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Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters.
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- Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0253-y
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- Article
Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life.
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- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00738
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- Article
Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea.
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- Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01883
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Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00679
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- Article
Lake bacterioplankton dynamics over diurnal timescales.
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- Freshwater Biology, 2017, v. 62, n. 1, p. 191, doi. 10.1111/fwb.12861
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Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?
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- Environmental Microbiology Reports, 2012, v. 4, n. 3, p. 367, doi. 10.1111/j.1758-2229.2012.00345.x
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- Article
Periodontal Health and Oral Microbiota in Patients with Rheumatoid Arthritis.
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- Journal of Clinical Medicine, 2019, v. 8, n. 5, p. 630, doi. 10.3390/jcm8050630
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Salivary Microbiota and Host-Inflammatory Responses in Periodontitis Affected Individuals With and Without Rheumatoid Arthritis.
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- Frontiers in Cellular & Infection Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fcimb.2022.841139
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Titration-free massively parallel pyrosequencing using trace amounts of starting material.
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- Nucleic Acids Research, 2010, v. 38, n. 13, p. e137, doi. 10.1093/nar/gkq332
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- Article
Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton.
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- PLoS ONE, 2024, v. 19, n. 1, p. 1, doi. 10.1371/journal.pone.0296672
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- Article
FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples.
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- PLoS ONE, 2023, v. 18, n. 7, p. 1, doi. 10.1371/journal.pone.0286272
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- Article
Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1413, doi. 10.1038/ismej.2013.26
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- Article
Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 6, p. 1127, doi. 10.1038/ismej.2011.184
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- Article
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 10, p. 1571, doi. 10.1038/ismej.2011.41
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- Article
Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 2, p. 171, doi. 10.1038/ismej.2009.108
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- Article
Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2008, v. 2, n. 8, p. 853, doi. 10.1038/ismej.2008.38
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Binning metagenomic contigs by coverage and composition.
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- Nature Methods, 2014, v. 11, n. 11, p. 1144, doi. 10.1038/nmeth.3103
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Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans.
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- Scientific Reports, 2016, p. 22919, doi. 10.1038/srep22919
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Machine Learning Predicts the Presence of 2,4,6-Trinitrotoluene in Sediments of a Baltic Sea Munitions Dumpsite Using Microbial Community Compositions.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.626048
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- Article
The environment drives microbial trait variability in aquatic habitats.
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- Molecular Ecology, 2020, v. 29, n. 23, p. 4605, doi. 10.1111/mec.15656
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Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia.
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- PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095567
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- Article
Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089549
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A Method for Metagenomics of Helicobacter pylori from Archived Formalin-Fixed Gastric Biopsies Permitting Longitudinal Studies of Carcinogenic Risk.
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- PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0026442
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Rapid Screening of Complex DNA Samples by Single- Molecule Amplification and Sequencing.
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- PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0019723
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- Article
Nitrogenase Gene Amplicons from Global Marine Surface Waters Are Dominated by Genes of Non-Cyanobacteria.
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- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0019223
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- Article
Short-Term Antibiotic Treatment Has Differing Long- Term Impacts on the Human Throat and Gut Microbiome.
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- PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009836
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- Article
Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing.
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- PLoS ONE, 2008, v. 3, n. 7, p. 1, doi. 10.1371/journal.pone.0002836
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- Article
Functional responses of key marine bacteria to environmental change – toward genetic counselling for coastal waters.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.869093
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- Article
Rolf Bernander (1956-2014): pioneer of the archaeal cell cycle.
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- Molecular Microbiology, 2014, v. 92, n. 5, p. 903, doi. 10.1111/mmi.12608
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- Article
Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07631-x
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- Article
Optimizing insect metabarcoding using replicated mock communities.
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- Methods in Ecology & Evolution, 2023, v. 14, n. 4, p. 1130, doi. 10.1111/2041-210X.14073
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- Article
The Fennoscandian Shield deep terrestrial virosphere suggests slow motion 'boom and burst' cycles.
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- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01810-1
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- Article
Genome sequence of segmented filamentous bacteria present in the human intestine.
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- Communications Biology, 2020, v. 3, n. 1, p. N.PAG, doi. 10.1038/s42003-020-01214-7
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Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes.
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- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-0856-x
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- Article
A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea.
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- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-023-02825-5
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Evaluating metagenomic assembly approaches for biome-specific gene catalogues.
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- Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01259-2
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Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change.
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- Environmental Microbiology, 2018, v. 20, n. 8, p. 3083, doi. 10.1111/1462-2920.14371
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Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers.
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- Environmental Microbiology, 2017, v. 19, n. 3, p. 1222, doi. 10.1111/1462-2920.13650
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- Article
Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.
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- Environmental Microbiology, 2015, v. 17, n. 7, p. 2459, doi. 10.1111/1462-2920.12720
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- Article
Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock.
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- Nature Communications, 2016, v. 7, n. 10, p. 12770, doi. 10.1038/ncomms12770
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Phasing of single DNA molecules by massively parallel barcoding.
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- Nature Communications, 2015, v. 6, n. 6, p. 7173, doi. 10.1038/ncomms8173
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- Article
Metagenome-assembled genomes uncover a global brackish microbiome.
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- Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0834-7
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- Article
Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02129
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- Article
Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01561
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- Article
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0550-0
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- Article
Deltaproteobacteria and Spirochaetes-Like Bacteria Are Abundant Putative Mercury Methylators in Oxygen-Deficient Water and Marine Particles in the Baltic Sea.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.574080
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- Article
Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis.
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- Frontiers in Cellular & Infection Microbiology, 2019, v. 9, p. N.PAG, doi. 10.3389/fcimb.2019.00216
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- Article
Epidemiological and environmental investigation of the 'big four' Vibrio species, 1994 to 2021: a Baltic Sea retrospective study.
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- Eurosurveillance (15607917), 2024, v. 29, n. 32, p. 1, doi. 10.2807/1560-7917.ES.2024.29.32.2400075
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Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29920-7
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- Article
Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root‐associated soil of a wild perennial herb.
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- New Phytologist, 2018, v. 220, n. 4, p. 1248, doi. 10.1111/nph.15088
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