doi. 10.1038/ismej.2009.16
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- Article
Natural acidophilic biofilm communities reflect distinct organismal and functional organization.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 2, p. 266, doi. 10.1038/ismej.2008.90
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- Article
Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 2, p. 159, doi. 10.1038/ismej.2008.99
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- Article
Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2008, v. 2, n. 8, p. 853, doi. 10.1038/ismej.2008.38
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- Article
Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2008, v. 2, n. 5, p. 542, doi. 10.1038/ismej.2008.17
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- Article
Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups.
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- BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01348-6
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- Article
Leaching and reconstruction at the surfaces of dissolving chain-silicate minerals.
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- Nature, 1993, v. 366, n. 6452, p. 253, doi. 10.1038/366253a0
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- Article
Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation.
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- Scientific Reports, 2017, p. 40101, doi. 10.1038/srep40101
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- Article
A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40835-4
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- Article