Works matching AU Schnable, Patrick S.

Results: 132

Genetics of canopy architecture dynamics in photoperiod‐sensitive and photoperiod‐insensitive sorghum.

Published in:

Plant Phenome Journal, 2024, v. 7, n. 1, p. 1, doi. 10.1002/ppj2.20092

By:

Panelo, Juan S.;
Bao, Yin;
Tang, Lie;
Schnable, Patrick S.;
Salas‐Fernandez, Maria G.

Publication type:

Article

ALLMAPS: robust scaffold ordering based on multiple maps.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 49, doi. 10.1186/s13059-014-0573-1

By:

Haibao Tang;
Xingtan Zhang;
Chenyong Miao;
Jisen Zhang;
Ray Ming;
Schnable, James C.;
Schnable, Patrick S.;
Lyons, Eric;
Jianguo Lu

Publication type:

Article

Genome-wide discovery and characterization of maize long non-coding RNAs.

Published in:

Genome Biology, 2014, v. 15, n. 2, p. 1, doi. 10.1186/gb-2014-15-2-r40

By:

Lin Li;
Eichten, Steven R.;
Shimizu, Rena;
Petsch, Katherine;
Cheng-Ting Yeh;
Wei Wu;
Chettoor, Antony M.;
Givan, Scott A.;
Cole, Rex A.;
Fowler, John E.;
Evans, Matthew M. S.;
Scanlon, Michael J.;
Jianming Yu;
Schnable, Patrick S.;
Timmermans, Marja C. P.;
Springer, Nathan M.;
Muehlbauer, Gary J.

Publication type:

Article

Temperature gradient capillary electrophoresis (TGCE)–a tool for the high-throughput discovery and mapping of SNPs and IDPs.

Published in:

Theoretical & Applied Genetics, 2005, v. 111, n. 2, p. 218, doi. 10.1007/s00122-005-1997-5

By:

An-Ping Hsia;
Tsui-Jung Wen;
Chen, Hsin D.;
Zhaowei Liu;
Yandeau-Nelson, Marna D.;
Yanling Wei;
Ling Guo;
Schnable, Patrick S.

Publication type:

Article

Leaf Angle eXtractor: A high‐throughput image processing framework for leaf angle measurements in maize and sorghum.

Published in:

Applications in Plant Sciences, 2020, v. 8, n. 8, p. 1, doi. 10.1002/aps3.11385

By:

Kenchanmane Raju, Sunil K.;
Adkins, Miles;
Enersen, Alex;
Santana de Carvalho, Daniel;
Studer, Anthony J.;
Ganapathysubramanian, Baskar;
Schnable, Patrick S.;
Schnable, James C.

Publication type:

Article

Construction of a dense genetic map of the Malus fusca fire blight resistant accession MAL0045 using tunable genotyping-by-sequencing SNPs and microsatellites.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-73393-6

By:

Emeriewen, Ofere Francis;
Richter, Klaus;
Berner, Thomas;
Keilwagen, Jens;
Schnable, Patrick S.;
Malnoy, Mickael;
Peil, Andreas

Publication type:

Article

Maize Leaf Appearance Rates: A Synthesis From the United States Corn Belt.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.872738

By:

dos Santos, Caio L.;
Abendroth, Lori J.;
Coulter, Jeffrey A.;
Nafziger, Emerson D.;
Suyker, Andy;
Jianming Yu;
Schnable, Patrick S.;
Archontoulis, Sotirios V.

Publication type:

Article

Trajectories of Homoeolog-Specific Expression in Allotetraploid Tragopogon castellanus Populations of Independent Origins.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.679047

By:

Boatwright, J. Lucas;
Yeh, Cheng-Ting;
Hu, Heng-Cheng;
Susanna, Alfonso;
Soltis, Douglas E.;
Soltis, Pamela S.;
Schnable, Patrick S.;
Barbazuk, William B.

Publication type:

Article

NEXT-GENERATION SEQUENCING AND GENOME EVOLUTION IN ALLOPOLYPLOIDS.

Published in:

American Journal of Botany, 2012, v. 99, n. 2, p. 372, doi. 10.3732/ajb.1100395

By:

Buggs, Richard J. A.;
Renny-Byfield, Simon;
Chester, Michael;
Jordon-Thaden, Ingrid E.;
Viccini, Lyderson Facio;
Chamala, Srikar;
Leitch, Andrew R.;
Schnable, Patrick S.;
Barbazuk, W. Bradley;
Soltis, Pamela S.;
Soltis, Douglas E.

Publication type:

Article

Field‐based robotic leaf angle detection and characterization of maize plants using stereo vision and deep convolutional neural networks.

Published in:

Journal of Field Robotics, 2023, v. 40, n. 5, p. 1034, doi. 10.1002/rob.22166

By:

Xiang, Lirong;
Gai, Jingyao;
Bao, Yin;
Yu, Jianming;
Schnable, Patrick S.;
Tang, Lie

Publication type:

Article

Field‐based robotic phenotyping of sorghum plant architecture using stereo vision.

Published in:

Journal of Field Robotics, 2019, v. 36, n. 2, p. 397, doi. 10.1002/rob.21830

By:

Bao, Yin;
Tang, Lie;
Breitzman, Matthew W.;
Salas Fernandez, Maria G.;
Schnable, Patrick S.

Publication type:

Article

Identification and utilization of genetic determinants of trait measurement errors in image-based, high-throughput phenotyping.

Published in:

Plant Cell, 2021, v. 33, n. 8, p. 2562, doi. 10.1093/plcell/koab134

By:

Zhou, Yan;
Kusmec, Aaron;
Mirnezami, Seyed Vahid;
Attigala, Lakshmi;
Srinivasan, Srikant;
Jubery, Talukder Z.;
Schnable, James C.;
Salas-Fernandez, Maria G.;
Ganapathysubramanian, Baskar;
Schnable, Patrick S.

Publication type:

Article

Nonsyntenic Genes Drive Highly Dynamic Complementation of Gene Expression in Maize Hybrids.

Published in:

Plant Cell, 2014, v. 26, n. 10, p. 3939, doi. 10.1105/tpc.114.130948

By:

Paschold, Anja;
Larson, Nick B.;
Marcon, Caroline;
Schnable, James C.;
Yeh, Cheng-Ting;
Lanz, Christa;
Nettleton, Dan;
Piepho, Hans-Peter;
Schnable, Patrick S.;
Hochholdinger, Frank

Publication type:

Article

Ontogeny of the Maize Shoot Apical Meristem.

Published in:

Plant Cell, 2012, v. 24, n. 8, p. 3219, doi. 10.1105/tpc.112.099614

By:

Takacs, Elizabeth M.;
Li, Jie;
Du, Chuanlong;
Ponnala, Lalit;
Janick-Buckner, Diane;
Yu, Jianming;
Muehlbauer, Gary J.;
Schnable, Patrick S.;
Timmermans, Marja C.P.;
Sun, Qi;
Nettleton, Dan;
Scanlon, Michael J.

Publication type:

Article

Parent-of-Origin Effects on Gene Expression and DNA Methylation in the Maize Endosperm.

Published in:

Plant Cell, 2011, v. 23, n. 12, p. 4221, doi. 10.1105/tpc.111.092668

By:

Waters, Amanda J.;
Makarevitch, Irina;
Eichten, Steve R.;
Swanson-Wagner, Ruth A.;
Yeh, Cheng-Ting;
Xu, Wayne;
Schnable, Patrick S.;
Vaughn, Matthew W.;
Gehring, Mary;
Springer, Nathan M.

Publication type:

Article

Harnessing Phenotypic Plasticity to Improve Maize Yields.

Published in:

Frontiers in Plant Science, 2018, p. N.PAG, doi. 10.3389/fpls.2018.01377

By:

Kusmec, Aaron;
de Leon, Natalia;
Schnable, Patrick S.

Publication type:

Article

Exploiting the Genomic Diversity of Rice (Oryza sativa L.): SNP-Typing in 11 Early-Backcross Introgression-Breeding Populations.

Published in:

Frontiers in Plant Science, 2018, p. 1, doi. 10.3389/fpls.2018.00849

By:

Ali, Jauhar;
Aslam, Umair M.;
Tariq, Rida;
Murugaiyan, Varunseelan;
Schnable, Patrick S.;
Li, Delin;
Marfori-Nazarea, Corinne M.;
Hernandez, Jose E.;
Arif, Muhammad;
Jianlong Xu;
Zhikang Li

Publication type:

Article

ZmPTOX1, a plastid terminal oxidase, contributes to redox homeostasis during seed development and germination.

Published in:

Plant Journal, 2024, v. 119, n. 1, p. 460, doi. 10.1111/tpj.16776

By:

Peng, Yixuan;
Liang, Zhi;
Cai, Minghao;
Wang, Jie;
Li, Delin;
Chen, Quanquan;
Du, Xuemei;
Gu, Riliang;
Wang, Guoying;
Schnable, Patrick S.;
Wang, Jianhua;
Li, Li

Publication type:

Article

Linked read technology for assembling large complex and polyploid genomes.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5040-z

By:

Ott, Alina;
Schnable, James C.;
Yeh, Cheng-Ting;
Wu, Linjiang;
Liu, Chao;
Hu, Heng-Cheng;
Dalgard, Clifton L.;
Sarkar, Soumik;
Schnable, Patrick S.

Publication type:

Article

Intragenic Meiotic Crossovers Generate Novel Alleles with Transgressive Expression Levels.

Published in:

Molecular Biology & Evolution, 2018, v. 35, n. 11, p. 2762, doi. 10.1093/molbev/msy174

By:

Liu, Sanzhen;
Schnable, James C;
Ott, Alina;
Yeh, Cheng-Ting "Eddy";
Springer, Nathan M;
Yu, Jianming;
Muehlbauer, Gary;
Timmermans, Marja C P;
Scanlon, Michael J;
Schnable, Patrick S

Publication type:

Article

Cell Type-Specific Gene Expression Profiling in Plants by Using a Combination of Laser Microdissection and High-Throughput Technologies.

Published in:

Plant & Cell Physiology, 2007, v. 48, n. 1, p. 3

By:

Kazuhiro Ohtsu;
Hirokazu Takahashi;
Patrick S. Schnable;
Mikio Nakazono

Publication type:

Article

Variation in gene expression of Andropogon gerardii in response to altered environmental conditions associated with climate change.

Published in:

Journal of Ecology, 2010, v. 98, n. 2, p. 374, doi. 10.1111/j.1365-2745.2009.01618.x

By:

Travers, Steven E.;
Tang, Zhongwen;
Caragea, Doina;
Garrett, Karen A.;
Hulbert, Scott H.;
Leach, Jan E.;
Bai, Jianfa;
Saleh, Amgad;
Knapp, Alan K.;
Fay, Philip A.;
Nippert, Jesse;
Schnable, Patrick S.;
Smith, Melinda D.

Publication type:

Article

Improving Response in Genomic Selection with a Population-Based Selection Strategy: Optimal Population Value Selection.

Published in:

Genetics, 2017, v. 206, n. 3, p. 1675, doi. 10.1534/genetics.116.197103

By:

Goiffon, Matthew;
Kusmec, Aaron;
Lizhi Wang;
Guiping Hu;
Schnable, Patrick S.

Publication type:

Article

High-Throughput Genetic Mapping of Mutants via Quantitative Single Nucleotide Polymorphism Typing.

Published in:

Genetics, 2010, v. 184, n. 1, p. 19, doi. 10.1534/genetics.109.107557

By:

Sanzhen Liu;
Chen, Hsin D.;
Makarevitch, Irina;
Shirmer, Rebecca;
Emrich, Scott J.;
Dietrich, Charles R.;
Brad Barbazuk, W.;
Springer, Nathan M.;
Schnable, Patrick S.

Publication type:

Article

DLA-Based Strategies for Cloning Insertion Mutants: Cloning the gl4 Locus of Maize Using Mit Transposon Tagged Alleles.

Published in:

Genetics, 2009, v. 183, n. 4, p. 1215, doi. 10.1534/genetics.109.108936

By:

Sanzhen Liu;
Dietricht, Charles R.;
Schnable, Patrick S.

Publication type:

Article

Role of RAD51 in the Repair of MuDR-Induced Double-Strand Breaks in Maize (Zea mays L.).

Published in:

Genetics, 2008, v. 178, n. 1, p. 57, doi. 10.1534/genetics.107.080374

By:

Jin Li;
Tsui-Jung Wen;
Schnable, Patrick S.

Publication type:

Article

Functional Analysis of Maize RAD51 in Meiosis and Double-Strand Break Repair.

Published in:

Genetics, 2007, v. 176, n. 3, p. 1469, doi. 10.1534/genetics.106.062604

By:

Jin Li;
Harper, Lisa C.;
Golubovskaya, Inna;
Wang, C. Rachel;
Weber, David;
Meeley, Robert B.;
McElver, John;
Bowen, Ben;
Cande, W. Zacheus;
Schnable, Patrick S.

Publication type:

Article

Involving Undergraduates in the Annotation and Analysis of Global Gene Expression Studies: Creation of a Maize Shoot Apical Meristem Expression Database.

Published in:

Genetics, 2007, v. 176, n. 2, p. 741, doi. 10.1534/genetics.106.066472

By:

Buckner, Brent;
Beck, Jon;
Browning, Kate;
Fritz, Ashleigh;
Grantham, Lisa;
Hoxha, Eneda;
Kamvar, Zhian;
Lough, Ashley;
Nikolova, Olga;
Schnable, Patrick S.;
Scanlon, Michael J.;
Janick-Buckner, Diane

Publication type:

Article

Nearly Identical Paralogs: Implications for Maize (Zea mays L.) Genome Evolution.

Published in:

Genetics, 2007, v. 175, n. 1, p. 429, doi. 10.1534/genetics.106.064006

By:

Emrich, Scott J.;
Li Li;
Tsui-Jung Wen;
Yandeau-Nelson, Marna D.;
Yan Fu;
Ling Guo;
Hui-Hsien Chou;
Aluru, Srinivas;
Ashlock, Daniel A.;
Schnable, Patrick S.

Publication type:

Article

Genetic Dissection of Intermated Recombinant Inbred Lines Using a New Genetic Map of Maize.

Published in:

Genetics, 2006, v. 174, n. 3, p. 1671, doi. 10.1534/genetics.106.060376

By:

Yan Fu;
Tsui-Jung Wen;
Yefim I. Ronin;
Hsin D. Chen;
Ling Guo;
Mester, David I.;
Yongjie Yang;
Lee, Michael;
Korol, Abraham B.;
Ashlock, Daniel A.;
Schnable, Patrick S.

Publication type:

Article

Effects of trans-acting Genetic Modifiers on Meiotic Recombination Across the a1-sh2 Interval of Maize.

Published in:

Genetics, 2006, v. 174, n. 1, p. 101, doi. 10.1534/genetics.105.049270

By:

Yandeau-Nelson, Mama D.;
Nikolau, Basil J.;
Patrick S. Schnable

Publication type:

Article

Unequal Sister Chromatid and Homolog Recombination at a Tandem Duplication of the a1 Locus in Maize.

Published in:

Genetics, 2006, v. 173, n. 4, p. 2211, doi. 10.1534/genetics.105.052712

By:

Yandeau-Nelson, Mama D.;
Yiji Xia;
Jin Li;
Neuffer, M. Gerald;
Schnable, Patrick S.

Publication type:

Article

Cis-effects on Meiotic Recombination Across Distinct a1-sh2 Intervals in a Common Zea Genetic Background.

Published in:

Genetics, 2005, v. 170, n. 4, p. 1929, doi. 10.1534/genetics.104.034454

By:

Hong Hao;
Schnable, Patrick S.

Publication type:

Article

MuDR Transposase Increases the Frequency of Meiotic Crossovers in the Vicinity of a Mu Insertion in the Maize al Gene.

Published in:

Genetics, 2005, v. 169, n. 2, p. 917, doi. 10.1534/genetics.104.035089

By:

Yandeau-Nelson, Marna D.;
Qing Zhou;
Hong Yao;
Xiaojie Xu;
Niko, Basil J.;
Schnable, Patrick S.

Publication type:

Article

Alternative Transcription Initiation Sites and Polyadenylation Sites Are Recruited During Mu Suppression at the rf2a Locus of Maize.

Published in:

Genetics, 2003, v. 163, n. 2, p. 685, doi. 10.1093/genetics/163.2.685

By:

Xiangqin Cui;
An-Ping Hsia;
Feng Liu;
Ashlock, Daniel A.;
Wise, Roger P.;
Schnable, Patrick S.

Publication type:

Article

Maize Mu Transposons Are Targeted to the 5' Untranslated Region of the gl8 Gene and Sequences Flanking Mu Target-Site Duplications Exhibit Nonrandom Nucleotide Composition Throughout the Genome.

Published in:

Genetics, 2002, v. 160, n. 2, p. 697, doi. 10.1093/genetics/160.2.697

By:

Dietrich, Charles R.;
Feng Cui;
Packila, Mark L.;
Jin Li;
Ashlock, Daniel A.;
Nikolau, Basil J.;
Schnable, Patrick S.

Publication type:

Article

DNA sequence analyses support the role of interrupted gap repair in the origin of internal...

Published in:

Genetics, 1996, v. 142, n. 2, p. 603, doi. 10.1093/genetics/142.2.603

By:

Hsia, An-Ping;
Schnable, Patrick S.

Publication type:

Article

Recovery of heritable, transposon-induced, mutant alleles of the rf2 nuclear restorer of...

Published in:

Genetics, 1994, v. 136, n. 3, p. 1171, doi. 10.1093/genetics/136.3.1171

By:

Schnable, Patrick S.;
Wise, Roger P.

Publication type:

Article

Identifying loci with breeding potential across temperate and tropical adaptation via EigenGWAS and EnvGWAS.

Published in:

Molecular Ecology, 2019, v. 28, n. 15, p. 3544, doi. 10.1111/mec.15169

By:

Li, Jing;
Chen, Guo‐Bo;
Rasheed, Awais;
Li, Delin;
Sonder, Kai;
Zavala Espinosa, Cristian;
Wang, Jiankang;
Costich, Denise E.;
Schnable, Patrick S.;
Hearne, Sarah J.;
Li, Huihui

Publication type:

Article

The genome of broomcorn millet.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08409-5

By:

Zou, Changsong;
Li, Leiting;
Miki, Daisuke;
Li, Delin;
Tang, Qiming;
Xiao, Lihong;
Rajput, Santosh;
Deng, Ping;
Peng, Li;
Jia, Wei;
Huang, Ru;
Zhang, Meiling;
Sun, Yidan;
Hu, Jiamin;
Fu, Xing;
Schnable, Patrick S.;
Chang, Yuxiao;
Li, Feng;
Zhang, Hui;
Feng, Baili

Publication type:

Article

Correction: Genotype-by-environment interactions affecting heterosis in maize.

Published in:

PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0219528

By:

Li, Zhi;
Coffey, Lisa;
Garfin, Jacob;
Miller, Nathan D.;
White, Michael R.;
Spalding, Edgar P.;
Leon, Natalia de;
Kaeppler, Shawn M.;
Schnable, Patrick S.;
Springer, Nathan M.;
Hirsch, Candice N.

Publication type:

Article

Correction: Mendelian and Non-Mendelian Regulation of Gene Expression in Maize.

Published in:

2018

By:

Li, Lin;
Petsch, Katherine;
Shimizu, Rena;
Liu, Sanzhen;
Xu, Wayne Wenzhong;
Ying, Kai;
Yu, Jianming;
Scanlon, Michael J.;
Schnable, Patrick S.;
Timmermans, Marja C. P.;
Springer, Nathan M.;
Muehlbauer, Gary J.

Publication type:

Correction Notice

FarmCPUpp: Efficient large‐scale genomewide association studies.

Published in:

Plant Direct, 2018, v. 2, n. 4, p. N.PAG, doi. 10.1002/pld3.53

By:

Kusmec, Aaron;
Schnable, Patrick S.

Publication type:

Article

Expression and Nucleotide Diversity of the Maize RIK Gene.

Published in:

Journal of Heredity, 2008, v. 99, n. 4, p. 407, doi. 10.1093/jhered/esn013

By:

Buckner, Brent;
Swaggart, Kayleigh A.;
Wong, Cheryl C.;
Smith, Heath A.;
Aurand, Kelsey M.;
Scanlon, Michael J.;
Schnable, Patrick S.;
Janick-Buckner, Diane

Publication type:

Article

Microarray analysis of vegetative phase change in maize.

Published in:

Plant Journal, 2008, v. 56, n. 6, p. 1045, doi. 10.1111/j.1365-313X.2008.03661.x

By:

Strable, Josh;
Borsuk, Lisa;
Nettleton, Dan;
Schnable, Patrick S.;
Irish, Erin E.

Publication type:

Article

The maize ( Zea mays L.) roothairless3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield.

Published in:

Plant Journal, 2008, v. 54, n. 5, p. 888, doi. 10.1111/j.1365-313X.2008.03459.x

By:

Hochholdinger, Frank;
Tsui-Jung Wen;
Zimmermann, Roman;
Chimot-Marolle, Patricia;
da Costa e Silva, Oswaldo;
Bruce, Wesley;
Lamkey, Kendall R.;
Wienand, Udo;
Schnable, Patrick S.

Publication type:

Article

Global gene expression analysis of the shoot apical meristem of maize ( Zea mays L.).

Published in:

Plant Journal, 2007, v. 52, n. 3, p. 391, doi. 10.1111/j.1365-313X.2007.03244.x

By:

Ohtsu, Kazuhiro;
Smith, Marianne B.;
Emrich, Scott J.;
Borsuk, Lisa A.;
Zhou, Ruilian;
Chen, Tianle;
Xiaolan Zhang;
Timmermans, Marja C. P.;
Beck, Jon;
Buckner, Brent;
Janick-Buckner, Diane;
Nettleton, Dan;
Scanlon, Michael J.;
Schnable, Patrick S.

Publication type:

Article

SNP discovery via 454 transcriptome sequencing.

Published in:

Plant Journal, 2007, v. 51, n. 5, p. 910, doi. 10.1111/j.1365-313X.2007.03193.x

By:

Barbazuk, W. Brad;
Emrich, Scott J.;
Chen, Hsin D.;
Li Li;
Schnable, Patrick S.

Publication type:

Article

Characterization of twoGL8paralogs reveals that the 3-ketoacyl reductase component of fatty acid elongase is essential for maize (Zea maysL.) development.

Published in:

Plant Journal, 2005, v. 42, n. 6, p. 844, doi. 10.1111/j.1365-313X.2005.02418.x

By:

Dietrich, Charles R.;
Perera, M. Ann D. N.;
D. Yandeau-Nelson, Marna;
Meeley, Robert B.;
Nikolau, Basil J.;
Schnable, Patrick S.

Publication type:

Article

The Etched1 gene of Zea mays (L.) encodes a zinc ribbon protein that belongs to the transcriptionally active chromosome (TAC) of plastids and is similar to the transcription factor TFIIS.

Published in:

Plant Journal, 2004, v. 38, n. 6, p. 923, doi. 10.1111/j.1365-313X.2004.02094.x

By:

Da Costa E Silva, Oswaldo;
Lorbiecke, Rene;
Garg, Preeti;
Muller, Lenard;
Waßmann, Martina;
Lauert, Patricia;
Scanlon, Mike;
Hsia, An-Ping;
Schnable, Patrick S.;
Krupinska, Karin;
Wienand, Udo

Publication type:

Article