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Genome sequencing of the multicellular alga Astrephomene provides insights into convergent evolution of germ-soma differentiation.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-01521-x
By:
- Yamashita, Shota;
- Yamamoto, Kayoko;
- Matsuzaki, Ryo;
- Suzuki, Shigekatsu;
- Yamaguchi, Haruyo;
- Hirooka, Shunsuke;
- Minakuchi, Yohei;
- Miyagishima, Shin-ya;
- Kawachi, Masanobu;
- Toyoda, Atsushi;
- Nozaki, Hisayoshi
Publication type:
Article
Natural variations of cold tolerance and temperature acclimation in Caenorhabditis elegans.
Published in:
Journal of Comparative Physiology B: Biochemical, Systemic & Environmental Physiology, 2016, v. 186, n. 8, p. 985, doi. 10.1007/s00360-016-1011-3
By:
- Okahata, Misaki;
- Ohta, Akane;
- Mizutani, Hitomi;
- Kuhara, Atsushi;
- Minakuchi, Yohei;
- Toyoda, Atsushi
Publication type:
Article
A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum.
Published in:
Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02704-y
By:
- Nakano, Michiharu;
- Hirakawa, Hideki;
- Fukai, Eigo;
- Toyoda, Atsushi;
- Kajitani, Rei;
- Minakuchi, Yohei;
- Itoh, Takehiko;
- Higuchi, Yohei;
- Kozuka, Toshiaki;
- Bono, Hidemasa;
- Shirasawa, Kenta;
- Shiraiwa, Ippei;
- Sumitomo, Katsuhiko;
- Hisamatsu, Tamotsu;
- Shibata, Michio;
- Isobe, Sachiko;
- Taniguchi, Kenji;
- Kusaba, Makoto
Publication type:
Article
A genome database for a Japanese population of the larvacean Oikopleura dioica.
Published in:
Development, Growth & Differentiation, 2020, v. 62, n. 6, p. 450, doi. 10.1111/dgd.12689
By:
- Wang, Kai;
- Tomura, Ryo;
- Chen, Wei;
- Kiyooka, Miho;
- Ishizaki, Hinako;
- Aizu, Tomoyuki;
- Minakuchi, Yohei;
- Seki, Masahide;
- Suzuki, Yutaka;
- Omotezako, Tatsuya;
- Suyama, Ritsuko;
- Masunaga, Aki;
- Plessy, Charles;
- Luscombe, Nicholas M.;
- Dantec, Christelle;
- Lemaire, Patrick;
- Itoh, Takehiko;
- Toyoda, Atsushi;
- Nishida, Hiroki;
- Onuma, Takeshi A.
Publication type:
Article
Long‐read sequence analysis for clustered genomic copy number aberrations revealed architectures of intricately intertwined rearrangements.
Published in:
American Journal of Medical Genetics. Part A, 2023, v. 191, n. 1, p. 112, doi. 10.1002/ajmg.a.62997
By:
- Tamura, Takeaki;
- Yamamoto Shimojima, Keiko;
- Okamoto, Nobuhiko;
- Yagasaki, Hiroshi;
- Morioka, Ichiro;
- Kanno, Hitoshi;
- Minakuchi, Yohei;
- Toyoda, Atsushi;
- Yamamoto, Toshiyuki
Publication type:
Article
Comparison of Genomic and Epigenomic Expression in Monozygotic Twins Discordant for Rett Syndrome.
Published in:
PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066729
By:
- Miyake, Kunio;
- Yang, Chunshu;
- Minakuchi, Yohei;
- Ohori, Kenta;
- Soutome, Masaki;
- Hirasawa, Takae;
- Kazuki, Yasuhiro;
- Adachi, Noboru;
- Suzuki, Seiko;
- Itoh, Masayuki;
- Goto, Yu-ichi;
- Andoh, Tomoko;
- Kurosawa, Hiroshi;
- Oshimura, Mitsuo;
- Sasaki, Masayuki;
- Toyoda, Atsushi;
- Kubota, Takeo
Publication type:
Article
The mechanoreceptor DEG‐1 regulates cold tolerance in Caenorhabditis elegans.
Published in:
EMBO Reports, 2020, v. 21, n. 3, p. 1, doi. 10.15252/embr.201948671
By:
- Takagaki, Natsune;
- Ohta, Akane;
- Ohnishi, Kohei;
- Kawanabe, Akira;
- Minakuchi, Yohei;
- Toyoda, Atsushi;
- Fujiwara, Yuichiro;
- Kuhara, Atsushi
Publication type:
Article
Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09575-2
By:
- Kajitani, Rei;
- Yoshimura, Dai;
- Okuno, Miki;
- Minakuchi, Yohei;
- Kagoshima, Hiroshi;
- Fujiyama, Asao;
- Kubokawa, Kaoru;
- Kohara, Yuji;
- Toyoda, Atsushi;
- Itoh, Takehiko
Publication type:
Article
Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-019-56881-2
By:
- Satoh, Yasunari;
- Asakawa, Jun-ichi;
- Nishimura, Mayumi;
- Kuo, Tony;
- Shinkai, Norio;
- Cullings, Harry M.;
- Minakuchi, Yohei;
- Sese, Jun;
- Toyoda, Atsushi;
- Shimada, Yoshiya;
- Nakamura, Nori;
- Uchimura, Arikuni
Publication type:
Article
Mining of the Uncharacterized Cytochrome P450 Genes Involved in Alkaloid Biosynthesis in California Poppy Using a Draft Genome Sequence.
Published in:
Plant & Cell Physiology, 2018, v. 59, n. 2, p. 222, doi. 10.1093/pcp/pcx210
By:
- Hori, Kentaro;
- Yamada, Yasuyuki;
- Purwanto, Ratmoyo;
- Minakuchi, Yohei;
- Toyoda, Atsushi;
- Hirakawa, Hideki;
- Sato, Fumihiko
Publication type:
Article
Genome-Wide Analysis of Intraspecific DNA Polymorphism in ‘Micro-Tom’, a Model Cultivar of Tomato (Solanum lycopersicum).
Published in:
Plant & Cell Physiology, 2014, v. 55, n. 2, p. 445, doi. 10.1093/pcp/pct181
By:
- Kobayashi, Masaaki;
- Nagasaki, Hideki;
- Garcia, Virginie;
- Just, Daniel;
- Bres, Cécile;
- Mauxion, Jean-Philippe;
- Le Paslier, Marie-Christine;
- Brunel, Dominique;
- Suda, Kunihiro;
- Minakuchi, Yohei;
- Toyoda, Atsushi;
- Fujiyama, Asao;
- Toyoshima, Hiromi;
- Suzuki, Takayuki;
- Igarashi, Kaori;
- Rothan, Christophe;
- Kaminuma, Eli;
- Nakamura, Yasukazu;
- Yano, Kentaro;
- Aoki, Koh
Publication type:
Article
Genome sequence and analysis of the Japanese morning glory Ipomoea nil.
Published in:
Nature Communications, 2016, v. 7, n. 11, p. 13295, doi. 10.1038/ncomms13295
By:
- Hoshino, Atsushi;
- Jayakumar, Vasanthan;
- Nitasaka, Eiji;
- Toyoda, Atsushi;
- Noguchi, Hideki;
- Itoh, Takehiko;
- Shin-I, Tadasu;
- Minakuchi, Yohei;
- Koda, Yuki;
- Nagano, Atsushi J.;
- Yasugi, Masaki;
- Honjo, Mie N.;
- Kudoh, Hiroshi;
- Seki, Motoaki;
- Kamiya, Asako;
- Shiraki, Toshiyuki;
- Carninci, Piero;
- Asamizu, Erika;
- Nishide, Hiroyo;
- Tanaka, Sachiko
Publication type:
Article
Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein.
Published in:
Nature Communications, 2016, v. 7, n. 9, p. 12808, doi. 10.1038/ncomms12808
By:
- Hashimoto, Takuma;
- Horikawa, Daiki D.;
- Saito, Yuki;
- Kuwahara, Hirokazu;
- Kozuka-Hata, Hiroko;
- Shin-I, Tadasu;
- Minakuchi, Yohei;
- Ohishi, Kazuko;
- Motoyama, Ayuko;
- Aizu, Tomoyuki;
- Enomoto, Atsushi;
- Kondo, Koyuki;
- Tanaka, Sae;
- Hara, Yuichiro;
- Koshikawa, Shigeyuki;
- Sagara, Hiroshi;
- Miura, Toru;
- Yokobori, Shin-ichi;
- Miyagawa, Kiyoshi;
- Suzuki, Yutaka
Publication type:
Article
The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity.
Published in:
Nature Communications, 2016, v. 7, n. 4, p. 11370, doi. 10.1038/ncomms11370
By:
- Hanschen, Erik R.;
- Marriage, Tara N.;
- Ferris, Patrick J.;
- Hamaji, Takashi;
- Toyoda, Atsushi;
- Fujiyama, Asao;
- Neme, Rafik;
- Noguchi, Hideki;
- Minakuchi, Yohei;
- Suzuki, Masahiro;
- Kawai-Toyooka, Hiroko;
- Smith, David R.;
- Sparks, Halle;
- Anderson, Jaden;
- Bakarić, Robert;
- Luria, Victor;
- Karger, Amir;
- Kirschner, Marc W.;
- Durand, Pierre M.;
- Michod, Richard E.
Publication type:
Article
Exploring the Limits and Causes of Plastid Genome Expansion in Volvocine Green Algae.
Published in:
Genome Biology & Evolution, 2018, v. 10, n. 9, p. 2248, doi. 10.1093/gbe/evy175
By:
- Gaouda, Hager;
- Hamaji, Takashi;
- Yamamoto, Kayoko;
- Kawai-Toyooka, Hiroko;
- Suzuki, Masahiro;
- Noguchi, Hideki;
- Minakuchi, Yohei;
- Toyoda, Atsushi;
- Fujiyama, Asao;
- Nozaki, Hisayoshi
Publication type:
Article
Multiple Independent Changes in Mitochondrial Genome Conformation in Chlamydomonadalean Algae.
Published in:
Genome Biology & Evolution, 2017, v. 9, n. 4, p. 993, doi. 10.1093/gbe/evx060
By:
- Takashi Hamaji;
- Hiroko Kawai-Toyooka;
- Atsushi Toyoda;
- Yohei Minakuchi;
- Masahiro Suzuki;
- Asao Fujiyama;
- Hisayoshi Nozaki;
- Smith, David Roy
Publication type:
Article
Comparative analysis using the draft genome sequence of California poppy (Eschscholzia californica) for exploring the candidate genes involved in benzylisoquinoline alkaloid biosynthesis.
Published in:
Bioscience, Biotechnology & Biochemistry, 2021, v. 85, n. 4, p. 851, doi. 10.1093/bbb/zbaa091
By:
- Yamada, Yasuyuki;
- Hirakawa, Hideki;
- Hori, Kentaro;
- Minakuchi, Yohei;
- Toyoda, Atsushi;
- Shitan, Nobukazu;
- Sato, Fumihiko
Publication type:
Article
SPI: a tool for incorporating gene expression data into a four-dimensional database of Caenorhabditis elegans embryogenesis.
Published in:
Bioinformatics, 2004, v. 20, n. 7, p. 1097, doi. 10.1093/bioinformatics/bth045
By:
- Yohei Minakuchi;
- Masahiro Ito;
- Yuji Kohara
Publication type:
Article
Anisogamy evolved with a reduced sex-determining region in volvocine green algae.
Published in:
Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0019-5
By:
- Hamaji, Takashi;
- Kawai-Toyooka, Hiroko;
- Uchimura, Haruka;
- Suzuki, Masahiro;
- Noguchi, Hideki;
- Minakuchi, Yohei;
- Toyoda, Atsushi;
- Fujiyama, Asao;
- Miyagishima, Shin-ya;
- Umen, James G.;
- Nozaki, Hisayoshi
Publication type:
Article
Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06116-1
By:
- Ando, Toshiya;
- Matsuda, Takeshi;
- Goto, Kumiko;
- Hara, Kimiko;
- Ito, Akinori;
- Hirata, Junya;
- Yatomi, Joichiro;
- Kajitani, Rei;
- Okuno, Miki;
- Yamaguchi, Katsushi;
- Kobayashi, Masaaki;
- Takano, Tomoyuki;
- Minakuchi, Yohei;
- Seki, Masahide;
- Suzuki, Yutaka;
- Yano, Kentaro;
- Itoh, Takehiko;
- Shigenobu, Shuji;
- Toyoda, Atsushi;
- Niimi, Teruyuki
Publication type:
Article

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