Works matching AU van Loo, Peter

Results: 64
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    Erratum: Gene prioritization through genomic data fusion.

    Published in:
    2006
    By:
    • Aerts, Stein;
    • Lambrechts, Diether;
    • Maity, Sunit;
    • Van Loo, Peter;
    • Coessens, Bert;
    • De Smet, Frederik;
    • Tranchevent, Leon-Charles;
    • De Moor, Bart;
    • Marynen, Peter;
    • Hassan, Bassem;
    • Carmeliet, Peter;
    • Moreau, Yves
    Publication type:
    Correction Notice
    3

    Gene prioritization through genomic data fusion.

    Published in:
    Nature Biotechnology, 2006, v. 24, n. 5, p. 537, doi. 10.1038/nbt1203
    By:
    • Aerts, Stein;
    • Lambrechts, Diether;
    • Maity, Sunit;
    • Van Loo, Peter;
    • Coessens, Bert;
    • De Smet, Frederik;
    • Tranchevent, Leon-Charles;
    • De Moor, Bart;
    • Marynen, Peter;
    • Hassan, Bassem;
    • Carmeliet, Peter;
    • Moreau, Yves
    Publication type:
    Article
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    Promises and challenges of adoptive T-cell therapies for solid tumours.

    Published in:
    2021
    By:
    • Morotti, Matteo;
    • Albukhari, Ashwag;
    • Alsaadi, Abdulkhaliq;
    • Artibani, Mara;
    • Brenton, James D.;
    • Curbishley, Stuart M.;
    • Dong, Tao;
    • Dustin, Michael L.;
    • Hu, Zhiyuan;
    • McGranahan, Nicholas;
    • Miller, Martin L.;
    • Santana-Gonzalez, Laura;
    • Seymour, Leonard W.;
    • Shi, Tingyan;
    • Van Loo, Peter;
    • Yau, Christopher;
    • White, Helen;
    • Wietek, Nina;
    • Church, David N.;
    • Wedge, David C.
    Publication type:
    journal article
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    Single-cell paired-end genome sequencing reveals structural variation per cell cycle.

    Published in:
    Nucleic Acids Research, 2013, v. 41, n. 12, p. 6119, doi. 10.1093/nar/gkt345
    By:
    • Voet, Thierry;
    • Kumar, Parveen;
    • Van Loo, Peter;
    • Cooke, Susanna L.;
    • Marshall, John;
    • Lin, Meng-Lay;
    • Zamani Esteki, Masoud;
    • Van der Aa, Niels;
    • Mateiu, Ligia;
    • McBride, David J.;
    • Bignell, Graham R.;
    • McLaren, Stuart;
    • Teague, Jon;
    • Butler, Adam;
    • Raine, Keiran;
    • Stebbings, Lucy A.;
    • Quail, Michael A.;
    • D’Hooghe, Thomas;
    • Moreau, Yves;
    • Futreal, P. Andrew
    Publication type:
    Article
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    ORegAnno: an open-access community-driven resource for regulatory annotation.

    Published in:
    Nucleic Acids Research, 2008, v. 36, p. D107
    By:
    • Griffith, Obi L.;
    • Montgomery, Stephen B.;
    • Bernier, Bridget;
    • Chu, Bryan;
    • Kasaian, Katayoon;
    • Aerts, Stein;
    • Mahony, Shaun;
    • Sleumer, Monica C.;
    • Bilenky, Mikhail;
    • Haeussler, Maximilian;
    • Griffith, Malachi;
    • Gallo, Steven M.;
    • Giardine, Belinda;
    • Hooghe, Bart;
    • Van Loo, Peter;
    • Blanco, Enrique;
    • Ticoll, Amy;
    • Lithwick, Stuart;
    • Portales-Casamar, Elodie;
    • Donaldson, Ian J.
    Publication type:
    Article
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    Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing.

    Published in:
    Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1109-7
    By:
    • Demeulemeester, Jonas;
    • Kumar, Parveen;
    • Møller, Elen K.;
    • Nord, Silje;
    • Wedge, David C.;
    • Peterson, April;
    • Mathiesen, Randi R.;
    • Fjelldal, Renathe;
    • Esteki, Masoud Zamani;
    • Theunis, Koen;
    • Fernandez Gallardo, Elia;
    • Grundstad, A. Jason;
    • Borgen, Elin;
    • Baumbusch, Lars O.;
    • Børresen-Dale, Anne-Lise;
    • White, Kevin P.;
    • Kristensen, Vessela N.;
    • Van Loo, Peter;
    • Voet, Thierry;
    • Naume, Bjørn
    Publication type:
    Article
    19

    Whole exome sequencing of adenoid cystic carcinoma.

    Published in:
    2013
    By:
    • Stephens, Philip J;
    • Davies, Helen R;
    • Mitani, Yoshitsugu;
    • Van Loo, Peter;
    • Shlien, Adam;
    • Tarpey, Patrick S;
    • Papaemmanuil, Elli;
    • Cheverton, Angela;
    • Bignell, Graham R;
    • Butler, Adam P;
    • Gamble, John;
    • Gamble, Stephen;
    • Hardy, Claire;
    • Hinton, Jonathan;
    • Jia, Mingming;
    • Jayakumar, Alagu;
    • Jones, David;
    • Latimer, Calli;
    • McLaren, Stuart;
    • McBride, David J
    Publication type:
    journal article
    20

    Whole exome sequencing of adenoid cystic carcinoma.

    Published in:
    Journal of Clinical Investigation, 2013, v. 123, n. 7, p. 2965, doi. 10.1172/JCI67201
    By:
    • Stephens, Philip J.;
    • Davies, Helen R.;
    • Mitani, Yoshitsugu;
    • Van Loo, Peter;
    • Shlien, Adam;
    • Tarpey, Patrick S.;
    • Papaemmanuil, Elli;
    • Cheverton, Angela;
    • Bignell, Graham R.;
    • Butler, Adam P.;
    • Gamble, John;
    • Gamble, Stephen;
    • Hardy, Claire;
    • Hinton, Jonathan;
    • Mingming Jia;
    • Jayakumar, Alagu;
    • Jones, David;
    • Latimer, Calli;
    • McLaren, Stuart;
    • McBride, David J.
    Publication type:
    Article
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    Recurrent breakpoints in 14q32.13/ TCL1A region in mature B-cell neoplasms with villous lymphocytes.

    Published in:
    Leukemia & Lymphoma, 2012, v. 53, n. 12, p. 2449, doi. 10.3109/10428194.2012.690098
    By:
    • Urbankova, Helena;
    • Baens, Mathijs;
    • Michaux, Lucienne;
    • Tousseyn, Thomas;
    • Rack, Katrina;
    • Katrincsakova, Beata;
    • Ferreiro, Julio Finalet;
    • van Loo, Peter;
    • de Kelver, Wim;
    • Dierickx, Daan;
    • Demuynck, Hilde;
    • Delannoy, André;
    • Verschuere, Johan;
    • Jarošová, Marie;
    • de Wolf-Peeters, Chris;
    • Vandenberghe, Peter;
    • Wlodarska, Iwona
    Publication type:
    Article
    24

    Corrigendum: Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue.

    Published in:
    Nature Genetics, 2015, v. 47, n. 6, p. 689, doi. 10.1038/ng0615-689b
    By:
    • Cooper, Colin S;
    • Eeles, Rosalind;
    • Wedge, David C;
    • Van Loo, Peter;
    • Gundem, Gunes;
    • Alexandrov, Ludmil B;
    • Kremeyer, Barbara;
    • Butler, Adam;
    • Lynch, Andrew G;
    • Camacho, Niedzica;
    • Massie, Charlie E;
    • Kay, Jonathan;
    • Luxton, Hayley J;
    • Edwards, Sandra;
    • Kote-Jarai, Zsofia;
    • Dennis, Nening;
    • Merson, Sue;
    • Leongamornlert, Daniel;
    • Zamora, Jorge;
    • Corbishley, Cathy
    Publication type:
    Article
    25

    RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia.

    Published in:
    Nature Genetics, 2014, v. 46, n. 2, p. 116, doi. 10.1038/ng.2874
    By:
    • Papaemmanuil, Elli;
    • Rapado, Inmaculada;
    • Li, Yilong;
    • Potter, Nicola E;
    • Wedge, David C;
    • Tubio, Jose;
    • Alexandrov, Ludmil B;
    • Van Loo, Peter;
    • Cooke, Susanna L;
    • Marshall, John;
    • Martincorena, Inigo;
    • Hinton, Jonathan;
    • Gundem, Gunes;
    • van Delft, Frederik W;
    • Nik-Zainal, Serena;
    • Jones, David R;
    • Ramakrishna, Manasa;
    • Titley, Ian;
    • Stebbings, Lucy;
    • Leroy, Catherine
    Publication type:
    Article
    26

    Recurrent PTPRB and PLCG1 mutations in angiosarcoma.

    Published in:
    Nature Genetics, 2014, v. 46, n. 4, p. 376, doi. 10.1038/ng.2921
    By:
    • Behjati, Sam;
    • Tarpey, Patrick S;
    • Sheldon, Helen;
    • Martincorena, Inigo;
    • Van Loo, Peter;
    • Gundem, Gunes;
    • Wedge, David C;
    • Ramakrishna, Manasa;
    • Cooke, Susanna L;
    • Pillay, Nischalan;
    • Vollan, Hans Kristian M;
    • Papaemmanuil, Elli;
    • Koss, Hans;
    • Bunney, Tom D;
    • Hardy, Claire;
    • Joseph, Olivia R;
    • Martin, Sancha;
    • Mudie, Laura;
    • Butler, Adam;
    • Teague, Jon W
    Publication type:
    Article
    27

    Corrigendum: Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone.

    Published in:
    Nature Genetics, 2014, v. 46, n. 3, p. 316, doi. 10.1038/ng0314-316
    By:
    • Behjati, Sam;
    • Tarpey, Patrick S;
    • Presneau, Nadège;
    • Scheipl, Susanne;
    • Pillay, Nischalan;
    • Van Loo, Peter;
    • Wedge, David C;
    • Cooke, Susanna L;
    • Gundem, Gunes;
    • Davies, Helen;
    • Nik-Zainal, Serena;
    • Martin, Sancha;
    • McLaren, Stuart;
    • Goodie, Victoria;
    • Robinson, Ben;
    • Butler, Adam;
    • Teague, Jon W;
    • Halai, Dina;
    • Khatri, Bhavisha;
    • Myklebost, Ola
    Publication type:
    Article
    28

    Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone.

    Published in:
    Nature Genetics, 2013, v. 45, n. 12, p. 1479, doi. 10.1038/ng.2814
    By:
    • Behjati, Sam;
    • Tarpey, Patrick S;
    • Presneau, Nadège;
    • Scheipl, Susanne;
    • Pillay, Nischalan;
    • Van Loo, Peter;
    • Wedge, David C;
    • Cooke, Susanna L;
    • Gundem, Gunes;
    • Davies, Helen;
    • Nik-Zainal, Serena;
    • Martin, Sancha;
    • McLaren, Stuart;
    • Goodie, Victoria;
    • Robinson, Ben;
    • Butler, Adam;
    • Teague, Jon W;
    • Halai, Dina;
    • Khatri, Bhavisha;
    • Myklebost, Ola
    Publication type:
    Article
    29

    Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma.

    Published in:
    Nature Genetics, 2013, v. 45, n. 8, p. 923, doi. 10.1038/ng.2668
    By:
    • Tarpey, Patrick S;
    • Behjati, Sam;
    • Cooke, Susanna L;
    • Van Loo, Peter;
    • Wedge, David C;
    • Pillay, Nischalan;
    • Marshall, John;
    • O'Meara, Sarah;
    • Davies, Helen;
    • Nik-Zainal, Serena;
    • Beare, David;
    • Butler, Adam;
    • Gamble, John;
    • Hardy, Claire;
    • Hinton, Jonathon;
    • Jia, Ming Ming;
    • Jayakumar, Alagu;
    • Jones, David;
    • Latimer, Calli;
    • Maddison, Mark
    Publication type:
    Article
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    31

    MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution.

    Published in:
    Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02794-9
    By:
    • Kaufmann, Tom L.;
    • Petkovic, Marina;
    • Watkins, Thomas B. K.;
    • Colliver, Emma C.;
    • Laskina, Sofya;
    • Thapa, Nisha;
    • Minussi, Darlan C.;
    • Navin, Nicholas;
    • Swanton, Charles;
    • Van Loo, Peter;
    • Haase, Kerstin;
    • Tarabichi, Maxime;
    • Schwarz, Roland F.
    Publication type:
    Article
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    Mutational signatures of ionizing radiation in second malignancies.

    Published in:
    Nature Communications, 2016, v. 7, n. 9, p. 12605, doi. 10.1038/ncomms12605
    By:
    • Behjati, Sam;
    • Gundem, Gunes;
    • Wedge, David C.;
    • Roberts, Nicola D.;
    • Tarpey, Patrick S.;
    • Cooke, Susanna L.;
    • Van Loo, Peter;
    • Alexandrov, Ludmil B.;
    • Ramakrishna, Manasa;
    • Davies, Helen;
    • Nik-Zainal, Serena;
    • Hardy, Claire;
    • Latimer, Calli;
    • Raine, Keiran M.;
    • Stebbings, Lucy;
    • Menzies, Andy;
    • Jones, David;
    • Shepherd, Rebecca;
    • Butler, Adam P.;
    • Teague, Jon W.
    Publication type:
    Article
    34

    Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer.

    Published in:
    Nature Communications, 2015, v. 6, n. 4, p. 6605, doi. 10.1038/ncomms7605
    By:
    • Hong, Matthew K.H.;
    • Macintyre, Geoff;
    • Wedge, David C.;
    • Van Loo, Peter;
    • Patel, Keval;
    • Lunke, Sebastian;
    • Alexandrov, Ludmil B.;
    • Sloggett, Clare;
    • Cmero, Marek;
    • Marass, Francesco;
    • Tsui, Dana;
    • Mangiola, Stefano;
    • Lonie, Andrew;
    • Naeem, Haroon;
    • Sapre, Nikhil;
    • Phal, Pramit M.;
    • Kurganovs, Natalie;
    • Chin, Xiaowen;
    • Kerger, Michael;
    • Warren, Anne Y.
    Publication type:
    Article
    35

    Heterogeneity of genomic evolution and mutational profiles in multiple myeloma.

    Published in:
    Nature Communications, 2014, v. 5, n. 1, p. 2997, doi. 10.1038/ncomms3997
    By:
    • Bolli, Niccolo;
    • Avet-Loiseau, Hervé;
    • Wedge, David C.;
    • Van Loo, Peter;
    • Alexandrov, Ludmil B.;
    • Martincorena, Inigo;
    • Dawson, Kevin J.;
    • Iorio, Francesco;
    • Nik-Zainal, Serena;
    • Bignell, Graham R.;
    • Hinton, Jonathan W.;
    • Li, Yilong;
    • Tubio, Jose M.C.;
    • McLaren, Stuart;
    • O' Meara, Sarah;
    • Butler, Adam P.;
    • Teague, Jon W.;
    • Mudie, Laura;
    • Anderson, Elizabeth;
    • Rashid, Naim
    Publication type:
    Article
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    Time series analysis of neoadjuvant chemotherapy and bevacizumab-treated breast carcinomas reveals a systemic shift in genomic aberrations.

    Published in:
    Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0601-y
    By:
    • Höglander, Elen Kristine;
    • Nord, Silje;
    • Wedge, David C.;
    • Lingjærde, Ole Christian;
    • Silwal-Pandit, Laxmi;
    • Gythfeldt, Hedda vdL;
    • Vollan, Hans Kristian Moen;
    • Fleischer, Thomas;
    • Krohn, Marit;
    • Schlitchting, Ellen;
    • Borgen, Elin;
    • Garred, Øystein;
    • Holmen, Marit M.;
    • Wist, Erik;
    • Naume, Bjørn;
    • Van Loo, Peter;
    • Børresen-Dale, Anne-Lise;
    • Engebraaten, Olav;
    • Kristensen, Vessela
    Publication type:
    Article
    38

    Next-generation sequencing of disseminated tumor cells.

    Published in:
    Frontiers in Oncology, 2013, v. 3, p. 1, doi. 10.3389/fonc.2013.00320
    By:
    • Møller, Elen K.;
    • Kumar, Parveen;
    • Voet, Thierry;
    • Peterson, April;
    • Loo, Peter Van;
    • Mathiesen, Randi R.;
    • Fjelldal, Renathe;
    • Grundstad, Jason;
    • Borgen, Elin;
    • Baumbusch, Lars O.;
    • Naume, Bjørn;
    • Børresen-Dale, Anne-Lise;
    • White, Kevin P.;
    • Nord, Silje;
    • Kristensen, Vessela N.
    Publication type:
    Article
    39

    Recurrent rearrangements of FOS and FOSB define osteoblastoma.

    Published in:
    Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-04530-z
    By:
    • Fittall, Matthew W.;
    • Mifsud, William;
    • Pillay, Nischalan;
    • Hongtao Ye;
    • Strobl, Anna-Christina;
    • Verfaillie, Annelien;
    • Demeulemeester, Jonas;
    • Lei Zhang;
    • Berisha, Fitim;
    • Tarabichi, Maxime;
    • Young, Matthew D.;
    • Miranda, Elena;
    • Tarpey, Patrick S.;
    • Tirabosco, Roberto;
    • Amary, Fernanda;
    • Grigoriadis, Agamemnon E.;
    • Stratton, Michael R.;
    • Van Loo, Peter;
    • Antonescu, Cristina R.;
    • Campbell, Peter J.
    Publication type:
    Article
    40

    Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.

    Published in:
    Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01355-0
    By:
    • Cheng, Jiqiu;
    • Demeulemeester, Jonas;
    • Wedge, David C.;
    • Vollan, Hans Kristian M.;
    • Pitt, Jason J.;
    • Russnes, Hege G.;
    • Pandey, Bina P.;
    • Nilsen, Gro;
    • Nord, Silje;
    • Bignell, Graham R.;
    • White, Kevin P.;
    • Børresen-Dale, Anne-Lise;
    • Campbell, Peter J.;
    • Kristensen, Vessela N.;
    • Stratton, Michael R.;
    • Lingjærde, Ole Christian;
    • Moreau, Yves;
    • Van Loo, Peter
    Publication type:
    Article
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    The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models.

    Published in:
    Genome Biology, 2013, v. 14, n. 10, p. 3, doi. 10.1186/gb-2013-14-10-r113
    By:
    • Yen, Jennifer;
    • White, Richard M.;
    • Wedge, David C.;
    • Loo, Peter Van;
    • Ridder, Jeroen de;
    • Capper, Amy;
    • Richardson, Jennifer;
    • Jones, David;
    • Raine, Keiran;
    • Watson, Ian R.;
    • Chang-Jiun Wu;
    • Jiqiu Cheng;
    • Martincorena, Iñigo;
    • Nik-Zainal, Serena;
    • Mudie, Laura;
    • Moreau, Yves;
    • Marshall, John;
    • Ramakrishna, Manasa;
    • Tarpey, Patrick;
    • Shlien, Adam
    Publication type:
    Article
    43

    Subclonal diversification of primary breast cancer revealed by multiregion sequencing.

    Published in:
    Nature Medicine, 2015, v. 21, n. 7, p. 751, doi. 10.1038/nm.3886
    By:
    • Yates, Lucy R;
    • Gerstung, Moritz;
    • Knappskog, Stian;
    • Desmedt, Christine;
    • Gundem, Gunes;
    • Van Loo, Peter;
    • Aas, Turid;
    • Alexandrov, Ludmil B;
    • Larsimont, Denis;
    • Davies, Helen;
    • Li, Yilong;
    • Ju, Young Seok;
    • Ramakrishna, Manasa;
    • Haugland, Hans Kristian;
    • Lilleng, Peer Kaare;
    • Nik-Zainal, Serena;
    • McLaren, Stuart;
    • Butler, Adam;
    • Martin, Sancha;
    • Glodzik, Dominic
    Publication type:
    Article
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    Ethanol exposure increases mutation rate through error-prone polymerases.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17447-3
    By:
    • Voordeckers, Karin;
    • Colding, Camilla;
    • Grasso, Lavinia;
    • Pardo, Benjamin;
    • Hoes, Lore;
    • Kominek, Jacek;
    • Gielens, Kim;
    • Dekoster, Kaat;
    • Gordon, Jonathan;
    • Van der Zande, Elisa;
    • Bircham, Peter;
    • Swings, Toon;
    • Michiels, Jan;
    • Van Loo, Peter;
    • Nuyts, Sandra;
    • Pasero, Philippe;
    • Lisby, Michael;
    • Verstrepen, Kevin J.
    Publication type:
    Article
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