Found: 25
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SwarmDock and the Use of Normal Modes in Protein-Protein Docking.
- Published in:
- International Journal of Molecular Sciences, 2010, v. 11, n. 10, p. 3623, doi. 10.3390/ijms11103623
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- Article
Inferring the microscopic surface energy of protein-protein interfaces from mutation data.
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- Proteins, 2015, v. 83, n. 4, p. 640, doi. 10.1002/prot.24761
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- Article
Blind prediction of interfacial water positions in CAPRI.
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- Proteins, 2014, v. 82, n. 4, p. 620, doi. 10.1002/prot.24439
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- Article
Expanding the frontiers of protein-protein modeling: From docking and scoring to binding affinity predictions and other challenges.
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- Proteins, 2013, v. 81, n. 12, p. 2192, doi. 10.1002/prot.24387
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- Publication type:
- Article
A Markov-chain model description of binding funnels to enhance the ranking of docked solutions.
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- Proteins, 2013, v. 81, n. 12, p. 2143, doi. 10.1002/prot.24369
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- Publication type:
- Article
Detection and refinement of encounter complexes for protein-protein docking: Taking account of macromolecular crowding.
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- Proteins, 2010, v. 78, n. 15, p. 3189, doi. 10.1002/prot.22770
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- Publication type:
- Article
The structural basis for enhancer-dependent assembly and activation of the AAA transcriptional activator NorR.
- Published in:
- Molecular Microbiology, 2015, v. 95, n. 1, p. 17, doi. 10.1111/mmi.12844
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- Article
The scoring of poses in protein-protein docking: current capabilities and future directions.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-286
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- Article
Bridging the gaps: atomic simulation of macromolecular environment brings together protein docking, interaction kinetics and the crowding effects.
- Published in:
- 2010
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- Publication type:
- Abstract
Modeling Structural Constraints on Protein Evolution via Side-Chain Conformational States.
- Published in:
- Molecular Biology & Evolution, 2019, v. 36, n. 9, p. 2086, doi. 10.1093/molbev/msz122
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- Publication type:
- Article
Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003216
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- Article
Kinetic Rate Constant Prediction Supports the Conformational Selection Mechanism of Protein Binding.
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- PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002351
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- Article
AbLang: an antibody language model for completing antibody sequences.
- Published in:
- Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac046
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- Publication type:
- Article
A structure-based benchmark for protein-protein binding affinity.
- Published in:
- Protein Science: A Publication of the Protein Society, 2011, v. 20, n. 3, p. 482, doi. 10.1002/pro.580
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- Publication type:
- Article
A systematic analysis of scoring functions in rigid-body protein docking: The delicate balance between the predictive rate improvement and the risk of overtraining.
- Published in:
- Proteins, 2017, v. 85, n. 7, p. 1287, doi. 10.1002/prot.25289
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- Publication type:
- Article
pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.
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- Proteins, 2017, v. 85, n. 3, p. 487, doi. 10.1002/prot.25184
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- Publication type:
- Article
A machine learning approach for ranking clusters of docked protein-protein complexes by pairwise cluster comparison.
- Published in:
- Proteins, 2017, v. 85, n. 3, p. 528, doi. 10.1002/prot.25218
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- Publication type:
- Article
SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation.
- Published in:
- Bioinformatics, 2019, v. 35, n. 3, p. 462, doi. 10.1093/bioinformatics/bty635
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- Publication type:
- Article
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.
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- Bioinformatics, 2017, v. 33, n. 12, p. 1806, doi. 10.1093/bioinformatics/btx068
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- Article
Comment on ‘protein–protein binding affinity prediction from amino acid sequence’.
- Published in:
- Bioinformatics, 2015, v. 31, n. 4, p. 614, doi. 10.1093/bioinformatics/btu682
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- Publication type:
- Article
CCharPPI web server: computational characterization of protein–protein interactions from structure.
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- Bioinformatics, 2015, v. 31, n. 1, p. 123, doi. 10.1093/bioinformatics/btu594
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- Publication type:
- Article
SwarmDock: a server for flexible protein–protein docking.
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- Bioinformatics, 2013, v. 29, n. 6, p. 807, doi. 10.1093/bioinformatics/btt038
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- Publication type:
- Article
SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models.
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- Bioinformatics, 2012, v. 28, n. 20, p. 2600, doi. 10.1093/bioinformatics/bts489
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- Publication type:
- Article
Protein–protein binding affinity prediction on a diverse set of structures.
- Published in:
- Bioinformatics, 2011, v. 27, n. 21, p. 3002, doi. 10.1093/bioinformatics/btr513
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- Publication type:
- Article
KA-Search, a method for rapid and exhaustive sequence identity search of known antibodies.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-38108-7
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- Publication type:
- Article