Works matching AU Iyer, Matthew K

Results: 14

Personalized Oncology Through Integrative High-Throughput Sequencing: A Pilot Study.

Published in:

Science Translational Medicine, 2011, v. 3, n. 111, p. 1, doi. 10.1126/scitranslmed.3003161

By:

Roychowdhury, Sameek;
Iyer, Matthew K.;
Robinson, Dan R.;
Lonigro, Robert J.;
Yi-Mi Wu;
Xuhong Cao;
Kalyana-Sundaram, Shanker;
Lee Sam;
Balbin, O. Alejandro;
Quist, Michael J.;
Barrette, Terrence;
Everett, Jessica;
Siddiqui, Javed;
Kunju, Lakshmi P.;
Navone, Nora;
Araujo, John C.;
Troncoso, Patricia;
Logothetis, Christopher J.;
Innis, Jeffrey W.;
Smith, David C.

Publication type:

Article

The landscape of long noncoding RNAs in the human transcriptome.

Published in:

Nature Genetics, 2015, v. 47, n. 3, p. 199, doi. 10.1038/ng.3192

By:

Iyer, Matthew K;
Chinnaiyan, Arul M;
Niknafs, Yashar S;
Malik, Rohit;
Sahu, Anirban;
Dhanasekaran, Saravana M;
Singhal, Udit;
Cao, Xuhong;
Hosono, Yasuyuki;
Barrette, Terrence R;
Prensner, John R;
Poliakov, Anton;
Wu, Yi-Mi;
Robinson, Dan R;
Evans, Joseph R;
Zhao, Shuang;
Beer, David G;
Feng, Felix Y;
Iyer, Hariharan K

Publication type:

Article

The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex.

Published in:

Nature Genetics, 2013, v. 45, n. 11, p. 1392, doi. 10.1038/ng.2771

By:

Prensner, John R;
Iyer, Matthew K;
Sahu, Anirban;
Asangani, Irfan A;
Cao, Qi;
Patel, Lalit;
Vergara, Ismael A;
Davicioni, Elai;
Erho, Nicholas;
Ghadessi, Mercedeh;
Jenkins, Robert B;
Triche, Timothy J;
Malik, Rohit;
Bedenis, Rachel;
McGregor, Natalie;
Ma, Teng;
Chen, Wei;
Han, Sumin;
Jing, Xiaojun;
Cao, Xuhong

Publication type:

Article

Identification of recurrent NAB2-STAT6 gene fusions in solitary fibrous tumor by integrative sequencing.

Published in:

Nature Genetics, 2013, v. 45, n. 2, p. 180, doi. 10.1038/ng.2509

By:

Robinson, Dan R;
Wu, Yi-Mi;
Kalyana-Sundaram, Shanker;
Cao, Xuhong;
Lonigro, Robert J;
Sung, Yun-Shao;
Chen, Chun-Liang;
Zhang, Lei;
Wang, Rui;
Su, Fengyun;
Iyer, Matthew K;
Roychowdhury, Sameek;
Siddiqui, Javed;
Pienta, Kenneth J;
Kunju, Lakshmi P;
Talpaz, Moshe;
Mosquera, Juan Miguel;
Singer, Samuel;
Schuetze, Scott M;
Antonescu, Cristina R

Publication type:

Article

Prostate cancer cell-stromal cell crosstalk via FGFR1 mediates antitumor activity of dovitinib in bone metastases.

Published in:

Science Translational Medicine, 2014, v. 6, n. 252, p. 1, doi. 10.1126/scitranslmed.3009332

By:

Xinhai Wan;
Corn, Paul G.;
Jun Yang;
Palanisamy, Nallasivam;
Starbuck, Michael W.;
Efstathiou, Eleni;
Tapia, Elsa M. Li Ning;
Zurita, Amado J.;
Aparicio, Ana;
Ravoori, Murali K.;
Vazquez, Elba S.;
Robinson, Dan R.;
Yi-Mi Wu;
Xuhong Cao;
Iyer, Matthew K.;
McKeehan, Wallace;
Kundra, Vikas;
Fen Wang;
Troncoso, Patricia;
Chinnaiyan, Arul M.

Publication type:

Article

ChimeraScan: a tool for identifying chimeric transcription in sequencing data.

Published in:

Bioinformatics, 2011, v. 27, n. 20, p. 2903, doi. 10.1093/bioinformatics/btr467

By:

Iyer, Matthew K.;
Chinnaiyan, Arul M.;
Maher, Christopher A.

Publication type:

Article

The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression.

Published in:

Nature Communications, 2016, v. 7, n. 9, p. 12791, doi. 10.1038/ncomms12791

By:

Niknafs, Yashar S.;
Han, Sumin;
Ma, Teng;
Speers, Corey;
Zhang, Chao;
Wilder-Romans, Kari;
Iyer, Matthew K.;
Pitchiaya, Sethuramasundaram;
Malik, Rohit;
Hosono, Yasuyuki;
Prensner, John R.;
Poliakov, Anton;
Singhal, Udit;
Xiao, Lanbo;
Kregel, Steven;
Siebenaler, Ronald F.;
Zhao, Shuang G.;
Uhl, Michael;
Gawronski, Alexander;
Hayes, Daniel F.

Publication type:

Article

Oculus: faster sequence alignment by streaming read compression.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 297, doi. 10.1186/1471-2105-13-297

By:

Veeneman, Brendan A.;
Iyer, Matthew K.;
Chinnaiyan, Arul M.

Publication type:

Article

Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 24, doi. 10.1186/s13059-014-0570-4

By:

Tsoi, Lam C.;
Iyer, Matthew K.;
Stuart, Philip E.;
Swindell, William R.;
Gudjonsson, Johann E.;
Tejasvi, Trilokraj;
Sarkar, Mrinal K.;
Li, Bingshan;
Ding, Jun;
Voorhees, John J.;
Kang, Hyun M.;
Nair, Rajan P.;
Chinnaiyan, Arul M.;
Abecasis, Goncalo R.;
Elder, James T.

Publication type:

Article

Targeting the MLL complex in castration-resistant prostate cancer.

Published in:

Nature Medicine, 2015, v. 21, n. 4, p. 344, doi. 10.1038/nm.3830

By:

Malik, Rohit;
Khan, Amjad P;
Asangani, Irfan A;
Cieślik, Marcin;
Prensner, John R;
Wang, Xiaoju;
Iyer, Matthew K;
Jiang, Xia;
Borkin, Dmitry;
Escara-Wilke, June;
Stender, Rachell;
Wu, Yi-Mi;
Niknafs, Yashar S;
Jing, Xiaojun;
Qiao, Yuanyuan;
Palanisamy, Nallasivam;
Kunju, Lakshmi P;
Krishnamurthy, Pranathi M;
Yocum, Anastasia K;
Mellacheruvu, Dattatreya

Publication type:

Article

ASO Visual Abstract: Timing of Adjuvant Immunotherapy in Stage III Melanoma, Does It Matter?

Published in:

2023

By:

Rhodin, Kristen E.;
Jung, Sin-Ho;
Elleson, Kelly;
DePalo, Danielle;
Straker, Richard;
McKinley, Sophia;
Beekman, Kate;
Parker, Lily;
Chen, Suephy;
Iyer, Matthew K.;
Salama, April K. S.;
Bartlett, Edmund;
Karakousis, Giorgos;
Zager, Jonathan S.;
Tyler, Douglas S.;
Beasley, Georgia M.

Publication type:

Abstract

Insights into Chinese prostate cancer with RNA-seq.

Published in:

Cell Research, 2012, v. 22, n. 5, p. 786, doi. 10.1038/cr.2012.50

By:

Sahu, Anirban;
Iyer, Matthew K;
Chinnaiyan, Arul M

Publication type:

Article

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression.

Published in:

Nature Biotechnology, 2011, v. 29, n. 8, p. 742, doi. 10.1038/nbt.1914

By:

Prensner, John R;
Iyer, Matthew K;
Balbin, O Alejandro;
Dhanasekaran, Saravana M;
Cao, Qi;
Brenner, J Chad;
Laxman, Bharathi;
Asangani, Irfan A;
Grasso, Catherine S;
Kominsky, Hal D;
Cao, Xuhong;
Jing, Xiaojun;
Wang, Xiaoju;
Siddiqui, Javed;
Wei, John T;
Robinson, Daniel;
Iyer, Hari K;
Palanisamy, Nallasivam;
Maher, Christopher A;
Chinnaiyan, Arul M

Publication type:

Article

RNA-Seq unleashed.

Published in:

Nature Biotechnology, 2011, v. 29, n. 7, p. 599, doi. 10.1038/nbt.1915

By:

Iyer, Matthew K;
Chinnaiyan, Arul M

Publication type:

Article