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Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.
Published in:
Nature Biotechnology, 2007, v. 25, n. 2, p. 221, doi. 10.1038/nbt1282
By:
- Pel, Herman J.;
- de Winde, Johannes H.;
- Archer, David B.;
- Dyer, Paul S.;
- Hofmann, Gerald;
- Schaap, Peter J.;
- Turner, Geoffrey;
- de Vries, Ronald P.;
- Albang, Richard;
- Albermann, Kaj;
- Andersen, Mikael R.;
- Bendtsen, Jannick D.;
- Benen, Jacques A. E.;
- van den Berg, Marco;
- Breestraat, Stefaan;
- Caddick, Mark X.;
- Contreras, Roland;
- Cornell, Michael;
- Coutinho, Pedro M.;
- Danchin, Etienne G. J.
Publication type:
Article
Impact of the native-state stability of human lysozyme variants on protein secretion by Pichia pastoris.
Published in:
FEBS Journal, 2006, v. 273, n. 4, p. 711, doi. 10.1111/j.1742-4658.2005.05099.x
By:
- Kumita, Janet R.;
- Johnson, Russell J. K.;
- Alcocer, Marcos J. C.;
- Dumoulin, Mireille;
- Holmqvist, Fredrik;
- McCammon, Margaret G.;
- Robinson, Carol V.;
- Archer, David B.;
- Dobson, Christopher M.
Publication type:
Article
Application of carbohydrate arrays coupled with mass spectrometry to detect activity of plant-polysaccharide degradative enzymes from the fungus Aspergillus niger.
Published in:
Scientific Reports, 2017, p. 43117, doi. 10.1038/srep43117
By:
- van Munster, Jolanda M.;
- Thomas, Baptiste;
- Riese, Michel;
- Davis, Adrienne L.;
- Gray, Christopher J.;
- Archer, David B.;
- Flitsch, Sabine L.
Publication type:
Article
Endoplasmic reticulum stress leads to the selective transcriptional downregulation of the glucoamylase gene in Aspergillus niger.
Published in:
Molecular Microbiology, 2004, v. 53, n. 6, p. 1731, doi. 10.1111/j.1365-2958.2004.04236.x
By:
- Al-Sheikh, Hashem;
- Watson, Adrian J.;
- Lacey, Georgina A.;
- Punt, Peter J.;
- MacKenzie, Donald A.;
- Jeenes, David J.;
- Pakula, Tiina;
- Penttilä, Merja;
- Alcocer, Marcos J.C.;
- Archer, David B.
Publication type:
Article
Native-State Stability Determines the Extent of Degradation Relative to Secretion of Protein Variants from Pichia pastoris.
Published in:
PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022692
By:
- Whyteside, Graham;
- Alcocer, Marcos J. C.;
- Kumita, Janet R.;
- Dobson, Christopher M.;
- Lazarou, Maria;
- Pleass, Richard J.;
- Archer, David B.
Publication type:
Article
Process development for the continuous production of heterologous proteins by the industrial yeast, Komagataella phaffii.
Published in:
Biotechnology & Bioengineering, 2018, v. 115, n. 12, p. 2962, doi. 10.1002/bit.26846
By:
- Cankorur‐Cetinkaya, Ayca;
- Narraidoo, Nathalie;
- Kasavi, Ceyda;
- Slater, Nigel K.H.;
- Archer, David B.;
- Oliver, Stephen G.
Publication type:
Article
Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments.
Published in:
Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0700-9
By:
- Daly, Paul;
- van Munster, Jolanda M.;
- Blythe, Martin J.;
- Ibbett, Roger;
- Kokolski, Matt;
- Gaddipati, Sanyasi;
- Lindquist, Erika;
- Singan, Vasanth R.;
- Barry, Kerrie W.;
- Lipzen, Anna;
- Chew Yee Ngan;
- Petzold, Christopher J.;
- Chan, Leanne Jade G.;
- Pullan, Steven T.;
- Delmas, Stéphane;
- Waldron, Paul R.;
- Grigoriev, Igor V.;
- Tucker, Gregory A.;
- Simmons, Blake A.;
- Archer, David B.
Publication type:
Article
Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger.
Published in:
BMC Genomics, 2007, v. 8, p. 1, doi. 10.1186/1471-2164-8-158
By:
- Guillemette, Thomas;
- van Peij, Noël NME;
- Goosen, Theo;
- Lanthaler, Karin;
- Robson, Geoffrey D;
- van den Hondel, Cees AMJJ;
- Stam, Hein;
- Archer, David B
Publication type:
Article
Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.
Published in:
2006
By:
- Nierman, William C.;
- Pain, Arnab;
- Anderson, Michael J.;
- Wortman, Jennifer R.;
- Kim, H. Stanley;
- Arroyo, Javier;
- Berriman, Matthew;
- Abe, Keietsu;
- Archer, David B.;
- Bermejo, Clara;
- Bennett, Joan;
- Bowyer, Paul;
- Chen, Dan;
- Collins, Matthew;
- Coulsen, Richard;
- Davies, Robert;
- Dyer, Paul S.;
- Farman, Mark;
- Fedorova, Nadia;
- Fedorova, Natalie
Publication type:
Correction Notice
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.
Published in:
Nature, 2005, v. 438, n. 7071, p. 1151, doi. 10.1038/nature04332
By:
- Nierman, William C.;
- Pain, Arnab;
- Anderson, Michael J.;
- Wortman, Jennifer R.;
- Kim, H. Stanley;
- Arroyo, Javier;
- Berriman, Matthew;
- Abe, Keietsu;
- Archer, David B.;
- Bermejo, Clara;
- Bennett, Joan;
- Bowyer, Paul;
- Chen, Dan;
- Collins, Matthew;
- Coulsen, Richard;
- Davies, Robert;
- Dyer, Paul S.;
- Farman, Mark;
- Fedorova, Nadia;
- Fedorova, Natalie
Publication type:
Article
A camelid antibody fragment inhibits the formation of amyloid fibrils by human lysozyme.
Published in:
Nature, 2003, v. 424, n. 6950, p. 783, doi. 10.1038/nature01870
By:
- Dumoulin, Mireille;
- Last, Alexander M.;
- Desmytr, Aline;
- Decanniere, Klass;
- Canet, Denis;
- Larsson, Göran;
- Spencer, Andrew;
- Archer, David B.;
- Sasse, Jurgen;
- Muyldermans, Serge;
- Wyns, Lode;
- Redfield, Christina;
- Matagne, André;
- Robinson, Carol V.;
- Dobson, Christopher M.
Publication type:
Article
Activation of the unfolded protein response in Pichia pastoris requires splicing of a HAC1 mRNA intron and retention of the C-terminal tail of Hac1p
Published in:
FEBS Letters, 2011, v. 585, n. 7, p. 1037, doi. 10.1016/j.febslet.2011.02.036
By:
- Whyteside, Graham;
- Nor, Rohana Mat;
- Alcocer, Marcos J.C.;
- Archer, David B.
Publication type:
Article
Local cooperativity in the unfolding of an amyloidogenic variant of human lysozyme.
Published in:
Nature Structural Biology, 2002, v. 9, n. 4, p. 308, doi. 10.1038/nsb768
By:
- Canet, Denis;
- Last, Alexander M.;
- Tito, Paula;
- Sunde, Margaret;
- Spencer, Andrew;
- Archer, David B.;
- Redfield, Christina;
- Robinson, Carol V.;
- Dobson, Christopher M.
Publication type:
Article
The Potential Allergenicity of Two 2S Albumins from Soybean (Glycine max): A Protein Microarray Approach.
Published in:
International Archives of Allergy & Immunology, 2006, v. 141, n. 2, p. 91, doi. 10.1159/000094535
By:
- Lin, Jing;
- Shewry, Peter R.;
- Archer, David B.;
- Beyer, Kirsten;
- Niggemann, Bodo;
- Haas, Helmut;
- Wilson, Philip;
- Alcocer, Marcos J. C.
Publication type:
Article
Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing.
Published in:
PLoS Genetics, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.pgen.1002875
By:
- Delmas, Stéphane;
- Pullan, Steven T.;
- Gaddipati, Sanyasi;
- Kokolski, Matthew;
- Malla, Sunir;
- Blythe, Martin J.;
- Ibbett, Roger;
- Campbell, Maria;
- Liddell, Susan;
- Aboobaker, Aziz;
- Tucker, Gregory A.;
- Archer, David B.
Publication type:
Article
Transcript-specific translational regulation in the unfolded protein response of Saccharomyces cerevisiae
Published in:
FEBS Letters, 2008, v. 582, n. 4, p. 503, doi. 10.1016/j.febslet.2008.01.009
By:
- Payne, Tom;
- Hanfrey, Colin;
- Bishop, Amy L.;
- Michael, Anthony J.;
- Avery, Simon V.;
- Archer, David B.
Publication type:
Article
Microwave radiation can alter protein conformation without bulk heating
Published in:
FEBS Letters, 2003, v. 543, n. 1-3, p. 93, doi. 10.1016/S0014-5793(03)00413-7
By:
- de Pomerai, David I.;
- Smith, Brette;
- Dawe, Adam;
- North, Kate;
- Smith, Tim;
- Archer, David B.;
- Duce, Ian R.;
- Jones, Donald;
- Candido, E. Peter M.
Publication type:
Article
Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-541
By:
- Ries, Laure;
- Pullan, Steven T.;
- Delmas, Stéphane;
- Malla, Sunir;
- Blythe, Martin J.;
- Archer, David B.
Publication type:
Article
Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-246
By:
- Novodvorska, Michaela;
- Hayer, Kimran;
- Pullan, Steven T.;
- Wilson, Raymond;
- Blythe, Martin J.;
- Stam, Hein;
- Stratford, Malcolm;
- Archer, David B.
Publication type:
Article
Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 350, doi. 10.1186/1471-2164-13-350
By:
- S.P. Carvalho, Neuza D.;
- J�rgensen, Thomas R.;
- Arentshorst, Mark;
- Nitsche, Benjamin M.;
- van den Hondel, Cees A.M.J.J.;
- Archer, David B.;
- J. Ram, Arthur F.
Publication type:
Article

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