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Using Systems Practices.
- Published in:
- Science Scope, 2008, v. 31, n. 9, p. 16
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- Publication type:
- Article
Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions.
- Published in:
- BMC Systems Biology, 2015, v. 9, p. 1, doi. 10.1186/1752-0509-9-S2-S1
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- Publication type:
- Article
Evolution of context dependent regulation by expansion of feast/famine regulatory proteins.
- Published in:
- BMC Systems Biology, 2014, v. 8, n. 1, p. 122, doi. 10.1186/s12918-014-0122-2
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- Publication type:
- Article
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis.
- Published in:
- BMC Systems Biology, 2010, v. 4, p. 64, doi. 10.1186/1752-0509-4-64
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- Publication type:
- Article
The DNA-binding network of Mycobacterium tuberculosis.
- Published in:
- Nature Communications, 2015, v. 6, n. 1, p. 5829, doi. 10.1038/ncomms6829
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- Publication type:
- Article
Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage.
- Published in:
- Nature Communications, 2014, v. 5, n. 11, p. 5603, doi. 10.1038/ncomms6603
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- Publication type:
- Article
Adaptive Prediction Emerges Over Short Evolutionary Time Scales.
- Published in:
- Genome Biology & Evolution, 2017, v. 9, n. 6, p. 1616, doi. 10.1093/gbe/evx116
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- Publication type:
- Article
Low-pass sequencing for microbial comparative genomics.
- Published in:
- BMC Genomics, 2004, v. 5, p. 3, doi. 10.1186/1471-2164-5-3
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- Publication type:
- Article
Integration and visualization of systems biologydata in context of the genome.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 382, doi. 10.1186/1471-2105-11-382
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- Publication type:
- Article
Corrigendum: Peroxiredoxins are conserved markers of circadian rhythms.
- Published in:
- 2012
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- Publication type:
- Erratum
Peroxiredoxins are conserved markers of circadian rhythms.
- Published in:
- Nature, 2012, v. 485, n. 7399, p. 459, doi. 10.1038/nature11088
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- Publication type:
- Article
An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation.
- Published in:
- Molecular Microbiology, 2014, v. 92, n. 2, p. 369, doi. 10.1111/mmi.12564
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- Publication type:
- Article
INTEGRATING OCEANOGRAPHIC RESEARCH INTO HIGH SCHOOL CURRICULA: Achieving Broader Impacts Through Systems Education Experiences Modules.
- Published in:
- Oceanography, 2020, v. 33, n. 3, p. 16, doi. 10.5670/oceanog.2020.304
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- Publication type:
- Article
A single-cell based precision medicine approach using glioblastoma patient-specific models.
- Published in:
- NPJ Precision Oncology, 2022, v. 6, n. 1, p. 1, doi. 10.1038/s41698-022-00294-4
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- Publication type:
- Article
Genetic program activity delineates risk, relapse, and therapy responsiveness in multiple myeloma.
- Published in:
- NPJ Precision Oncology, 2021, v. 5, n. 1, p. 1, doi. 10.1038/s41698-021-00185-0
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- Publication type:
- Article
A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS.
- Published in:
- Scientific Data, 2020, v. 7, n. 1, p. N.PAG, doi. 10.1038/s41597-020-00724-7
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- Publication type:
- Article
Architecture for interoperable software in biology.
- Published in:
- Briefings in Bioinformatics, 2014, v. 15, n. 4, p. 626, doi. 10.1093/bib/bbs074
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- Publication type:
- Article
Ocean acidification conditions increase resilience of marine diatoms.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-04742-3
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- Publication type:
- Article
The Firegoose: two-way integration of diverse data from differentbioinformatics web resources with desktop applications.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 456, doi. 10.1186/1471-2105-8-456
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- Publication type:
- Article
The Gaggle: An open-source software system for integrating bioinformatics software and data sources.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 176, doi. 10.1186/1471-2105-7-176
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- Publication type:
- Article
Metallochaperones Regulate Intracellular Copper Levels.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002880
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- Publication type:
- Article
Consequential insights for advancing informal STEM learning and outcomes for students from historically marginalized communities.
- Published in:
- Humanities & Social Sciences Communications, 2024, v. 11, n. 1, p. 1, doi. 10.1057/s41599-024-02797-w
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- Publication type:
- Article
Systems biology approaches towards predictive microbial ecology.
- Published in:
- Environmental Microbiology, 2018, v. 20, n. 12, p. 4197, doi. 10.1111/1462-2920.14378
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- Publication type:
- Article
Robustness of a model microbial community emerges from population structure among single cells of a clonal population.
- Published in:
- Environmental Microbiology, 2017, v. 19, n. 8, p. 3059, doi. 10.1111/1462-2920.13764
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- Publication type:
- Article
Contrasting heat stress response patterns of coral holobionts across the Red Sea suggest distinct mechanisms of thermal tolerance.
- Published in:
- Molecular Ecology, 2021, v. 30, n. 18, p. 4466, doi. 10.1111/mec.16064
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- Publication type:
- Article
The universe under a microscope.
- Published in:
- 2015
- By:
- Publication type:
- Other
Inference of Expanded Lrp-Like Feast/Famine Transcription Factor Targets in a Non-Model Organism Using Protein Structure-Based Prediction.
- Published in:
- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107863
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- Publication type:
- Article
Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life.
- Published in:
- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107680
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- Publication type:
- Article
A Role for Programmed Cell Death in the Microbial Loop
- Published in:
- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062595
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- Publication type:
- Article
Diurnally Entrained Anticipatory Behavior in Archaea.
- Published in:
- PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005485
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- Publication type:
- Article
Diatom acclimation to elevated CO<sub>2</sub> via cAMP signalling and coordinated gene expression.
- Published in:
- Nature Climate Change, 2015, v. 5, n. 8, p. 761, doi. 10.1038/nclimate2683
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- Publication type:
- Article
Autophagy as a Mechanism for Adaptive Prediction-Mediated Emergence of Drug Resistance.
- Published in:
- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.712631
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- Publication type:
- Article
Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology.
- Published in:
- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.642422
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- Publication type:
- Article
Harnessing the power of human tumor-derived cell lines for the rational design of cancer therapies.
- Published in:
- Pigment Cell & Melanoma Research, 2012, v. 25, n. 4, p. 406, doi. 10.1111/j.1755-148X.2012.01020.x
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- Publication type:
- Article
Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics.
- Published in:
- PLoS ONE, 2021, v. 16, n. 2, p. 1, doi. 10.1371/journal.pone.0247534
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- Publication type:
- Article
Visualization of omics data for systems biology.
- Published in:
- Nature Methods, 2010, v. 7, n. 3s, p. S56, doi. 10.1038/nmeth.1436
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- Publication type:
- Article
A comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS.
- Published in:
- Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02590-5
- By:
- Publication type:
- Article
The BCGΔBCG1419c Vaccine Candidate Reduces Lung Pathology, IL-6, TNF-α, and IL-10 During Chronic TB Infection.
- Published in:
- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01281
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- Publication type:
- Article
A systems-level gene regulatory network model for Plasmodium falciparum.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 9, p. 4891, doi. 10.1093/nar/gkaa1245
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- Publication type:
- Article
A genome wide dosage suppressor network reveals genomic robustness.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 1, p. 255, doi. 10.1093/nar/gkw1148
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- Publication type:
- Article
cMonkey<sub>2</sub>: Automated, systematic, integrated detection of co-regulated gene modules for any organism.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 13, p. 1, doi. 10.1093/nar/gkv300
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- Publication type:
- Article
Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 21, p. 12973, doi. 10.1093/nar/gku1031
- By:
- Publication type:
- Article
A high-resolution network model for global gene regulation in Mycobacterium tuberculosis.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 18, p. 11291, doi. 10.1093/nar/gku777
- By:
- Publication type:
- Article
Molecular mechanisms of system responses to novel stimuli are predictable from public data.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 3, p. 1442, doi. 10.1093/nar/gkt938
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- Publication type:
- Article
Network portal: a database for storage, analysis and visualization of biological networks.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D184, doi. 10.1093/nar/gkt1190
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- Publication type:
- Article
Global analysis of mRNA stability in Mycobacterium tuberculosis.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 1, p. 509, doi. 10.1093/nar/gks1019
- By:
- Publication type:
- Article
miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W125, doi. 10.1093/nar/gkr374
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- Publication type:
- Article
Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 7, p. 2519, doi. 10.1093/nar/gkq1211
- By:
- Publication type:
- Article
History and Future Perspectives on the Discipline of Quantitative Systems Pharmacology Modeling and Its Applications.
- Published in:
- Frontiers in Physiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fphys.2021.637999
- By:
- Publication type:
- Article
Model-based deconvolution of genome-wide DNA binding.
- Published in:
- Bioinformatics, 2008, v. 24, n. 3, p. 396, doi. 10.1093/bioinformatics/btm592
- By:
- Publication type:
- Article