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Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07100-0
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- Publication type:
- Article
Are orphan genes protein-coding, prediction artifacts, or non-coding RNAs?
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1102-x
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- Publication type:
- Article
Conserved nuclear hormone receptors controlling a novel plastic trait target fast-evolving genes expressed in a single cell.
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- PLoS Genetics, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pgen.1008687
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- Article
Full mitochondrial and nuclear genome comparison confirms that Onchocerca sp. "Siisa" is Onchocerca ochengi.
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- Parasitology Research, 2018, v. 117, n. 4, p. 1069, doi. 10.1007/s00436-018-5783-0
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- Article
Characterization of Genetic Diversity in the Nematode Pristionchus pacificus from Population-Scale Resequencing Data.
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- Genetics, 2014, v. 196, n. 4, p. 1153, doi. 10.1534/genetics.113.159855
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- Publication type:
- Article
Opposing Forces of A/T-Biased Mutations and G/C-Biased Gene Conversions Shape the Genome of the Nematode Pristionchus pacificus.
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- Genetics, 2014, v. 196, n. 4, p. 1145, doi. 10.1534/genetics.113.159863
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- Publication type:
- Article
Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions.
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- Nucleic Acids Research, 2011, v. 39, n. 7, p. 2492
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- Publication type:
- Article
Comparative transcriptomics of the nematode gut identifies global shifts in feeding mode and pathogen susceptibility.
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- BMC Research Notes, 2016, v. 9, p. 1, doi. 10.1186/s13104-016-1886-9
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- Publication type:
- Article
Promiscuous and Depolarization-Induced Immediate-Early Response Genes Are Induced by Mechanical Strain of Osteoblasts.
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- Journal of Bone & Mineral Research, 2009, v. 24, n. 7, p. 1247, doi. 10.1359/JBMR.090206
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- Publication type:
- Article
Identity-by-descent filtering of exome sequence data identifies PIGV mutations in hyperphosphatasia mental retardation syndrome.
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- Nature Genetics, 2010, v. 42, n. 10, p. 827, doi. 10.1038/ng.653
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- Publication type:
- Article
MutationTaster evaluates disease-causing potential of sequence alterations.
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- 2010
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- Publication type:
- Letter
The community-curated Pristionchus pacificus genome facilitates automated gene annotation improvement in related nematodes.
- Published in:
- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07529-x
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- Publication type:
- Article
Microevolution of Duplications and Deletions and Their Impact on Gene Expression in the Nematode Pristionchus pacificus.
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- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0131136
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- Publication type:
- Article
CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes.
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- PLoS ONE, 2010, v. 5, n. 1, p. 1, doi. 10.1371/journal.pone.0008861
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- Publication type:
- Article
Gene inactivation using the CRISPR/Cas9 system in the nematode Pristionchus pacificus.
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- Development Genes & Evolution, 2015, v. 225, n. 1, p. 55, doi. 10.1007/s00427-014-0486-8
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- Publication type:
- Article
Strongyloides stercoralis genotyping in a human population in southwestern Iran.
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- Parasites & Vectors, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13071-023-06103-6
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- Publication type:
- Article
Spatial Transcriptomics of Nematodes Identifies Sperm Cells as a Source of Genomic Novelty and Rapid Evolution.
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- Molecular Biology & Evolution, 2021, v. 38, n. 1, p. 229, doi. 10.1093/molbev/msaa207
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- Publication type:
- Article
Genomic Profiles of Diversification and Genotype–Phenotype Association in Island Nematode Lineages.
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- Molecular Biology & Evolution, 2016, v. 33, n. 9, p. 2257, doi. 10.1093/molbev/msw093
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- Publication type:
- Article
Crowdsourcing and the feasibility of manual gene annotation: A pilot study in the nematode Pristionchus pacificus.
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- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-55359-5
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- Publication type:
- Article
The improved genome of the nematode Parapristionchus giblindavisi provides insights into lineage-specific gene family evolution.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 10, p. 1, doi. 10.1093/g3journal/jkac215
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- Publication type:
- Article
De Novo, Divergence, and Mixed Origin Contribute to the Emergence of Orphan Genes in Pristionchus Nematodes.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 7, p. 2277, doi. 10.1534/g3.119.400326
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- Publication type:
- Article
Characterization of a non-sexual population of Strongyloides stercoralis with hybrid 18S rDNA haplotypes in Guangxi, Southern China.
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- PLoS Neglected Tropical Diseases, 2019, v. 13, n. 5, p. 1, doi. 10.1371/journal.pntd.0007396
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- Publication type:
- Article
Thousands of Pristionchus pacificus orphan genes were integrated into developmental networks that respond to diverse environmental microbiota.
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- PLoS Genetics, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pgen.1010832
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- Publication type:
- Article
Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes borbonicus on La Réunion Island.
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- Environmental Microbiology, 2017, v. 19, n. 4, p. 1476, doi. 10.1111/1462-2920.13697
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- Publication type:
- Article
Chromatin remodelling and antisense-mediated up-regulation of the developmental switch gene eud-1 control predatory feeding plasticity.
- Published in:
- Nature Communications, 2016, v. 7, n. 8, p. 12337, doi. 10.1038/ncomms12337
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- Publication type:
- Article
New Hope: A Hermaphroditic Nematode Enables Analysis of a Recent Whole Genome Duplication Event.
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- Genome Biology & Evolution, 2022, v. 14, n. 12, p. 1, doi. 10.1093/gbe/evac169
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- Publication type:
- Article
Duplications and Positive Selection Drive the Evolution of Parasitism-Associated Gene Families in the Nematode Strongyloides papillosus.
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- Genome Biology & Evolution, 2017, v. 9, n. 3, p. 790, doi. 10.1093/gbe/evx040
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- Publication type:
- Article
Draft Genome of the Scarab Beetle Oryctes borbonicus on La Réunion Island.
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- Genome Biology & Evolution, 2016, v. 8, n. 7, p. 2093, doi. 10.1093/gbe/evw133
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- Publication type:
- Article
Genomic analysis of Strongyloides stercoralis and Strongyloides fuelleborni in Bangladesh.
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- PLoS Neglected Tropical Diseases, 2024, v. 18, n. 9, p. 1, doi. 10.1371/journal.pntd.0012440
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- Publication type:
- Article
Influence of environmental temperature on mouth‐form plasticity in Pristionchus pacificus acts through daf‐11‐dependent cGMP signaling.
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- Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2023, v. 340, n. 2, p. 214, doi. 10.1002/jez.b.23094
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- Publication type:
- Article
Divergent combinations of cis-regulatory elements control the evolution of phenotypic plasticity.
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- PLoS Biology, 2023, v. 21, n. 8, p. 1, doi. 10.1371/journal.pbio.3002270
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- Publication type:
- Article
A safety mechanism enables tissue-specific resistance to protein aggregation during aging in C. elegans.
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- PLoS Biology, 2023, v. 21, n. 9, p. 1, doi. 10.1371/journal.pbio.3002284
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- Publication type:
- Article
Neurofibromin (Nf1) is required for skeletal muscle development.
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- Human Molecular Genetics, 2011, v. 20, n. 14, p. 2697, doi. 10.1093/hmg/ddr149
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- Publication type:
- Article
Life History Responses and Gene Expression Profiles of the Nematode Pristionchus pacificus Cultured on Cryptococcus Yeasts.
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- PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0164881
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- Publication type:
- Article
The Orphan Gene dauerless Regulates Dauer Development and Intraspecific Competition in Nematodes by Copy Number Variation.
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- PLoS Genetics, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.pgen.1005146
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- Publication type:
- Article
DAF‐19/RFX controls ciliogenesis and influences oxygen‐induced social behaviors in Pristionchus pacificus.
- Published in:
- Evolution & Development, 2018, v. 20, n. 6, p. 233, doi. 10.1111/ede.12271
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- Publication type:
- Article
FGFR3 is a target of the homeobox transcription factor SHOX in limb development.
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- Human Molecular Genetics, 2011, v. 20, n. 8, p. 1524, doi. 10.1093/hmg/ddr030
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- Publication type:
- Article
Culture-based analysis of Pristionchus-associated microbiota from beetles and figs for studying nematode-bacterial interactions.
- Published in:
- PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0198018
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- Publication type:
- Article
Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-014-1205-6
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- Publication type:
- Article
2Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes.
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- BMC Genomics, 2015, v. 16, n. 1, p. 291, doi. 10.1186/s12864-014-1205-6
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- Publication type:
- Article
Rhabditophanes diutinus a parthenogenetic clade IV nematode with dauer larvae.
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- PLoS Pathogens, 2020, v. 16, n. 12, p. 1, doi. 10.1371/journal.ppat.1009113
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- Publication type:
- Article
Identity-by-descent filtering of exome sequence data for disease–gene identification in autosomal recessive disorders.
- Published in:
- Bioinformatics, 2011, v. 27, n. 6, p. 829, doi. 10.1093/bioinformatics/btr022
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- Publication type:
- Article
Microindel detection in short-read sequence data.
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- Bioinformatics, 2010, v. 26, n. 6, p. 722, doi. 10.1093/bioinformatics/btq027
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- Publication type:
- Article
Adaptation to environmental temperature in divergent clades of the nematode Pristionchus pacificus.
- Published in:
- Evolution, 2022, v. 76, n. 8, p. 1660, doi. 10.1111/evo.14520
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- Publication type:
- Article
Genomic studies on Strongyloides stercoralis in northern and western Thailand.
- Published in:
- Parasites & Vectors, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13071-020-04115-0
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- Publication type:
- Article
Analysis of repeat elements in the Pristionchus pacificus genome reveals an ancient invasion by horizontally transferred transposons.
- Published in:
- BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08731-1
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- Publication type:
- Article
Variation in rates of spontaneous male production within the nematode species Pristionchus pacificus supports an adaptive role for males and outcrossing.
- Published in:
- BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0873-7
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- Publication type:
- Article
First insights into the nature and evolution of antisense transcription in nematodes.
- Published in:
- BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0740-y
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- Publication type:
- Article
Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus.
- Published in:
- BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0466-2
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- Publication type:
- Article