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A Statistical Multiprobe Model for Analyzing cis and trans Genes in Genetical Genomics Experiments With Short-Oligonucleotide Arrays.
Published in:
Genetics, 2005, v. 171, n. 3, p. 1437, doi. 10.1534/genetics.105.045930
By:
- Alberts, Rudi;
- Terpstra, Peter;
- Bystrykh, Leonid V.;
- de Haan, Gerald;
- Jansen, Ritsert C.
Publication type:
Article
Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Published in:
Nature Genetics, 2015, v. 47, n. 9, p. 979, doi. 10.1038/ng.3359
By:
- Shah, Tejas;
- Barrett, Jeffrey C;
- Daryani, Naser E;
- B K, Thelma;
- Orchard, Timothy R;
- Ng, Siew C;
- Weersma, Rinse K;
- Jostins, Luke;
- Vahedi, Homayon;
- Juyal, Ramesh C;
- Midha, Vandana;
- Ripke, Stephan;
- Daly, Mark J;
- Alberts, Rudi;
- Poustchi, Hossein;
- Kim, Won Ho;
- Kubo, Michiaki;
- Juyal, Garima;
- Newman, William G;
- Franke, Andre
Publication type:
Article
Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.
Published in:
Nature Genetics, 2005, v. 37, n. 3, p. 225, doi. 10.1038/ng1497
By:
- Bystrykh, Leonid;
- Weersing, Ellen;
- Dontje, Bert;
- Sutton, Sue;
- Pletcher, Mathew T;
- Wiltshire, Tim;
- Su, Andrew I;
- Vellenga, Edo;
- Wang, Jintao;
- Manly, Kenneth F;
- Lu, Lu;
- Chesler, Elissa J;
- Alberts, Rudi;
- Jansen, Ritsert C;
- Williams, Robert W;
- Cooke, Michael P;
- de Haan, Gerald
Publication type:
Article
Bioinformatics tools and database resources for systems genetics analysis in mice—a short review and an evaluation of future needs.
Published in:
Briefings in Bioinformatics, 2012, v. 13, n. 2, p. 135, doi. 10.1093/bib/bbr026
By:
- Durrant, Caroline;
- Swertz, Morris A.;
- Alberts, Rudi;
- Arends, Danny;
- Möller, Steffen;
- Mott, Richard;
- Prins, Pjotr;
- van der Velde, K. Joeri;
- Jansen, Ritsert C.;
- Schughart, Klaus
Publication type:
Article
Combining microarrays and genetic analysis.
Published in:
Briefings in Bioinformatics, 2005, v. 6, n. 2, p. 135, doi. 10.1093/bib/6.2.135
By:
- Alberts, Rudi;
- Jingyuan Fu;
- Swertz, Morris A.;
- Lubbers, L. Alrik;
- Albers, Casper J.;
- Jansen, Ritsert C.
Publication type:
Article
High frequency of bedaquiline resistance in programmatically treated drug-resistant TB patients with sustained culture-positivity in Cape Town, South Africa.
Published in:
International Journal of Mycobacteriology, 2021, v. 10, p. 9, doi. 10.4103/2212-5531.307132
By:
- Derendinger, Brigitta;
- Dippenaar, Anzaan;
- de Vos, Margaretha;
- Alberts, Rudi;
- Sirgel, Frederick;
- Dolby, Tania;
- Spies, Claudia;
- Rigouts, Leen;
- Metcalfe, John;
- Engelthaler, David;
- Warren, Rob;
- Cox, Helen;
- Theron, Grant
Publication type:
Article
Systems Genetics of Liver Fibrosis: Identification of Fibrogenic and Expression Quantitative Trait Loci in the BXD Murine Reference Population.
Published in:
PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089279
By:
- Hall, Rabea A.;
- Liebe, Roman;
- Hochrath, Katrin;
- Kazakov, Andrey;
- Alberts, Rudi;
- Laufs, Ulrich;
- Böhm, Michael;
- Fischer, Hans-Peter;
- Williams, Robert W.;
- Schughart, Klaus;
- Weber, Susanne N.;
- Lammert, Frank
Publication type:
Article
Genome-wide analysis of the mouse lung transcriptome reveals novel molecular gene interaction networks and cell-specific expression signatures.
Published in:
2012
By:
- Alberts, Rudi;
- Lu Lu;
- Williams, Robert W.;
- Schughart, Klaus
Publication type:
Correction Notice
Genome-wide analysis of the mouse lung transcriptome reveals novel molecular gene interaction networks and cell-specific expression signatures.
Published in:
2011
By:
- Alberts, Rudi;
- Lu Lu;
- Williams, Robert W.;
- Schughart, Klaus;
- Lu, Lu
Publication type:
journal article
QTLminer: identifying genes regulating quantitative traits.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 516, doi. 10.1186/1471-2105-11-516
By:
- Alberts, Rudi;
- Schughart, Klaus
Publication type:
Article
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
Published in:
BMC Bioinformatics, 2007, v. 8, p. 132, doi. 10.1186/1471-2105-8-132
By:
- Alberts, Rudi;
- Terpstra, Peter;
- Hardonk, Menno;
- Bystrykh, Leonid V;
- de Haan, Gerald;
- Breitling, Rainer;
- Nap, Jan-Peter;
- Jansen, Ritsert C
Publication type:
Article
Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics.
Published in:
BMC Research Notes, 2010, v. 3, p. 1, doi. 10.1186/1756-0500-3-16
By:
- Gruenberger, Michael;
- Alberts, Rudi;
- Smedley, Damian;
- Swertz, Morris;
- Schofield, Paul;
- Schughart, Klaus
Publication type:
Article
ZDOG: zooming in on dominating genes with mutations in cancer pathways.
Published in:
BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3326-z
By:
- Alberts, Rudi;
- Chen, Jinyu;
- Zhang, Louxin
Publication type:
Article
Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome.
Published in:
Science Translational Medicine, 2018, v. 10, n. 472, p. N.PAG, doi. 10.1126/scitranslmed.aap8914
By:
- Vich Vila, Arnau;
- Imhann, Floris;
- Collij, Valerie;
- Jankipersadsing, Soesma A.;
- Gurry, Thomas;
- Mujagic, Zlatan;
- Kurilshikov, Alexander;
- Bonder, Marc Jan;
- Jiang, Xiaofang;
- Tigchelaar, Ettje F.;
- Dekens, Jackie;
- Peters, Vera;
- Voskuil, Michiel D.;
- Visschedijk, Marijn C.;
- van Dullemen, Hendrik M.;
- Keszthelyi, Daniel;
- Swertz, Morris A.;
- Franke, Lude;
- Alberts, Rudi;
- Festen, Eleonora A. M.
Publication type:
Article
Pooled Resequencing of 122 Ulcerative Colitis Genes in a Large Dutch Cohort Suggests Population-Specific Associations of Rare Variants in MUC2.
Published in:
PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0159609
By:
- Visschedijk, Marijn C.;
- Alberts, Rudi;
- Mucha, Soren;
- Deelen, Patrick;
- de Jong, Dirk J.;
- Pierik, Marieke;
- Spekhorst, Lieke M.;
- Imhann, Floris;
- van der Meulen-de Jong, Andrea E.;
- van der Woude, C. Janneke;
- van Bodegraven, Adriaan A.;
- Oldenburg, Bas;
- Löwenberg, Mark;
- Dijkstra, Gerard;
- Ellinghaus, David;
- Schreiber, Stefan;
- Wijmenga, Cisca;
- null, null;
- Rivas, Manuel A.;
- Franke, Andre
Publication type:
Article
affyGG: computational protocols for genetical genomics with Affymetrix arrays.
Published in:
Bioinformatics, 2008, v. 24, n. 3, p. 433, doi. 10.1093/bioinformatics/btm614
By:
- Rudi Alberts;
- Gonzalo Vera;
- Ritsert C. Jansen
Publication type:
Article
Annexin-A1 deficiency attenuates stress-induced tumor growth via fatty acid metabolism in mice: an Integrated multiple omics analysis on the stress-microbiome-metabolite-epigenetic-oncology (SMMEO) axis.
Published in:
Theranostics, 2022, v. 12, n. 8, p. 3794, doi. 10.7150/thno.68611
By:
- Jianzhou Cui;
- Sachaphibulkij, Karishma;
- Wen Shiun Teo;
- Hong Meng Lim;
- Li Zou;
- Choon Nam Ong;
- Alberts, Rudi;
- Jinmiao Chen;
- Lim, Lina H. K.
Publication type:
Article
Genomic and Expression Analyses Identify a Disease-Modifying Variant for Fibrostenotic Crohn's Disease.
Published in:
Journal of Crohn's & Colitis, 2018, v. 12, n. 5, p. 582, doi. 10.1093/ecco-jcc/jjy001
By:
- Visschedijk, Marijn C.;
- Spekhorst, Lieke M.;
- Shih-Chin Cheng;
- van Loo, Ellen S.;
- Jansen, B. H. Dianne;
- Blokzijl, Tjasso;
- Kil, Hyunsuk;
- de Jong, Dirk J.;
- Pierik, Marieke;
- Maljaars, Jeroen P. W. J.;
- van der Woude, C. Janneke;
- van Bodegraven, Adriaan A.;
- Oldenburg, Bas;
- Löwenberg, Mark;
- Nieuwenhuijs, Vincent B.;
- Imhann, Floris;
- van Sommeren, Suzanne;
- Alberts, Rudi;
- Xavier, Ramnik J.;
- Dijkstra, Gerard
Publication type:
Article
ATR-FTIR spectroscopy reveals genomic loci regulating the tissue response in high fat diet fed BXD recombinant inbred mouse strains.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-386
By:
- Dogan, Ayca;
- Lasch, Peter;
- Neuschl, Christina;
- Millrose, Marion K.;
- Alberts, Rudi;
- Schughart, Klaus;
- Naumann, Dieter;
- Brockmann, Gudrun A.
Publication type:
Article
Distinct gene loci control the host response to influenza H1N1 virus infection in a time-dependent manner.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 411, doi. 10.1186/1471-2164-13-411
By:
- Nedelko, Tatiana;
- Kollmus, Heike;
- Klawonn, Frank;
- Spijker, Sabine;
- Lu Lu;
- He�man, Manuela;
- Alberts, Rudi;
- Williams, Robert W.;
- Schughart, Klaus
Publication type:
Article
Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies.
Published in:
BMC Genomics, 2010, v. 11, p. 503, doi. 10.1186/1471-2164-11-503
By:
- Michaelson, Jacob J.;
- Alberts, Rudi;
- Schughart, Klaus;
- Beyer, Andreas
Publication type:
Article
Data-driven assessment of eQTL mapping methods.
Published in:
BMC Genomics, 2010, v. 11, p. 502, doi. 10.1186/1471-2164-11-502
By:
- Michaelson, Jacob J.;
- Alberts, Rudi;
- Schughart, Klaus;
- Beyer, Andreas
Publication type:
Article
MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians.
Published in:
Bioinformatics, 2019, v. 35, n. 6, p. 1076, doi. 10.1093/bioinformatics/bty742
By:
- Velde, K Joeri van der;
- Imhann, Floris;
- Charbon, Bart;
- Pang, Chao;
- Enckevort, David van;
- Slofstra, Mariska;
- Barbieri, Ruggero;
- Alberts, Rudi;
- Hendriksen, Dennis;
- Kelpin, Fleur;
- Haan, Mark de;
- Boer, Tommy de;
- Haakma, Sido;
- Stroomberg, Connor;
- Scholtens, Salome;
- van de Geijn, Gert-Jan;
- Festen, Eleonora A M;
- Weersma, Rinse K;
- Swertz, Morris A
Publication type:
Article

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