Found: 30
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Model-driven experimental design workflow expands understanding of regulatory role of Nac in Escherichia coli.
- Published in:
- NAR Genomics & Bioinformatics, 2023, v. 5, n. 1, p. 1, doi. 10.1093/nargab/lqad006
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- Article
Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli.
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- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02516-0
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- Article
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655.
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- Nucleic Acids Research, 2018, v. 46, n. 20, p. 10682, doi. 10.1093/nar/gky752
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- Article
Recon3D enables a three-dimensional view of gene variation in human metabolism.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 3, p. 272, doi. 10.1038/nbt.4072
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- Article
iML1515, a knowledgebase that computes Escherichia coli traits.
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- Nature Biotechnology, 2017, v. 35, n. 10, p. 904, doi. 10.1038/nbt.3956
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- Article
Spontaneous regression of Merkel cell carcinoma of the nose.
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- Head & Neck, 2010, v. 32, n. 3, p. 411, doi. 10.1002/hed.21095
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- Article
Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.753521
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- Article
RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics.
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- PLoS Genetics, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pgen.1009821
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- Article
The Escherichia coli transcriptome mostly consists of independently regulated modules.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-13483-w
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- Article
<italic>Escherichia coli</italic> B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0587-5
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- Article
OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States.
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- Molecular Biology & Evolution, 2020, v. 37, n. 3, p. 660, doi. 10.1093/molbev/msz251
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- Article
Multi-omic data integration enables discovery of hidden biological regularities.
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- Nature Communications, 2016, v. 7, n. 10, p. 13091, doi. 10.1038/ncomms13091
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- Article
Scrub typhus associated with central and peripheral nervous system involvement: A rare diagnostic entity.
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- 2022
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- Letter to the Editor
Rabbit Syndrome: An Asymmetrical Presentation.
- Published in:
- 2021
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- Publication type:
- Letter to the Editor
Independent component analysis recovers consistent regulatory signals from disparate datasets.
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- PLoS Computational Biology, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.pcbi.1008647
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- Article
Adult porcine (Sus scrofa) derived inner ear cells: Characteristics in in‐vitro cultures.
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- Anatomical Record: Advances in Integrative Anatomy & Evolutionary Biology, 2023, v. 306, n. 8, p. 2119, doi. 10.1002/ar.25149
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- Article
Pipeline Flex embolisation device with Shield Technology for the treatment of patients with intracranial aneurysms: periprocedural and 6 month outcomes.
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- Neuroradiology Journal, 2020, v. 33, n. 6, p. 471, doi. 10.1177/1971400920966749
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- Article
A multi-scale expression and regulation knowledge base for Escherichia coli.
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- Nucleic Acids Research, 2023, v. 51, n. 19, p. 10176, doi. 10.1093/nar/gkad750
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- Article
Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa.
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- Nucleic Acids Research, 2022, v. 50, n. 17, p. 9675, doi. 10.1093/nar/gkac743
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- Article
Machine learning from Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators.
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- Nucleic Acids Research, 2022, v. 50, n. 7, p. 3658, doi. 10.1093/nar/gkac187
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- Article
iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning.
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- Nucleic Acids Research, 2021, v. 49, n. D1, p. D112, doi. 10.1093/nar/gkaa810
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- Article
The Bitome: digitized genomic features reveal fundamental genome organization.
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- Nucleic Acids Research, 2020, v. 48, n. 18, p. 10157, doi. 10.1093/nar/gkaa774
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- Article
y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function.
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- Nucleic Acids Research, 2019, v. 47, n. 5, p. 2446, doi. 10.1093/nar/gkz030
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- Article
iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia.
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- PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012546
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- Article
Proteome allocation is linked to transcriptional regulation through a modularized transcriptome.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49231-y
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- Publication type:
- Article
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.
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- PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006971
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- Article
ssbio: a Python framework for structural systems biology.
- Published in:
- Bioinformatics, 2018, v. 34, n. 12, p. 2155, doi. 10.1093/bioinformatics/bty077
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- Publication type:
- Article
Machine learning in computational biology to accelerate high-throughput protein expression.
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- Bioinformatics, 2017, v. 33, n. 16, p. 2487, doi. 10.1093/bioinformatics/btx207
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- Publication type:
- Article
Machine learning uncovers independently regulated modules in the Bacillus subtilis transcriptome.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-20153-9
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- Publication type:
- Article
Optimal dimensionality selection for independent component analysis of transcriptomic data.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04497-7
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- Article