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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpeaenriched microbiome characterised by lactic acid formation and utilisation.
Published in:
Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0201-2
By:
- Kamke, Janine;
- Kittelmann, Sandra;
- Soni, Priya;
- Yang Li;
- Tavendale, Michael;
- Ganesh, Siva;
- Janssen, Peter H.;
- Weibing Shi;
- Froula, Jeff;
- Rubin, Edward M.;
- Attwood, Graeme T.
Publication type:
Article
Genomic insights into the physiology of Quinella, an iconic uncultured rumen bacterium.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34013-1
By:
- Kumar, Sandeep;
- Altermann, Eric;
- Leahy, Sinead C.;
- Jauregui, Ruy;
- Jonker, Arjan;
- Henderson, Gemma;
- Kittelmann, Sandra;
- Attwood, Graeme T.;
- Kamke, Janine;
- Waters, Sinéad M.;
- Patchett, Mark L.;
- Janssen, Peter H.
Publication type:
Article
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.
Published in:
Nature Biotechnology, 2018, v. 36, n. 4, p. 359, doi. 10.1038/nbt.4110
By:
- Seshadri, Rekha;
- Leahy, Sinead C;
- Attwood, Graeme T;
- Teh, Koon Hoong;
- Lambie, Suzanne C;
- Cookson, Adrian L;
- Eloe-Fadrosh, Emiley A;
- Pavlopoulos, Georgios A;
- Hadjithomas, Michalis;
- Varghese, Neha J;
- Paez-Espino, David;
- Perry, Rechelle;
- Henderson, Gemma;
- Creevey, Christopher J;
- Terrapon, Nicolas;
- Lapebie, Pascal;
- Drula, Elodie;
- Lombard, Vincent;
- Rubin, Edward;
- Kyrpides, Nikos C
Publication type:
Article
The complete genome sequence of the rumen methanogen Methanosarcina barkeri CM1.
Published in:
Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0038-5
By:
- Lambie, Suzanne C.;
- Kelly, William J.;
- Leahy, Sinead C.;
- Dong Li;
- Reilly, Kerri;
- McAllister, Tim A.;
- Valle, Edith R.;
- Attwood, Graeme T.;
- Altermann, Eric
Publication type:
Article
Soil Nitrogen Treatment Alters Microbiome Networks Across Farm Niches.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2021.786156
By:
- Wang, XinYue;
- Reilly, Kerri;
- Heathcott, Rosemary;
- Biswas, Ambarish;
- Johnson, Linda J.;
- Teasdale, Suliana;
- Grelet, Gwen-Aëlle;
- Podolyan, Anastasija;
- Gregorini, Pablo;
- Attwood, Graeme T.;
- Palevich, Nikola;
- Morales, Sergio E.
Publication type:
Article
The Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316<sup>T</sup> Highlights Adaptation to a Polysaccharide-Rich Environment.
Published in:
PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0011942
By:
- Kelly, William J.;
- Leahy, Sinead C.;
- Altermann, Eric;
- Yeoman, Carl J.;
- Dunne, Jonathan C.;
- Kong, Zhanhao;
- Pacheco, Diana M.;
- Li, Dong;
- Noel, Samantha J.;
- Moon, Christina D.;
- Cookson, Adrian L.;
- Attwood, Graeme T.
Publication type:
Article
The Genome Sequence of the Rumen Methanogen Methanobrevibacter ruminantium Reveals New Possibilities for Controlling Ruminant Methane Emissions.
Published in:
PLoS ONE, 2010, v. 5, n. 1, p. 1, doi. 10.1371/journal.pone.0008926
By:
- Leahy, Sinead C.;
- Kelly, William J.;
- Altermann, Eric;
- Ronimus, Ron S.;
- Yeoman, Carl J.;
- Pacheco, Diana M.;
- Dong Li;
- Zhanhao Kong;
- McTavish, Sharla;
- Sang, Carrie;
- Lambie, Suzanne C.;
- Janssen, Peter H.;
- Dey, Debjit;
- Attwood, Graeme T.
Publication type:
Article
Structure and function of an acetyl xylan esterase (Est2A) from the rumen bacterium Butyrivibrio proteoclasticus.
Published in:
Proteins, 2013, v. 81, n. 5, p. 911, doi. 10.1002/prot.24254
By:
- Till, Marisa;
- Goldstone, David C.;
- Attwood, Graeme T.;
- Moon, Christina D.;
- Kelly, Willam J.;
- Arcus, Vickery L.
Publication type:
Article
Structural and functional characterization of a promiscuous feruloyl esterase (Est1E) from the rumen bacterium Butyrivibrio proteoclasticus.
Published in:
Proteins, 2010, v. 78, n. 6, p. 1457, doi. 10.1002/prot.22662
By:
- Goldstone, David C.;
- Villas-Bôas, Silas G.;
- Till, Marisa;
- Kelly, William J.;
- Attwood, Graeme T.;
- Arcus, Vickery L.
Publication type:
Article
The Cytosolic Oligosaccharide-Degrading Proteome of Butyrivibrio Proteoclasticus.
Published in:
Proteomes, 2015, v. 3, n. 4, p. 347, doi. 10.3390/proteomes3040347
By:
- Dunne, Jonathan C.;
- Kelly, William J.;
- Leahy, Sinead C.;
- Li, Dong;
- Bond, Judy J.;
- Peng, Lifeng;
- Attwood, Graeme T.;
- Jordan, T. William
Publication type:
Article
An adhesin from hydrogen-utilizing rumen methanogen M ethanobrevibacter ruminantium M1 binds a broad range of hydrogen-producing microorganisms.
Published in:
Environmental Microbiology, 2016, v. 18, n. 9, p. 3010, doi. 10.1111/1462-2920.13155
By:
- Ng, Filomena;
- Kittelmann, Sandra;
- Patchett, Mark L.;
- Attwood, Graeme T.;
- Janssen, Peter H.;
- Rakonjac, Jasna;
- Gagic, Dragana
Publication type:
Article
Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions.
Published in:
Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03167-0
By:
- Xie, Fei;
- Zhao, Shengwei;
- Zhan, Xiaoxiu;
- Zhou, Yang;
- Li, Yin;
- Zhu, Weiyun;
- Pope, Phillip B.;
- Attwood, Graeme T.;
- Jin, Wei;
- Mao, Shengyong
Publication type:
Article
Complete Genome Sequence of the Polysaccharide-Degrading Rumen Bacterium Pseudobutyrivibrio xylanivorans MA3014 Reveals an Incomplete Glycolytic Pathway.
Published in:
Genome Biology & Evolution, 2020, v. 12, n. 9, p. 1566, doi. 10.1093/gbe/evaa165
By:
- Palevich, Nikola;
- Maclean, Paul H;
- Kelly, William J;
- Leahy, Sinead C;
- Rakonjac, Jasna;
- Attwood, Graeme T
Publication type:
Article
The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003.
Published in:
Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0285-8
By:
- Palevich, Nikola;
- Kelly, William J.;
- Leahy, Sinead C.;
- Altermann, Eric;
- Rakonjac, Jasna;
- Attwood, Graeme T.
Publication type:
Article
The complete genome sequence of the methanogenic archaeon ISO4-H5 provides insights into the methylotrophic lifestyle of a ruminal representative of the Methanomassiliicoccales.
Published in:
Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0183-5
By:
- Yang Li;
- Leahy, Sinead C.;
- Jeyanathan, Jeyamalar;
- Henderson, Gemma;
- Cox, Faith;
- Altermann, Eric;
- Kelly, William J.;
- Lambie, Suzanne C.;
- Janssen, Peter H.;
- Rakonjac, Jasna;
- Attwood, Graeme T.
Publication type:
Article
The complete genome sequence of the rumen methanogen Methanobrevibacter millerae SM9.
Published in:
Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0171-9
By:
- Kelly, William J.;
- Pacheco, Diana M.;
- Dong Li;
- Attwood, Graeme T.;
- Altermann, Eric;
- Leahy, Sinead C.
Publication type:
Article
Improving the genetic representation of rare taxa within complex microbial communities using DNA normalization methods.
Published in:
Molecular Ecology Resources, 2015, v. 15, n. 3, p. 464, doi. 10.1111/1755-0998.12321
By:
- Gagic, Dragana;
- Maclean, Paul H.;
- Li, Dong;
- Attwood, Graeme T.;
- Moon, Christina D.
Publication type:
Article
Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep.
Published in:
BMC Research Notes, 2017, v. 10, p. 1, doi. 10.1186/s13104-017-2671-0
By:
- Kamke, Janine;
- Soni, Priya;
- Yang Li;
- Ganesh, Siva;
- Kelly, William J.;
- Leahy, Sinead C.;
- Weibing Shi;
- Froula, Jeff;
- Rubin, Edward M.;
- Attwood, Graeme T.
Publication type:
Article
Crystal Structures of Bacterial Pectin Methylesterases Pme8A and PmeC2 from Rumen Butyrivibrio.
Published in:
International Journal of Molecular Sciences, 2023, v. 24, n. 18, p. 13738, doi. 10.3390/ijms241813738
By:
- Carbone, Vincenzo;
- Reilly, Kerri;
- Sang, Carrie;
- Schofield, Linley R.;
- Ronimus, Ron S.;
- Kelly, William J.;
- Attwood, Graeme T.;
- Palevich, Nikola
Publication type:
Article
Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-356
By:
- Ciric, Milica;
- Moon, Christina D.;
- Leahy, Sinead C.;
- Creevey, Christopher J.;
- Altermann, Eric;
- Attwood, Graeme T.;
- Rakonjac, Jasna;
- Gagic, Dragana
Publication type:
Article
Seasonal changes in the digesta-adherent rumen bacterial communities of dairy cattle grazing pasture.
Published in:
PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0173819
By:
- Noel, Samantha J.;
- Attwood, Graeme T.;
- Rakonjac, Jasna;
- Moon, Christina D.;
- Waghorn, Garry C.;
- Janssen, Peter H.
Publication type:
Article

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