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DNA Microarrays and Gene Expression -- From Experiments to Data Analysis and Modelling.
Published in:
2003
By:
- Causton, Helen
Publication type:
Book Review
Author Correction: Eukaryotic cell biology is temporally coordinated to support the energetic demands of protein homeostasis.
Published in:
2021
By:
- O'Neill, John S.;
- Hoyle, Nathaniel P.;
- Robertson, J. Brian;
- Edgar, Rachel S.;
- Beale, Andrew D.;
- Peak-Chew, Sew Y.;
- Day, Jason;
- Costa, Ana S. H.;
- Frezza, Christian;
- Causton, Helen C.
Publication type:
Correction Notice
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).
Published in:
Nature Biotechnology, 2008, v. 26, n. 3, p. 305, doi. 10.1038/nbt1391
By:
- Deutsch, Eric W.;
- Ball, Catherine A.;
- Berman, Jules J.;
- Bova, G. Steven;
- Brazma, Alvis;
- Bumgarner, Roger E.;
- Campbell, David;
- Causton, Helen C.;
- Christiansen, Jeffrey H.;
- Daian, Fabrice;
- Dauga, Delphine;
- Davidson, Duncan R.;
- Gimenez, Gregory;
- Goo, Young Ah;
- Grimmond, Sean;
- Henrich, Thorsten;
- Herrmann, Bernhard G.;
- Johnson, Michael H.;
- Korb, Martin;
- Mills, Jason C.
Publication type:
Article
Wrestling with SUMO and bio-ontologies.
Published in:
2006
By:
- Stoeckert, Christian;
- Ball, Catherine;
- Brazma, Alvis;
- Brinkman, Ryan;
- Causton, Helen;
- Fan, Liju;
- Fostel, Jennifer;
- Fragoso, Gilberto;
- Heiskanen, Mervi;
- Holstege, Frank;
- Morrison, Norman;
- Parkinson, Helen;
- Quackenbush, John;
- Rocca-Serra, Philippe;
- Sansone, Susanna-Assunta;
- Sarkans, Ugis;
- Sherlock, Gavin;
- Stevens, Robert;
- Taylor, Chris;
- Taylor, Ronald
Publication type:
Letter
Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease.
Published in:
Nature Genetics, 2005, v. 37, n. 3, p. 243, doi. 10.1038/ng1522
By:
- Hubner, Norbert;
- Wallace, Caroline A;
- Zimdahl, Heike;
- Petretto, Enrico;
- Schulz, Herbert;
- Maciver, Fiona;
- Mueller, Michael;
- Hummel, Oliver;
- Monti, Jan;
- Zidek, Vaclav;
- Musilova, Alena;
- Kren, Vladimir;
- Causton, Helen;
- Game, Laurence;
- Born, Gabriele;
- Schmidt, Sabine;
- Müller, Anita;
- Cook, Stuart A;
- Kurtz, Theodore W;
- Whittaker, John
Publication type:
Article
Microarray databases: standards and ontologies.
Published in:
Nature Genetics, 2002, v. 32, p. 469, doi. 10.1038/ng1028
By:
- Stoeckert, Christian J.;
- Causton, Helen C.;
- Ball, Catherine A.
Publication type:
Article
Minimum information about a microarray experiment (MIAME)?toward standards for microarray data.
Published in:
Nature Genetics, 2001, v. 29, n. 4, p. 365, doi. 10.1038/ng1201-365
By:
- Brazma, Alvis;
- Hingamp, Pascal;
- Quackenbush, John;
- Sherlock, Gavin;
- Spellman, Paul;
- Stoeckert, Chris;
- Aach, John;
- Ansorge, Wilhelm;
- Ball, Catherine A.;
- Causton, Helen C.;
- Gaasterland, Terry;
- Glenisson, Patrick;
- Holstege, Frank C.P.;
- Kim, Irene F.;
- Markowitz, Victor;
- Matese, John C.;
- Parkinson, Helen;
- Robinson, Alan;
- Sarkans, Ugis
Publication type:
Article
Functional redundancy of two transcriptional coactivator complexes.
Published in:
1999
By:
- Causton, Helen C.;
- Lee, Tong Ihn;
- Holstege, Frank C.P.;
- Jennings, Ezra;
- Young, Richard A.
Publication type:
Abstract
The External RNA Controls Consortium: a progress report.
Published in:
Nature Methods, 2005, v. 2, n. 10, p. 731, doi. 10.1038/nmeth1005-731
By:
- Baker, Shawn C.;
- Bauer, Steven R.;
- Beyer, Richard P.;
- Brenton, James D.;
- Bromley, Bud;
- Burrill, John;
- Causton, Helen;
- Conley, Michael P.;
- Elespuru, Rosalie;
- Fero, Michael;
- Foy, Carole;
- Fuscoe, James;
- Xiaolian Gao;
- Gerhold, David Lee;
- Gilles, Patrick;
- Goodsaid, Federico;
- Xu Guo;
- Hackett, Joe;
- Hockett, Richard D.;
- Ikonomi, Pranvera
Publication type:
Article
Microarray Data Standards: An Open Letter.
Published in:
Environmental Health Perspectives, 2004, v. 112, n. 12, p. A666
By:
- Ball, Catherine;
- Brazma, Alvis;
- Causton, Helen;
- Chervitz, Steve;
- Edgar, Ron;
- Hingamp, Pascal;
- Matese, John C.;
- Parkinson, Helen;
- Quackenbush, John;
- Ringwald, Martin;
- Sansone, Susanna-Assunta;
- Sherlock, Gavin;
- Spellman, Paul;
- Stoeckert, Christian;
- Tateno, Yoshio;
- Taylor, Ronald;
- White, Joseph;
- Winegarden, Neil
Publication type:
Article
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
Published in:
BMC Bioinformatics, 2006, v. 7, p. 489, doi. 10.1186/1471-2105-7-489
By:
- Rayner, Tim F;
- Rocca-Serra, Philippe;
- Spellman, Paul T;
- Causton, Helen C;
- Farne, Anna;
- Holloway, Ele;
- Irizarry, Rafael A;
- Junmin Liu;
- Maier, Donald S;
- Miller, Michael;
- Petersen, Kjell;
- Quackenbush, John;
- Sherlock, Gavin;
- Stoeckert Jr, Christian J;
- White, Joseph;
- Whetzel, Patricia L;
- Wymore, Farrell;
- Parkinson, Helen;
- Sarkans, Ugis;
- Ball, Catherine A
Publication type:
Article
MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data.
Published in:
BMC Bioinformatics, 2005, v. 6, p. 268, doi. 10.1186/1471-2105-6-268
By:
- Navarange, Mahendra;
- Game, Laurence;
- Fowler, Derek;
- Wadekar, Vihar;
- Banks, Helen;
- Cooley, Nicola;
- Rahman, Fatimah;
- Hinshelwood, Justin;
- Broderick, Peter;
- Causton, Helen C.
Publication type:
Article
mRNA degradation in Escherichia coli: a novel factor which impedes the exoribonucleolytic activity of PNPase at stem-loop structures.
Published in:
Molecular Microbiology, 1994, v. 14, n. 4, p. 731, doi. 10.1111/j.1365-2958.1994.tb01310.x
By:
- Causton, Helen;
- Py, Béatrice;
- McLaren, Robert S.;
- Higgins, Christopher F.
Publication type:
Article
A protein complex mediating mRNA degradation in Escherichia coli.
Published in:
Molecular Microbiology, 1994, v. 14, n. 4, p. 717
By:
- Py, Béatrice;
- Causton, Helen;
- Mudd, Elisabeth A.;
- Higgins, Christopher F.
Publication type:
Article
Exploring the use of internal and externalcontrols for assessing microarray technical performance.
Published in:
BMC Research Notes, 2010, v. 3, p. 349, doi. 10.1186/1756-0500-3-349
By:
- Lippa, Katrice A.;
- Duewer, David L.;
- Salit, Marc L.;
- Game, Laurence;
- Causton, Helen C.
Publication type:
Article
Harnessing gene expression to identify the genetic basis of drug resistance.
Published in:
Molecular Systems Biology, 2009, v. 5, n. 1, p. 310, doi. 10.1038/msb.2009.69
By:
- Chen, Bo‐Juen;
- Causton, Helen C;
- Mancenido, Denesy;
- Goddard, Noel L;
- Perlstein, Ethan O;
- Pe'er, Dana
Publication type:
Article
Metabolic rhythms: A framework for coordinating cellular function.
Published in:
European Journal of Neuroscience, 2020, v. 51, n. 1, p. 1, doi. 10.1111/ejn.14296
By:
- Causton, Helen C.
Publication type:
Article
Submission of Microarray Data to Public Repositories.
Published in:
PLoS Biology, 2004, v. 2, n. 9, p. 1276, doi. 10.1371/journal.pbio.0020317
By:
- BaIi, Catherine A.;
- Brazma, Alvis;
- Causton, Helen;
- Chervitz, Steve;
- Edgar, Ron;
- Hingamp, Pascal;
- Matese, John C.;
- Parkinson, Helen;
- Quackenbush, John;
- Ringwald, Martin;
- Sansone, Susanna-assunta;
- Sherlock, Gavin;
- Spellman, Paul;
- Stoeckert, Chris;
- Tateno, Yoshio;
- Taylor, Ronald;
- White, Joseph;
- Winegarden, Neil
Publication type:
Article
Submission of Microarray Data to Public Repositories.
Published in:
PLoS Biology, 2004, v. 2, n. 8, p. 1, doi. 10.1371/journal.pbio.0020317
By:
- Ball, Catherine A;
- Brazma, Alvis;
- Causton, Helen;
- Chervitz, Steve;
- Edgar, Ron;
- Hingamp, Pascal;
- Matese, John C;
- Parkinson, Helen;
- Quackenbush, John;
- Ringwald, Martin;
- Sansone, Susanna-Assunta;
- Sherlock, Gavin;
- Spellman, Paul;
- Stoeckert, Chris;
- Tateno, Yoshio;
- Taylor, Ronald;
- White, Joseph;
- Winegarden, Neil
Publication type:
Article
The MGED Ontology: a resource for semantics-based description of microarray experiments.
Published in:
Bioinformatics, 2006, v. 22, n. 7, p. 866, doi. 10.1093/bioinformatics/btl005
By:
- Patricia L. Whetzel;
- Helen Parkinson;
- Helen C. Causton;
- Liju Fan;
- Jennifer Fostel;
- Gilberto Fragoso;
- Laurence Game;
- Mervi Heiskanen;
- Norman Morrison;
- Philippe Rocca-Serra;
- Susanna-Assunta Sansone;
- Chris Taylor;
- Joseph White;
- Christian J. Stoeckert
Publication type:
Article
An open letter to the scientific journals.
Published in:
Bioinformatics, 2002, v. 18, n. 11, p. 1409, doi. 10.1093/bioinformatics/18.11.1409
By:
- Ball, Catherine A.;
- Sherlock, Gavin;
- Parkinson, Helen;
- Rocca-Sera, Philippe;
- Brooksbank, Catherine;
- Causton, Helen C.;
- Cavalieri, Duccio;
- Gaasterland, Terry;
- Hingamp, Pascal;
- Holstege, Frank;
- Ringwald, Martin;
- Spellman, Paul;
- Stoeckert, Christian J.;
- Stewart, Jason E.;
- Taylor, Ronald;
- Brazma, Alvis;
- Quackenbush, John
Publication type:
Article
Redundant roles for the TFIID and SAGA complexes in global transcription.
Published in:
Nature, 2000, v. 405, n. 6787, p. 701, doi. 10.1038/35015104
By:
- Lee, Tong Ihn;
- Causton, Helen C.;
- Holstege, Frank C.P.;
- Shen, Wu-Cheng;
- Hannett, Nancy;
- Jennings, Ezra G.;
- Winston, Fred;
- Green, Michael R.;
- Young, Richard A.
Publication type:
Article
Eukaryotic cell biology is temporally coordinated to support the energetic demands of protein homeostasis.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18330-x
By:
- O' Neill, John S.;
- Hoyle, Nathaniel P.;
- Robertson, J. Brian;
- Edgar, Rachel S.;
- Beale, Andrew D.;
- Peak-Chew, Sew Y.;
- Day, Jason;
- Costa, Ana S. H.;
- Frezza, Christian;
- Causton, Helen C.
Publication type:
Article

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