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Aggressive Subsets of Metastatic Triple Negative Breast Cancer.
Published in:
2020
By:
- Singh, Jasneet;
- Asad, Sarah;
- Zhang, Yiqing;
- Nock, William;
- Adams, Elizabeth;
- Damicis, Adrienne;
- Ramaswamy, Bhuvaneswari;
- Williams, Nicole;
- Parsons, Heather A;
- Adalsteinsson, Viktor A;
- Winer, Eric P;
- Lin, Nancy U;
- Partridge, Ann H;
- Overmoyer, Beth;
- Stover, Daniel G
Publication type:
journal article
A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35076-w
By:
- Doebley, Anna-Lisa;
- Ko, Minjeong;
- Liao, Hanna;
- Cruikshank, A. Eden;
- Santos, Katheryn;
- Kikawa, Caroline;
- Hiatt, Joseph B.;
- Patton, Robert D.;
- De Sarkar, Navonil;
- Collier, Katharine A.;
- Hoge, Anna C. H.;
- Chen, Katharine;
- Zimmer, Anat;
- Weber, Zachary T.;
- Adil, Mohamed;
- Reichel, Jonathan B.;
- Polak, Paz;
- Adalsteinsson, Viktor A.;
- Nelson, Peter S.;
- MacPherson, David
Publication type:
Article
Modeling clonal structure over narrow time frames via circulating tumor DNA in metastatic breast cancer.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00895-x
By:
- Weber, Zachary T.;
- Collier, Katharine A.;
- Tallman, David;
- Forman, Juliet;
- Shukla, Sachet;
- Asad, Sarah;
- Rhoades, Justin;
- Freeman, Samuel;
- Parsons, Heather A.;
- Williams, Nicole O.;
- Barroso-Sousa, Romualdo;
- Stover, Elizabeth H.;
- Mahdi, Haider;
- Cibulskis, Carrie;
- Lennon, Niall J.;
- Ha, Gavin;
- Adalsteinsson, Viktor A.;
- Tolaney, Sara M.;
- Stover, Daniel G.
Publication type:
Article
Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer.
Published in:
Nature Biotechnology, 2014, v. 32, n. 5, p. 479, doi. 10.1038/nbt.2892
By:
- Lohr, Jens G;
- Adalsteinsson, Viktor A;
- Cibulskis, Kristian;
- Choudhury, Atish D;
- Rosenberg, Mara;
- Cruz-Gordillo, Peter;
- Francis, Joshua M;
- Zhang, Cheng-Zhong;
- Shalek, Alex K;
- Satija, Rahul;
- Trombetta, John J;
- Lu, Diana;
- Tallapragada, Naren;
- Tahirova, Narmin;
- Kim, Sora;
- Blumenstiel, Brendan;
- Sougnez, Carrie;
- Lowe, Alarice;
- Wong, Bang;
- Auclair, Daniel
Publication type:
Article
A Size-Selective Intracellular Delivery Platform.
Published in:
Small, 2016, v. 12, n. 42, p. 5873, doi. 10.1002/smll.201601155
By:
- Saung, May Tun;
- Sharei, Armon;
- Adalsteinsson, Viktor A.;
- Cho, Nahyun;
- Kamath, Tushar;
- Ruiz, Camilo;
- Kirkpatrick, Jesse;
- Patel, Nehal;
- Mino‐Kenudson, Mari;
- Thayer, Sarah P.;
- Langer, Robert;
- Jensen, Klavs F.;
- Liss, Andrew S.;
- Love, J. Christopher
Publication type:
Article
Proceedings of the fifth international Molecular Pathological Epidemiology (MPE) meeting.
Published in:
Cancer Causes & Control, 2022, v. 33, n. 8, p. 1107, doi. 10.1007/s10552-022-01594-7
By:
- Yao, Song;
- Campbell, Peter T.;
- Ugai, Tomotaka;
- Gierach, Gretchen;
- Abubakar, Mustapha;
- Adalsteinsson, Viktor;
- Almeida, Jonas;
- Brennan, Paul;
- Chanock, Stephen;
- Golub, Todd;
- Hanash, Samir;
- Harris, Curtis;
- Hathaway, Cassandra A.;
- Kelsey, Karl;
- Landi, Maria Teresa;
- Mahmood, Faisal;
- Newton, Christina;
- Quackenbush, John;
- Rodig, Scott;
- Schultz, Nikolaus
Publication type:
Article
Circulating Cell-Free DNA as Biomarker of Taxane Resistance in Metastatic Castration-Resistant Prostate Cancer.
Published in:
Cancers, 2021, v. 13, n. 16, p. 4055, doi. 10.3390/cancers13164055
By:
- Francini, Edoardo;
- Ou, Fang-Shu;
- Rhoades, Justin;
- Wolfe, Eric G.;
- O'Connor, Edward P.;
- Ha, Gavin;
- Gydush, Gregory;
- Kelleher, Kaitlin M.;
- Bhatt, Rupal S.;
- Balk, Steven P.;
- Sweeney, Christopher J.;
- Adalsteinsson, Viktor A.;
- Taplin, Mary-Ellen;
- Choudhury, Atish D.
Publication type:
Article
GENE-07. LIQUID BIOPSY DETECTION OF GENOMIC ALTERATIONS IN PEDIATRIC BRAIN TUMORS FROM CELL-FREE DNA IN PERIPHERAL BLOOD, CSF, AND URINE.
Published in:
Neuro-Oncology, 2019, v. 21, p. ii82, doi. 10.1093/neuonc/noz036.078
By:
- Pagès, Mélanie;
- Rotem, Denisse;
- Gydush, Gregory;
- Reed, Sarah;
- Rhoades, Justin;
- Ha, Gavin;
- Lo, Chris;
- Tracy, Adam;
- Jones, Robert;
- Becker, Sarah;
- Haller, Michaela;
- Chi, Susan;
- Kieran, Mark;
- Goumnerova, Liliana;
- Love, Christopher;
- Ligon, Keith;
- Wright, Karen;
- Adalsteinsson, Viktor;
- Beroukhim, Rameen;
- Bandopadhayay, Pratiti
Publication type:
Article
Pyrimidine-Dependent UV-Mediated Cross-Linking Magnifies Minor Genetic or Epigenetic Changes in Clinical Samples.
Published in:
Clinical Chemistry, 2024, v. 70, n. 9, p. 1151, doi. 10.1093/clinchem/hvae086
By:
- Yu, Fangyan;
- Ahmed, Farzana;
- Smilkou, Stavroula;
- Yasmin-Karim, Sayeda;
- Darbeheshti, Farzaneh;
- Markou, Athina;
- Bullock, Martyn;
- Boukovinas, Ioannis;
- Adalsteinsson, Viktor A;
- Lianidou, Evi;
- Makrigiorgos, G Mike
Publication type:
Article
MAESTRO-Pool Enables Highly Parallel and Specific Mutation-Enrichment Sequencing for Minimal Residual Disease Detection in Cohort Studies.
Published in:
Clinical Chemistry, 2024, v. 70, n. 2, p. 434, doi. 10.1093/clinchem/hvad203
By:
- Blewett, Timothy;
- Rhoades, Justin;
- Liu, Ruolin;
- Xiong, Kan;
- Sridhar, Sainetra;
- Crnjac, Andjela;
- Cheng, Ju;
- Lawless, Aleigha R;
- Frederick, Dennie T;
- Flaherty, Keith T;
- Makrigiorgos, Gerassimos Mike;
- Adalsteinsson, Viktor A
Publication type:
Article
Recent Developments in Mutation Enrichment and Detection Technologies.
Published in:
Clinical Chemistry, 2022, v. 68, n. 10, p. 1250, doi. 10.1093/clinchem/hvac093
By:
- Darbeheshti, Farzaneh;
- Fangyan Yu;
- Ahmed, Farzana;
- Adalsteinsson, Viktor A.;
- Makrigiorgos, G. Mike
Publication type:
Article
Multiplexed Elimination of Wild-Type DNA and High-Resolution Melting Prior to Targeted Resequencing of Liquid Biopsies.
Published in:
Clinical Chemistry, 2017, v. 63, n. 10, p. 1605, doi. 10.1373/clinchem.2017.272849
By:
- Ladas, Ioannis;
- Fitarelli-Kiehl, Mariana;
- Song, Chen;
- Adalsteinsson, Viktor A.;
- Parsons, Heather A.;
- Lin, Nancy U.;
- Wagle, Nikhil;
- Makrigiorgos, G. Mike
Publication type:
Article
Calibrating genomic and allelic coverage bias in single-cell sequencing.
Published in:
Nature Communications, 2015, v. 6, n. 4, p. 6822, doi. 10.1038/ncomms7822
By:
- Zhang, Cheng-Zhong;
- Adalsteinsson, Viktor A.;
- Francis, Joshua;
- Cornils, Hauke;
- Jung, Joonil;
- Maire, Cecile;
- Ligon, Keith L.;
- Meyerson, Matthew;
- Love, J. Christopher
Publication type:
Article
The PROMISE Study: A Nationwide Project for Predicting the Progression of Developing Myeloma in a High-Risk Screened Population.
Published in:
Clinical Lymphoma, Myeloma & Leukemia, 2019, v. 19, p. e310, doi. 10.1016/j.clml.2019.09.509
By:
- Cowan, Annie;
- Higgins, Allison;
- Fonseca, Rafael;
- Getz, Gad;
- Borrello, Ivan;
- Rebbeck, Timothy;
- Murray, David;
- Johnson, Jeremiah;
- Bustoros, Mark;
- Stewart, Chip;
- Zavidij, Oksana;
- Adalsteinsson, Viktor;
- Soule, Patrice;
- Hamilton, Courtney;
- Shayegh, Nader;
- Guimond, Kathleen;
- Berrios, Brianna;
- Su, Nang;
- Oluwadara, David;
- Marinac, Catherine R.
Publication type:
Article
Immunotherapy in Multiple Myeloma: Accelerating on the Path to the Patient.
Published in:
2019
By:
- Ghobrial, Irene;
- Cruz, Calixto Hernández;
- Garfall, Alfred;
- Shah, Nina;
- Munshi, Nikhil;
- Kaufman, Jonathan;
- Boise, Lawrence H.;
- Morgan, Gareth;
- Adalsteinsson, Viktor A.;
- Manier, Salomon;
- Pillai, Rathi;
- Malavasi, Fabio;
- Lonial, Sagar
Publication type:
journal article
Whole-exome Sequencing and Ultra Low Pass-whole Genome Sequencing of cfDNA and CTCs Enable a Comprehensive Mutational Landscape of Multiple Myeloma.
Published in:
Clinical Lymphoma, Myeloma & Leukemia, 2017, v. 17, p. e3, doi. 10.1016/j.clml.2017.03.005
By:
- Manier, Salomon;
- Park, Jihye;
- Freeman, Samuel;
- Capelletti, Marzia;
- Reed, Sarah;
- Gydush, Gregory;
- Salem, Karma;
- Huynh, Daisy;
- Glavey, Siobhan;
- Sacco, Antonio;
- Palumbo, Antonio;
- Garderet, Laurent;
- Kumar, Shaji;
- Roccaro, Aldo;
- Facon, Thierry;
- Van Allen, Eliezer;
- Love, Christopher;
- Getz, Gad;
- Adalsteinsson, Viktor;
- Ghobrial, Irene
Publication type:
Article
Duplex-Repair enables highly accurate sequencing, despite DNA damage.
Published in:
Nucleic Acids Research, 2022, v. 50, n. 1, p. e1, doi. 10.1093/nar/gkab855
By:
- Xiong, Kan;
- Shea, Douglas;
- Rhoades, Justin;
- Blewett, Timothy;
- Liu, Ruolin;
- Bae, Jin H;
- Nguyen, Erica;
- Makrigiorgos, G Mike;
- Golub, Todd R;
- Adalsteinsson, Viktor A
Publication type:
Article
NGS-based identification and tracing of microsatellite instability from minute amounts DNA using inter-Alu-PCR.
Published in:
Nucleic Acids Research, 2021, v. 49, n. 4, p. e24, doi. 10.1093/nar/gkaa1175
By:
- Yu, Fangyan;
- Leong, Ka Wai;
- Makrigiorgos, Alexander;
- Adalsteinsson, Viktor A;
- Ladas, Ioannis;
- Ng, Kimmie;
- Mamon, Harvey;
- Makrigiorgos, G Mike
Publication type:
Article
A nuclease-polymerase chain reaction enables amplification of probes used for capture-based DNA target enrichment.
Published in:
Nucleic Acids Research, 2019, v. 47, n. 22, p. e147, doi. 10.1093/nar/gkz870
By:
- Leong, Ka Wai;
- Yu, Fangyan;
- Adalsteinsson, Viktor A;
- Reed, Sarah;
- Gydush, Gregory;
- Ladas, Ioannis;
- Li, Jiang;
- Tantisira, Kelan G;
- Makrigiorgos, Gerassimos Mike
Publication type:
Article
Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00965-y
By:
- Adalsteinsson, Viktor A.;
- Ha, Gavin;
- Freeman, Samuel S.;
- Choudhury, Atish D.;
- Stover, Daniel G.;
- Parsons, Heather A.;
- Gydush, Gregory;
- Reed, Sarah C.;
- Rotem, Denisse;
- Rhoades, Justin;
- Loginov, Denis;
- Livitz, Dimitri;
- Rosebrock, Daniel;
- Leshchiner, Ignaty;
- Kim, Jaegil;
- Stewart, Chip;
- Rosenberg, Mara;
- Francis, Joshua M.;
- Cheng-Zhong Zhang;
- Cohen, Ofir
Publication type:
Article
Resistance to checkpoint blockade therapy through inactivation of antigen presentation.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01062-w
By:
- Sade-Feldman, Moshe;
- Jiao, Yunxin J.;
- Chen, Jonathan H.;
- Rooney, Michael S.;
- Barzily-Rokni, Michal;
- Eliane, Jean-Pierre;
- Bjorgaard, Stacey L.;
- Hammond, Marc R.;
- Vitzthum, Hans;
- Blackmon, Shauna M.;
- Frederick, Dennie T.;
- Hazar-Rethinam, Mehlika;
- Nadres, Brandon A.;
- Van Seventer, Emily E.;
- Shukla, Sachet A.;
- Yizhak, Keren;
- Ray, John P.;
- Rosebrock, Daniel;
- Livitz, Dimitri;
- Adalsteinsson, Viktor
Publication type:
Article
Functional analysis of single cells identifies a rare subset of circulating tumor cells with malignant traits.
Published in:
Integrative Biology, 2014, v. 6, n. 4, p. 388, doi. 10.1039/c3ib40264a
By:
- Xiaosai Yao;
- Choudhury, Atish D.;
- Yamanaka, Yvonne J.;
- Adalsteinsson, Viktor A.;
- Gierahn, Todd M.;
- Williamson, Christina A.;
- Lamb, Carla R.;
- Taplin, Mary-Ellen;
- Nakabayashi, Mari;
- Chabot, Matthew S.;
- Tiantian Li;
- Lee, Gwo-Shu M.;
- Boehm, Jesse S.;
- Kantoff, Philip W.;
- Hahn, William C.;
- Wittrup, K. Dane;
- Love, J. Christopher
Publication type:
Article
Single cells from human primary colorectal tumors exhibit polyfunctional heterogeneity in secretions of ELR+ CXC chemokines.
Published in:
Integrative Biology, 2013, v. 5, n. 10, p. 1272, doi. 10.1039/c3ib40059j
By:
- Adalsteinsson, Viktor A.;
- Tahirova, Narmin;
- Tallapragada, Naren;
- Yao, Xiaosai;
- Campion, Liam;
- Angelini, Alessandro;
- Douce, Thomas B.;
- Huang, Cindy;
- Bowman, Brittany;
- Williamson, Christina A.;
- Kwon, Douglas S.;
- Wittrup, K. Dane;
- Love, J. Christopher
Publication type:
Article
Implementation of a prostate cancer‐specific targeted sequencing panel for credentialing of patient‐derived cell lines and genomic characterization of patient samples.
Published in:
Prostate, 2022, v. 82, n. 5, p. 584, doi. 10.1002/pros.24305
By:
- Stover, Elizabeth H.;
- Oh, Coyin;
- Keskula, Paula;
- Choudhury, Atish D.;
- Tseng, Yuen‐Yi;
- Adalsteinsson, Viktor A.;
- Lohr, Jens G.;
- Thorner, Aaron R.;
- Ducar, Matthew;
- Kryukov, Gregory V.;
- Ha, Gavin;
- Rosenberg, Mara;
- Freeman, Samuel S.;
- Zhang, Zhenwei;
- Wu, Xiaoyun;
- Van Allen, Eliezer M.;
- Takeda, David Y.;
- Loda, Massimo;
- Wu, Chin‐Lee;
- Taplin, Mary‐Ellen
Publication type:
Article
Liquid biopsy detection of genomic alterations in pediatric brain tumors from cell-free DNA in peripheral blood, CSF, and urine.
Published in:
Neuro-Oncology, 2022, v. 24, n. 8, p. 1352, doi. 10.1093/neuonc/noab299
By:
- Pagès, Mélanie;
- Rotem, Denisse;
- Gydush, Gregory;
- Reed, Sarah;
- Rhoades, Justin;
- Ha, Gavin;
- Lo, Christopher;
- Fleharty, Mark;
- Duran, Madeleine;
- Jones, Robert;
- Becker, Sarah;
- Haller, Michaela;
- Sinai, Claire E;
- Goumnerova, Liliana;
- Golub, Todd R;
- Love, J Christopher;
- Ligon, Keith L;
- Wright, Karen D;
- Adalsteinsson, Viktor A;
- Beroukhim, Rameen
Publication type:
Article
Technological considerations for genome-guided diagnosis and management of cancer.
Published in:
Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0370-4
By:
- Lennon, Niall J.;
- Adalsteinsson, Viktor A.;
- Gabriel, Stacey B.
Publication type:
Article

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