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MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.
- Published in:
- Bioinformatics, 2005, v. 21, n. 16, p. 3352
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- Publication type:
- Article
SECISDesign: a server to design SECIS-elements within the coding sequence.
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- Bioinformatics, 2005, v. 21, n. 15, p. 3312, doi. 10.1093/bioinformatics/bti507
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- Publication type:
- Article
A multiple-feature framework for modelling and predicting transcription factor binding sites.
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- Bioinformatics, 2005, v. 21, n. 14, p. 3082, doi. 10.1093/bioinformatics/bti477
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- Publication type:
- Article
Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets.
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- Bioinformatics, 1999, v. 15, n. 3, p. 234, doi. 10.1093/bioinformatics/15.3.234
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- Publication type:
- Article
GRIN3B missense mutation as an inherited risk factor for schizophrenia: whole-exome sequencing in a family with a familiar history of psychotic disorders.
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- Genetics Research, 2017, v. 99, p. N.PAG, doi. 10.1017/S0016672316000148
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- Publication type:
- Article
Efficient Prediction of Alternative Splice Forms Using Protein Domain Homology.
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- In Silico Biology, 2004, v. 4, n. 2, p. 195
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- Publication type:
- Article
Protein Similarity Search under mRNA Structural Constraints: Application to Targeted Selenocysteine Insertion.
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- In Silico Biology, 2002, v. 2, n. 3, p. 275
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- Publication type:
- Article
Distinct SARS-CoV-2 RNA fragments activate Toll-like receptors 7 and 8 and induce cytokine release from human macrophages and microglia.
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- Frontiers in Immunology, 2023, v. 13, p. 1, doi. 10.3389/fimmu.2022.1066456
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- Publication type:
- Article
Tyrosine kinase inhibitors can activate the NLRP3 inflammasome in myeloid cells through lysosomal damage and cell lysis.
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- Science Signaling, 2023, v. 16, n. 768, p. 1, doi. 10.1126/scisignal.abh1083
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- Publication type:
- Article
Microstructure alignment of wood density profiles: an approach to equalize radial differences in growth rate.
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- Trees: Structure & Function, 2012, v. 26, n. 4, p. 1267, doi. 10.1007/s00468-012-0702-y
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- Publication type:
- Article
Cluster based prediction of PDZ-peptide interactions.
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- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S1-S5
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- Publication type:
- Article
EBF1 binds to EBNA2 and promotes the assembly of EBNA2 chromatin complexes in B cells.
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- PLoS Pathogens, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.ppat.1006664
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- Publication type:
- Article
Interrogating two extensively self-targeting Type I CRISPR-Cas systems in Xanthomonas albilineans reveals distinct anti-CRISPR proteins that block DNA degradation.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 2, p. 769, doi. 10.1093/nar/gkad1097
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- Publication type:
- Article
Improved discovery of RNA-binding protein binding sites in eCLIP data using DEWSeq.
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- Nucleic Acids Research, 2024, v. 52, n. 1, p. e1, doi. 10.1093/nar/gkad998
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- Publication type:
- Article
The RNA-binding protein ARPP21 controls dendritic branching by functionally opposing the miRNA it hosts.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03681-3
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- Publication type:
- Article
uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03575-4
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- Publication type:
- Article
RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway.
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- Nature Communications, 2015, v. 6, n. 7, p. 7367, doi. 10.1038/ncomms8367
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- Publication type:
- Article
Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease.
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- Nature Communications, 2014, v. 5, n. 10, p. 5288, doi. 10.1038/ncomms6288
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- Publication type:
- Article
Requirements for a successful defence reaction by the CRISPR-Cas subtype I-B system.
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- Biochemical Society Transactions, 2013, v. 41, n. 6, p. 1444, doi. 10.1042/BST20130098
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- Publication type:
- Article
Regulatory RNAs in archaea: first target identification in Methanoarchaea.
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- Biochemical Society Transactions, 2013, v. 41, n. 1, p. 344, doi. 10.1042/BST20120280
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- Publication type:
- Article
Meta-Analysis of Mechano-Sensitive Ion Channels in Human Hearts: Chamber- and Disease-Preferential mRNA Expression.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 13, p. 10961, doi. 10.3390/ijms241310961
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- Publication type:
- Article
CopomuS—Ranking Compensatory Mutations to Guide RNA-RNA Interaction Verification Experiments.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 11, p. 3852, doi. 10.3390/ijms21113852
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- Publication type:
- Article
Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-159
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- Publication type:
- Article
antaRNA - Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0815-6
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- Publication type:
- Article
ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/s12859-014-0404-0
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- Publication type:
- Article
TassDB2 - A comprehensive database of subtle alternative splicing events.
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- BMC Bioinformatics, 2010, v. 11, p. 216, doi. 10.1186/1471-2105-11-216
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- Publication type:
- Article
FOXG1 Regulates PRKAR2B Transcriptionally and Posttranscriptionally via miR200 in the Adult Hippocampus.
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- Molecular Neurobiology, 2019, v. 56, n. 7, p. 5188, doi. 10.1007/s12035-018-1444-7
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- Publication type:
- Article
Unraveling the small proteome of the plant symbiont Sinorhizobium meliloti by ribosome profiling and proteogenomics.
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- MicroLife, 2023, v. 4, p. 1, doi. 10.1093/femsml/uqad012
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- Publication type:
- Article
Revealing the small proteome of Haloferax volcanii by combining ribosome profiling and small-protein optimized mass spectrometry.
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- MicroLife, 2023, v. 4, p. 1, doi. 10.1093/femsml/uqad001
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- Publication type:
- Article
A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence.
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- MicroLife, 2020, v. 1, n. 1, p. 1, doi. 10.1093/femsml/uqaa002
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- Publication type:
- Article
Plasticity of archaeal C/D box sRNA biogenesis.
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- Molecular Microbiology, 2017, v. 103, n. 1, p. 151, doi. 10.1111/mmi.13549
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- Publication type:
- Article
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal.
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- Molecular Microbiology, 2011, v. 80, n. 4, p. 868, doi. 10.1111/j.1365-2958.2011.07620.x
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- Publication type:
- Article
Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity.
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- Nature Genetics, 2004, v. 36, n. 12, p. 1255, doi. 10.1038/ng1469
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- Publication type:
- Article
Differentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq - ryhB encodes the regulatory RNA RyhB and a peptide, RyhP.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3586-9
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- Publication type:
- Article
SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification.
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- BMC Bioinformatics, 2016, v. 17, p. 73, doi. 10.1186/s12859-016-1345-6
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- Publication type:
- Article
Pre-mRNA Secondary Structures Influence Exon Recognition.
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- PLoS Genetics, 2007, v. 3, n. 11, p. e204, doi. 10.1371/journal.pgen.0030204
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- Publication type:
- Article
Alternative Splicing at NAGNAG Acceptors: Simply Noise or Noise and More?
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- 2006
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- Publication type:
- Letter
IntaRNAhelix-composing RNA–RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 5, p. N.PAG, doi. 10.1142/S0219720019400092
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- Publication type:
- Article
LOCAL SEQUENCE-STRUCTURE MOTIFS IN RNA.
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- Journal of Bioinformatics & Computational Biology, 2004, v. 2, n. 4, p. 681, doi. 10.1142/S0219720004000818
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- Publication type:
- Article
Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins.
- Published in:
- Cell & Tissue Research, 2014, v. 356, n. 3, p. 507, doi. 10.1007/s00441-014-1885-x
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- Publication type:
- Article
RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab549
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- Publication type:
- Article
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02762-z
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- Publication type:
- Article
GraphDDP: a graph-embedding approach to detect differentiation pathways in single-cell-data using prior class knowledge.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05988-7
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- Publication type:
- Article
Sequencing errors or SNPs at splice-acceptor guanines in dbSNP?
- Published in:
- 2006
- By:
- Publication type:
- Letter
Improving CLIP-seq data analysis by incorporating transcript information.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-07297-0
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- Publication type:
- Article
CPSP-tools -- Exact and complete algorithms for high-throughput 3D lattice protein studies.
- Published in:
- 2008
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- Publication type:
- Product Review
Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering.
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- PLoS Computational Biology, 2007, v. 3, n. 4, p. e65, doi. 10.1371/journal.pcbi.0030065
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- Publication type:
- Article
Partial RNA design.
- Published in:
- Bioinformatics, 2024, v. 40, p. i437, doi. 10.1093/bioinformatics/btae222
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- Publication type:
- Article
RNA interaction format: a general data format for RNA interactions.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad665
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- Publication type:
- Article
CRISPRtracrRNA: robust approach for CRISPR tracrRNA detection.
- Published in:
- Bioinformatics, 2022, v. 38, p. ii42, doi. 10.1093/bioinformatics/btac466
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- Publication type:
- Article