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High-throughput protein characterization by complementation using DNA barcoded fragment libraries.
- Published in:
- Molecular Systems Biology, 2024, v. 20, n. 11, p. 1207, doi. 10.1038/s44320-024-00068-z
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- Article
Geochemical constraints on bacteriophage infectivity in terrestrial environments.
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- ISME Communications, 2023, p. 1, doi. 10.1038/s43705-023-00297-7
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- Article
Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface.
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- Environmental Microbiome, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s40793-024-00570-9
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- Article
Sustained Ability of a Natural Microbial Community to Remove Nitrate from Groundwater.
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- Ground Water, 2022, v. 60, n. 1, p. 99, doi. 10.1111/gwat.13132
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- Article
Improved Method for Estimating Reaction Rates During Push‐Pull Tests.
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- Ground Water, 2019, v. 57, n. 2, p. 292, doi. 10.1111/gwat.12770
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- Article
Microbial biomanufacturing for space-exploration—what to take and when to make.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37910-1
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- Article
Quantifying the local adaptive landscape of a nascent bacterial community.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-022-35677-5
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- Article
The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.
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- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1615-y
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- Article
Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.
- Published in:
- 2019
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- Correction Notice
The Bacillus subtilis sin Operon: An Evolvable Network Motif.
- Published in:
- Genetics, 2005, v. 169, n. 3, p. 1187, doi. 10.1534/genetics.104.031955
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- Article
Transcript level and sequence determinants of protein abundance and noise in Escherichia coli.
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- Nucleic Acids Research, 2014, v. 42, n. 8, p. 4791, doi. 10.1093/nar/gku126
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- Article
Measurement and modeling of intrinsic transcription terminators.
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- Nucleic Acids Research, 2013, v. 41, n. 9, p. 5139, doi. 10.1093/nar/gkt163
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- Article
metaMicrobesOnline: phylogenomic analysis of microbial communities.
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- Nucleic Acids Research, 2013, v. 41, p. D648, doi. 10.1093/nar/gks1202
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- Publication type:
- Article
RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.
- Published in:
- Nucleic Acids Research, 2012, v. 40, p. W604, doi. 10.1093/nar/gks562
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- Publication type:
- Article
Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals.
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- Nucleic Acids Research, 2012, v. 40, n. 13, p. 5775, doi. 10.1093/nar/gks168
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- Publication type:
- Article
Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals.
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- Nucleic Acids Research, 2012, v. 40, n. 12, p. 5775, doi. 10.1093/nar/gks168
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- Publication type:
- Article
Bayesian multiple-instance motif discovery with BAMBI: inference of recombinase and transcription factor binding sites.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 21, p. e146, doi. 10.1093/nar/gkr745
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- Publication type:
- Article
GLAMM: Genome-Linked Application for Metabolic Maps.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W400, doi. 10.1093/nar/gkr433
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- Publication type:
- Article
A universal TagModule collection for parallel genetic analysis of microorganisms.
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- Nucleic Acids Research, 2010, v. 38, n. 14, p. e146, doi. 10.1093/nar/gkq419
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- Publication type:
- Article
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W299, doi. 10.1093/nar/gkq531
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- Publication type:
- Article
MicrobesOnline: an integrated portal for comparative and functional genomics.
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- Nucleic Acids Research, 2010, v. 38, p. D396, doi. 10.1093/nar/gkp919
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- Publication type:
- Article
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.
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- Nucleic Acids Research, 2010, v. 38, p. D111, doi. 10.1093/nar/gkp894
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- Publication type:
- Article
Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation.
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- Nucleic Acids Research, 2009, v. 37, n. 9, p. 2926, doi. 10.1093/nar/gkp164
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- Article
A fast comparative genome browser for diverse bacteria and archaea.
- Published in:
- PLoS ONE, 2024, v. 19, n. 4, p. 1, doi. 10.1371/journal.pone.0301871
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- Article
KBase: The United States Department of Energy Systems Biology Knowledgebase.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 7, p. 566, doi. 10.1038/nbt.4163
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- Article
Metabolomic data streaming for biology-dependent data acquisition.
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- Nature Biotechnology, 2014, v. 32, n. 6, p. 524, doi. 10.1038/nbt.2927
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- Article
RNA processing enables predictable programming of gene expression.
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- Nature Biotechnology, 2012, v. 30, n. 10, p. 1002, doi. 10.1038/nbt.2355
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- Article
Regulation of transcription by unnatural amino acids.
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- Nature Biotechnology, 2011, v. 29, n. 2, p. 164, doi. 10.1038/nbt.1741
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- Article
Deviant effects in molecular reaction pathways.
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- Nature Biotechnology, 2006, v. 24, n. 10, p. 1235, doi. 10.1038/nbt1253
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- Article
Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 11, p. 2360, doi. 10.1038/ismej.2015.45
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- Article
Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 6, p. 1295, doi. 10.1038/ismej.2014.216
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- Article
Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 9, p. 1790, doi. 10.1038/ismej.2013.60
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- Article
Functional responses of methanogenic archaea to syntrophic growth.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 11, p. 2045, doi. 10.1038/ismej.2012.60
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- Publication type:
- Article
Impact of elevated nitrate on sulfate-reducing bacteria: a comparative Study of Desulfovibrio vulgaris.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 11, p. 1386, doi. 10.1038/ismej.2010.59
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- Article
Precise and reliable gene expression via standard transcription and translation initiation elements.
- Published in:
- Nature Methods, 2013, v. 10, n. 4, p. 354, doi. 10.1038/nmeth.2404
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- Article
Quantitative estimation of activity and quality for collections of functional genetic elements.
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- Nature Methods, 2013, v. 10, n. 4, p. 347, doi. 10.1038/nmeth.2403
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- Article
An adaptor from translational to transcriptional control enables predictable assembly of complex regulation.
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- Nature Methods, 2012, v. 9, n. 11, p. 1088, doi. 10.1038/nmeth.2184
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- Publication type:
- Article
Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.
- Published in:
- PLoS Genetics, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pgen.1007147
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- Article
A tightly regulated inducible expression system utilizing the fim inversion recombination switch.
- Published in:
- Biotechnology & Bioengineering, 2006, v. 94, n. 1, p. 1, doi. 10.1002/bit.20916
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- Article
Principles of synthetic biology: a MOOC for an emerging field.
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- Synthetic Biology (23977000), 2019, v. 4, n. 1, p. N.PAG, doi. 10.1093/synbio/ysz010
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- Article
Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.
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- Standards in Genomic Sciences, 2013, v. 7, n. 3, p. 382, doi. 10.4056/sigs.3377516
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- Article
CORAL: A framework for rigorous self-validated data modeling and integrative, reproducible data analysis.
- Published in:
- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac089
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- Article
A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.855331
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- Article
Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Pseudomonas Co-culture Biofilms.
- Published in:
- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.757856
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- Article
Evaluating the Cost of Pharmaceutical Purification for a Long-Duration Space Exploration Medical Foundry.
- Published in:
- Frontiers in Microbiology, 2021, p. 1, doi. 10.3389/fmicb.2021.700863
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- Article
Characterization of Wastewater Treatment Plant Microbial Communities and the Effects of Carbon Sources on Diversity in Laboratory Models.
- Published in:
- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105689
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- Article
Hexavalent Chromium Reduction under Fermentative Conditions with Lactate Stimulated Native Microbial Communities.
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- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0083909
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- Publication type:
- Article
Rational and Evolutionary Engineering Approaches Uncover a Small Set of Genetic Changes Efficient for Rapid Xylose Fermentation in <i>Saccharomyces cerevisiae</i>.
- Published in:
- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0057048
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- Publication type:
- Article
Towards a Rigorous Network of Protein-Protein Interactions of the Model Sulfate Reducer Desulfovibrio vulgaris Hildenborough.
- Published in:
- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021470
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- Publication type:
- Article
Development of a Low Bias Method for Characterizing Viral Populations Using Next Generation Sequencing Technology.
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- PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013564
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- Article