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Massive Changes in Genome Architecture Accompany the Transition to Self-Fertility in the Filamentous Fungus Neurospora tetrasperma.
Published in:
Genetics, 2011, v. 189, n. 1, p. 55, doi. 10.1534/genetics.111.130690
By:
- Ellison, Christopher E.;
- Stajich, Jason E.;
- Jacobson, David J.;
- Natvig, Donald O.;
- Lapidus, Alla;
- Foster, Brian;
- Aerts, Andrea;
- Riley, Robert;
- Lindquist, Erika A.;
- Grigoriev, Igor V.;
- Taylor, John W.
Publication type:
Article
The Genome Portal of the Department of Energy Joint Genome Institute.
Published in:
Nucleic Acids Research, 2012, p. D26, doi. 10.1093/nar/gkr947
By:
- Grigoriev, Igor V.;
- Nordberg, Henrik;
- Shabalov, Igor;
- Aerts, Andrea;
- Cantor, Mike;
- Goodstein, David;
- Kuo, Alan;
- Minovitsky, Simon;
- Nikitin, Roman;
- Ohm, Robin A.;
- Otillar, Robert;
- Poliakov, Alex;
- Ratnere, Igor;
- Riley, Robert;
- Smirnova, Tatyana;
- Rokhsar, Daniel;
- Dubchak, Inna
Publication type:
Article
Haploinsufficiency of interferon regulatory factor 6 alters brain morphology in the mouse.
Published in:
American Journal of Medical Genetics. Part A, 2014, v. 164A, n. 3, p. 655, doi. 10.1002/ajmg.a.36333
By:
- Aerts, Andrea;
- DeVolder, Ian;
- Weinberg, Seth M.;
- Thedens, Dan;
- Dunnwald, Martine;
- Schutte, Brian C.;
- Nopoulos, Peg
Publication type:
Article
Genome sequence of the model mushroom Schizophyllum commune.
Published in:
Nature Biotechnology, 2010, v. 28, n. 9, p. 957, doi. 10.1038/nbt.1643
By:
- Ohm, Robin A.;
- De Jong, Jan F.;
- Lugones, Luis G.;
- Aerts, Andrea;
- Kothe, Erika;
- Stajich, Jason E.;
- De Vries, Ronald P.;
- Record, Eric;
- Levasseur, Anthony;
- Baker, Scott E.;
- Bartholomew, Kirk A.;
- Coutinho, Pedro M.;
- Erdmann, Susann;
- Fowler, Thomas J.;
- Gathman, Allen C.;
- Lombard, Vincent;
- Henrissat, Bernard;
- Knabe, Nicole;
- Kües, Ursula;
- Lilly, Walt W.
Publication type:
Article
Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis.
Published in:
Nature Biotechnology, 2007, v. 25, n. 3, p. 319, doi. 10.1038/nbt1290
By:
- Jeffries, Thomas W;
- Grigoriev, Igor V;
- Grimwood, Jane;
- Laplaza, José M;
- Aerts, Andrea;
- Salamov, Asaf;
- Schmutz, Jeremy;
- Lindquist, Erika;
- Dehal, Paramvir;
- Shapiro, Harris;
- Yong-Su Jin;
- Passoth, Volkmar;
- Richardson, Paul M
Publication type:
Article
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.
Published in:
PLoS Genetics, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pgen.1007322
By:
- Druzhinina, Irina S.;
- Chenthamara, Komal;
- Zhang, Jian;
- Atanasova, Lea;
- Yang, Dongqing;
- Miao, Youzhi;
- Rahimi, Mohammad J.;
- Grujic, Marica;
- Cai, Feng;
- Pourmehdi, Shadi;
- Salim, Kamariah Abu;
- Pretzer, Carina;
- Kopchinskiy, Alexey G.;
- Henrissat, Bernard;
- Kuo, Alan;
- Hundley, Hope;
- Wang, Mei;
- Aerts, Andrea;
- Salamov, Asaf;
- Lipzen, Anna
Publication type:
Article
Genome-wide analysis of cytochrome P450s of <italic>Trichoderma</italic> spp.: annotation and evolutionary relationships.
Published in:
Fungal Biology & Biotechnology, 2018, v. 5, n. 1, p. N.PAG, doi. 10.1186/s40694-018-0056-3
By:
- Chadha, Sonia;
- Mehetre, Sayaji T.;
- Bansal, Ravindra;
- Kuo, Alan;
- Aerts, Andrea;
- Grigoriev, Igor V.;
- Druzhinina, Irina S.;
- Mukherjee, Prasun K.
Publication type:
Article
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants.
Published in:
Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1590, doi. 10.1093/gbe/evv090
By:
- Ying Chang;
- Sishuo Wang;
- Satoshi Sekimoto;
- Aerts, Andrea L.;
- Choi, Cindy;
- Clum, Alicia;
- LaButti, Kurt M.;
- Lindquist, Erika A.;
- Chew Yee Ngan;
- Ohm, Robin A.;
- Salamov, Asaf A.;
- Grigoriev, Igor V.;
- Spatafora, Joseph W.;
- Berbee, Mary L.
Publication type:
Article
The sequence and analysis of duplication-rich human chromosome 16.
Published in:
Nature, 2004, v. 432, n. 7020, p. 988, doi. 10.1038/nature03187
By:
- Martin, Joel;
- Han, Cliff;
- Gordon, Laurie A.;
- Terry, Astrid;
- Prabhakar, Shyam;
- Xinwei She;
- Xie, Gary;
- Hellsten, Uffe;
- Chan, Yee Man;
- Altherr, Michael;
- Couronne, Olivier;
- Aerts, Andrea;
- Bajorek, Eva;
- Black, Stacey;
- Blumer, Heather;
- Branscomb, Elbert;
- Brown, Nancy C.;
- Bruno, William J.;
- Buckingham, Judith M.;
- Callen, David F.
Publication type:
Article
The DNA sequence and comparative analysis of human chromosome 5.
Published in:
Nature, 2004, v. 431, n. 7006, p. 268, doi. 10.1038/nature02919
By:
- Schmutz, Jeremy;
- Martin, Joel;
- Terry, Astrid;
- Couronne, Olivier;
- Grimwood, Jane;
- Lowry, Steve;
- Gordon, Laurie A.;
- Scott, Duncan;
- Gary Xie;
- Wayne Huang;
- Hellsten, Uffe;
- Tran-Gyamfi, Mary;
- Xinwei She;
- Prabhakar, Shyam;
- Aerts, Andrea;
- Altherr, Michael;
- Bajorek, Eva;
- Black, Stacey;
- Branscomb, Elbert;
- Caoile, Chenier
Publication type:
Article
The DNA sequence and biology of human chromosome 19.
Published in:
Nature, 2004, v. 428, n. 6982, p. 529, doi. 10.1038/nature02399
By:
- Grimwood, Jane;
- Gordon, Laurie A.;
- Olsen, Anne;
- Terry, Astrid;
- Schmutz, Jeremy;
- Lamerdin, Jane;
- Hellsten, Uffe;
- Goodstein, David;
- Couronne, Olivier;
- Tran-Gyamfi, Mary;
- Aerts, Andrea;
- Altherr, Michael;
- Ashworth, Linda;
- Bajorek, Eva;
- Black, Stacey;
- Branscomb, Elbert;
- Caenepeel, Sean;
- Carrano, Anthony;
- Caoile, Chenier;
- Chan, Yee Man
Publication type:
Article
Insights into bilaterian evolution from three spiralian genomes.
Published in:
Nature, 2013, v. 493, n. 7433, p. 526, doi. 10.1038/nature11696
By:
- Simakov, Oleg;
- Marletaz, Ferdinand;
- Cho, Sung-Jin;
- Edsinger-Gonzales, Eric;
- Havlak, Paul;
- Hellsten, Uffe;
- Kuo, Dian-Han;
- Larsson, Tomas;
- Lv, Jie;
- Arendt, Detlev;
- Savage, Robert;
- Osoegawa, Kazutoyo;
- de Jong, Pieter;
- Grimwood, Jane;
- Chapman, Jarrod A.;
- Shapiro, Harris;
- Aerts, Andrea;
- Otillar, Robert P.;
- Terry, Astrid Y.;
- Boore, Jeffrey L.
Publication type:
Article
The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.
Published in:
PLoS Genetics, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pgen.1003088
By:
- de Wit, Pierre J. G. M.;
- van der Burgt, Ate;
- Ökmen, Bilal;
- Stergiopoulos, Ioannis;
- Abd-Elsalam, Kamel A.;
- Aerts, Andrea L.;
- Bahkali, Ali H.;
- Beenen, Henriek G.;
- Chettri, Pranav;
- Cox, Murray P.;
- Datema, Erwin;
- de Vries, Ronald P.;
- Dhillon, Braham;
- Ganley, Austen R.;
- Griffiths, Scott A.;
- Guo, Yanan;
- Hamelin, Richard C.;
- Henrissat, Bernard;
- Kabir, M. Shahjahan;
- Jashni, Mansoor Karimi
Publication type:
Article
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis.
Published in:
PLoS Genetics, 2011, v. 7, n. 6, p. 1, doi. 10.1371/journal.pgen.1002070
By:
- Goodwin, Stephen B.;
- M'Barek, Sarrah Ben;
- Dhillon, Braham;
- Wittenberg, Alexander H. J.;
- Crane, Charles F.;
- Hane, James K.;
- Foster, Andrew J.;
- Van der Lee, Theo A. J.;
- Grimwood, Jane;
- Aerts, Andrea;
- Antoniw, John;
- Bailey, Andy;
- Bluhm, Burt;
- Bowler, Judith;
- Bristow, Jim;
- van der Burgt, Ate;
- Canto-Canché, Blondy;
- Churchill, Alice C. L.;
- Conde-Ferràez, Laura;
- Cools, Hans J.
Publication type:
Article
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.
Published in:
New Phytologist, 2012, v. 194, n. 4, p. 1001, doi. 10.1111/j.1469-8137.2012.04128.x
By:
- Olson, Åke;
- Aerts, Andrea;
- Asiegbu, Fred;
- Belbahri, Lassaad;
- Bouzid, Ourdia;
- Broberg, Anders;
- Canbäck, Björn;
- Coutinho, Pedro M.;
- Cullen, Dan;
- Dalman, Kerstin;
- Deflorio, Giuliana;
- van Diepen, Linda T.A.;
- Dunand, Christophe;
- Duplessis, Sébastien;
- Durling, Mikael;
- Gonthier, Paolo;
- Grimwood, Jane;
- Fossdal, Carl Gunnar;
- Hansson, David;
- Henrissat, Bernard
Publication type:
Article
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 444, doi. 10.1186/1471-2164-13-444
By:
- Hitoshi Suzuki;
- MacDonald, Jacqueline;
- Syed, Khajamohiddin;
- Salamov, Asaf;
- Chiaki Hori;
- Aerts, Andrea;
- Henrissat, Bernard;
- Wiebenga, Ad;
- vanKuyk, Patricia A.;
- Barry, Kerrie;
- Lindquist, Erika;
- LaButti, Kurt;
- Lapidus, Alla;
- Lucas, Susan;
- Coutinho, Pedro;
- Yunchen Gong;
- Masahiro Samejima;
- Radhakrishnan Mahadevan;
- Abou-Zaid, Mamdouh;
- de Vries, Ronald P.
Publication type:
Article
Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control.
Published in:
PLoS Genetics, 2016, v. 12, n. 8, p. 1, doi. 10.1371/journal.pgen.1005876
By:
- Arango Isaza, Rafael E.;
- Diaz-Trujillo, Caucasella;
- Dhillon, Braham;
- Aerts, Andrea;
- Carlier, Jean;
- Crane, Charles F.;
- V. de Jong, Tristan;
- de Vries, Ineke;
- Dietrich, Robert;
- Farmer, Andrew D.;
- Fortes Fereira, Claudia;
- Garcia, Suzana;
- Guzman, Mauricio;
- Hamelin, Richard C.;
- Lindquist, Erika A.;
- Mehrabi, Rahim;
- Quiros, Olman;
- Schmutz, Jeremy;
- Shapiro, Harris;
- Reynolds, Elizabeth
Publication type:
Article
Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.
Published in:
2015
By:
- de Wit, Pierre J. G. M.;
- van der Burgt, Ate;
- Ökmen, Bilal;
- Stergiopoulos, Ioannis;
- Abd-Elsalam, Kamel A.;
- Aerts, Andrea L.;
- Bahkali, Ali H.;
- Beenen, Henriek G.;
- Chettri, Pranav;
- Cox, Murray P.;
- Datema, Erwin;
- de Vries, Ronald P.;
- Dhillon, Braham;
- Ganley, Austen R.;
- Griffiths, Scott A.;
- Guo, Yanan;
- Hamelin, Richard C.;
- Henrissat, Bernard;
- Kabir, M. Shahjahan;
- Jashni, Mansoor Karimi
Publication type:
Correction Notice

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