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The Evolutionary Origin of Xanthomonadales Genomes and the Nature of the Horizontal Gene Transfer Process.
- Published in:
- Molecular Biology & Evolution, 2006, v. 23, n. 11, p. 2049, doi. 10.1093/molbev/msl075
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- Article
Effects of choice of DNA sequence model structure on gene identification accuracy.
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- Bioinformatics, 2004, v. 20, n. 7, p. 993, doi. 10.1093/bioinformatics/bth028
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- Article
Inhaled diesel exhaust particles result in microbiome-related systemic inflammation and altered cardiovascular disease biomarkers in C57Bl/6 male mice.
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- Particle & Fibre Toxicology, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12989-022-00452-3
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- Article
Silicon versus Superbug: Assessing Machine Learning's Role in the Fight against Antimicrobial Resistance.
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- Antibiotics (2079-6382), 2023, v. 12, n. 11, p. 1604, doi. 10.3390/antibiotics12111604
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- Article
Phytochrome B regulates reactive oxygen signaling during abiotic and biotic stress in plants.
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- New Phytologist, 2023, v. 237, n. 5, p. 1711, doi. 10.1111/nph.18626
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- Article
The impact of multifactorial stress combination on plant growth and survival.
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- New Phytologist, 2021, v. 230, n. 3, p. 1034, doi. 10.1111/nph.17232
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- Article
Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering.
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- Frontiers in Microbiology, 2016, p. 25, doi. 10.3389/fmicb.2016.01210
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- Article
Detecting Evolutionary Strata on the Human X Chromosome in the Absence of Gametologous Y-Linked Sequences.
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- Genome Biology & Evolution, 2013, v. 5, n. 10, p. 1863, doi. 10.1093/gbe/evt139
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- Article
Analysis of transcribed sequences from young and mature zebrafish thrombocytes.
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- PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0264776
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- Article
Analysis of multipartite bacterial genomes using alignment free and alignment-based pipelines.
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- Archives of Microbiology, 2023, v. 205, n. 1, p. 1, doi. 10.1007/s00203-022-03354-2
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- Article
Discovery of mosaic genomic islands in Pseudomonas spp.
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- Archives of Microbiology, 2021, v. 203, n. 5, p. 2735, doi. 10.1007/s00203-021-02253-2
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- Article
POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling.
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- Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00476-y
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- Article
Glucose Induces Sensitivity to Oxygen Deprivation and Modulates Insulin/IGF-1 Signaling and Lipid Biosynthesis in Caenorhabditis elegans.
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- Genetics, 2015, v. 200, n. 1, p. 167, doi. 10.1534/genetics.115.174631
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- Article
The OsTIL1 lipocalin protects cell membranes from reactive oxygen species damage and maintains the 18:3‐containing glycerolipid biosynthesis under cold stress in rice.
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- Plant Journal, 2024, v. 117, n. 1, p. 72, doi. 10.1111/tpj.16470
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- Article
Expression of a dominant‐negative AtNEET‐H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis.
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- Plant Journal, 2020, v. 101, n. 5, p. 1152, doi. 10.1111/tpj.14581
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- Article
Identification and characterization of a core set of ROS wave‐associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light.
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- Plant Journal, 2019, v. 98, n. 1, p. 126, doi. 10.1111/tpj.14205
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- Article
IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 10, p. 3273, doi. 10.1534/g3.119.400562
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- Article
Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans.
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 10, p. 3149, doi. 10.1534/g3.116.031583
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- Article
Identification of Novel Antimicrobial Resistance Genes Using Machine Learning, Homology Modeling, and Molecular Docking.
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- Micromachines, 2022, v. 13, n. 11, p. 2102, doi. 10.3390/microorganisms10112102
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- Article
Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2452-5
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- Article
machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics in bacterial strains.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab179
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- Article
SSG-LUGIA: Single Sequence based Genome Level Unsupervised Genomic Island Prediction Algorithm.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab116
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Metabolomics technology and bioinformatics for precision medicine.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1957, doi. 10.1093/bib/bbx170
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- Article
Probabilistic methods of identifying genes in prokaryotic genomes: Connections to the HMM theory.
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- Briefings in Bioinformatics, 2004, v. 5, n. 2, p. 118, doi. 10.1093/bib/5.2.118
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- Article
Tissue-specific differences in metabolites and transcripts contribute to the heterogeneity of ricinoleic acid accumulation in Ricinus communis L. (castor) seeds.
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- Metabolomics, 2019, v. 15, n. 1, p. 1, doi. 10.1007/s11306-018-1464-3
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- Article
Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection.
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- PLoS Computational Biology, 2005, v. 1, n. 6, p. 461, doi. 10.1371/journal.pcbi.0010056
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- Article
Age-group-targeted testing for COVID-19 as a new prevention strategy.
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- Nonlinear Dynamics, 2020, v. 101, n. 3, p. 1921, doi. 10.1007/s11071-020-05879-x
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- Article
Higher-order Markov models for metagenomic sequence classification.
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- Bioinformatics, 2020, v. 36, n. 14, p. 4130, doi. 10.1093/bioinformatics/btaa562
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- Article
Benchmarking RNA-Seq Aligners at Base-Level and Junction Base-Level Resolution Using the Arabidopsis thaliana Genome.
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- Plants (2223-7747), 2024, v. 13, n. 5, p. 582, doi. 10.3390/plants13050582
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- Article
Environmental vibrios represent a source of antagonistic compounds that inhibit pathogenic Vibrio cholerae and Vibrio parahaemolyticus strains.
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- MicrobiologyOpen, 2017, v. 6, n. 5, p. n/a, doi. 10.1002/mbo3.504
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Using complementary approaches to identify trans-domain nuclear gene transfers in the extremophile Galdieria sulphuraria (Rhodophyta).
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- Journal of Phycology, 2017, v. 53, n. 1, p. 7, doi. 10.1111/jpy.12466
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- Article
Generalization of Entropy Based Divergence Measures for Symbolic Sequence Analysis.
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- PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0093532
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The Arabidopsis gene co‐expression network.
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- Plant Direct, 2022, v. 6, n. 4, p. 1, doi. 10.1002/pld3.396
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- Article
Lipophilic signals lead to organ‐specific gene expression changes in Arabidopsis seedlings.
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- Plant Direct, 2020, v. 4, n. 7, p. 1, doi. 10.1002/pld3.242
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- Article
Deciphering Microbial Shifts in the Gut and Lung Microbiomes of COVID-19 Patients.
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- Microorganisms, 2024, v. 12, n. 6, p. 1058, doi. 10.3390/microorganisms12061058
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- Article
Using Machine Learning to Predict Genes Underlying Differentiation of Multipartite and Unipartite Traits in Bacteria.
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- Microorganisms, 2023, v. 11, n. 11, p. 2756, doi. 10.3390/microorganisms11112756
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- Article
Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data.
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- Microorganisms, 2023, v. 11, n. 10, p. 2478, doi. 10.3390/microorganisms11102478
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- Article
Identification of Novel Antimicrobial Resistance Genes Using Machine Learning, Homology Modeling, and Molecular Docking.
- Published in:
- Microorganisms, 2022, v. 10, n. 11, p. 2102, doi. 10.3390/microorganisms10112102
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- Publication type:
- Article
Phylogenetic analysis of eukaryotic NEET proteins uncovers a link between a key gene duplication event and the evolution of vertebrates.
- Published in:
- Scientific Reports, 2017, p. 42571, doi. 10.1038/srep42571
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- Article
Interpreting genomic data via entropic dissection.
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- Nucleic Acids Research, 2013, v. 41, n. 1, p. e23, doi. 10.1093/nar/gks917
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- Article
Towards more robust methods of alien gene detection.
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- Nucleic Acids Research, 2011, v. 39, n. 9, p. e56, doi. 10.1093/nar/gkr059
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- Article
Interactions between mitoNEET and NAF-1 in cells.
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- PLoS ONE, 2017, v. 12, n. 4, p. 1, doi. 10.1371/journal.pone.0175796
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- Article
CancerNet: a unified deep learning network for pan-cancer diagnostics.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04783-y
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- Article
The impact of water deficit and heat stress combination on the molecular response, physiology, and seed production of soybean.
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- Physiologia Plantarum, 2021, v. 172, n. 1, p. 41, doi. 10.1111/ppl.13269
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- Article
Molecular signatures in the progression of COVID-19 severity.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-26657-2
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- Article
Detection of genomic islands via segmental genome heterogeneity.
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- Nucleic Acids Research, 2009, v. 37, n. 16, p. 5255, doi. 10.1093/nar/gkp576
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- Article
Detecting laterally transferred genes: use of entropic clustering methods and genome position.
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- Nucleic Acids Research, 2007, v. 35, n. 14, p. 4629, doi. 10.1093/nar/gkm204
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- Article
The evolution of reactive oxygen species metabolism.
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- Journal of Experimental Botany, 2016, v. 67, n. 21, p. 5933, doi. 10.1093/jxb/erw382
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- Article
L-Asparaginase-Induced Reversible Posterior Leukoencephalopathy Syndrome in a Child with Acute Lymphoblastic Leukemia.
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- Pediatric Neurosurgery, 2002, v. 37, n. 4, p. 203, doi. 10.1159/000065395
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- Article
Identification and Network-Enabled Characterization of Auxin Response Factor Genes in Medicago truncatula.
- Published in:
- Frontiers in Plant Science, 2016, v. 7, p. 1, doi. 10.3389/fpls.2016.01857
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- Article