Found: 44
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Dynamical Boolean Modeling of Immunogenic Cell Death.
- Published in:
- Frontiers in Physiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fphys.2020.590479
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- Article
DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts.
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- BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0189-4
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- Article
NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-100
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- Article
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-18
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- Article
Continuous time boolean modeling for biological signaling: application of Gillespie algorithm.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 116, doi. 10.1186/1752-0509-6-116
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- Article
NaviCell Web Service for network-based data visualization.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W560, doi. 10.1093/nar/gkv450
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- Article
The Systems Biology Graphical Notation.
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- Nature Biotechnology, 2009, v. 27, n. 8, p. 735, doi. 10.1038/nbt.1558
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- Article
Erratum: The Systems Biology Graphical Notation.
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- 2009
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- Correction Notice
Multiscale model of the different modes of cancer cell invasion.
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- Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad374
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- Article
Computational modelling in health and disease: highlights of the 6th annual SysMod meeting.
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- Bioinformatics, 2022, v. 38, n. 21, p. 4990, doi. 10.1093/bioinformatics/btac609
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- Article
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.
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- Bioinformatics, 2021, v. 37, n. 21, p. 3702, doi. 10.1093/bioinformatics/btab229
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- Article
On Circuit Functionality in Boolean Networks.
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- Bulletin of Mathematical Biology, 2013, v. 75, n. 6, p. 906, doi. 10.1007/s11538-013-9829-2
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- Article
Patient-specific Boolean models of signalling networks guide personalised treatments.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.72626
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- Article
ROMA: Representation and Quantification of Module Activity from Target Expression Data.
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- Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00018
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- Article
Modelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response.
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- Cancers, 2020, v. 12, n. 12, p. 3600, doi. 10.3390/cancers12123600
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- Article
Comprehensive Map of the Regulated Cell Death Signaling Network: A Powerful Analytical Tool for Studying Diseases.
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- Cancers, 2020, v. 12, n. 4, p. 990, doi. 10.3390/cancers12040990
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- Article
Qualitative dynamics semantics for SBGN process description.
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- BMC Systems Biology, 2016, v. 10, p. 1, doi. 10.1186/s12918-016-0285-0
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- Publication type:
- Article
From CFTR to a CF signalling network: a systems biology approach to study Cystic Fibrosis.
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- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10752-x
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- Article
Integrative proteomic and phosphoproteomic profiling of prostate cell lines.
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- PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0224148
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- Article
Exact solving and sensitivity analysis of stochastic continuous time Boolean models.
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- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03548-9
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- Publication type:
- Article
A comprehensive modular map of molecular interactions in RB/E2F pathway.
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- Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.7
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- Article
Dynamical modeling of syncytial mitotic cycles in Drosophila embryos.
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- Molecular Systems Biology, 2007, v. 3, n. 1, p. 131, doi. 10.1038/msb4100171
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- Article
Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.
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- PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004571
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- Article
Integrative Multi-omics Module Network Inference with Lemon-Tree.
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- PLoS Computational Biology, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pcbi.1003983
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- Article
Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision.
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- PLoS Computational Biology, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003286
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- Article
Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement.
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- PLoS Computational Biology, 2010, v. 6, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000702
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- Article
Classification of gene signatures for their information value and functional redundancy.
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- NPJ Systems Biology & Applications, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41540-017-0038-8
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- Article
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.
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- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac212
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- Article
Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
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- Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1848, doi. 10.1093/bib/bbaa046
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- Article
Conceptual and computational framework for logical modelling of biological networks deregulated in diseases.
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- Briefings in Bioinformatics, 2019, p. 1238, doi. 10.1093/bib/bbx163
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- Article
Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers.
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- PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007900
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- Article
Logic Modeling in Quantitative Systems Pharmacology.
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- CPT: Pharmacometrics & Systems Pharmacology, 2017, v. 6, n. 8, p. 499, doi. 10.1002/psp4.12225
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- Article
BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
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- Bioinformatics, 2008, v. 24, n. 6, p. 876, doi. 10.1093/bioinformatics/btm553
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- Article
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
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- Nucleic Acids Research, 2022, v. 50, n. W1, p. W108, doi. 10.1093/nar/gkac331
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- Publication type:
- Article
Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients.
- Published in:
- Frontiers in Physiology, 2019, p. N.PAG, doi. 10.3389/fphys.2018.01965
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- Article
Predicting genetic interactions from Boolean models of biological networks.
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- Integrative Biology, 2015, v. 7, n. 8, p. 921, doi. 10.1039/c5ib00029g
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- Article
scBoolSeq: Linking scRNA-seq statistics and Boolean dynamics.
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- PLoS Computational Biology, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011620
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- Article
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.
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- Bioinformatics, 2019, v. 35, n. 7, p. 1188, doi. 10.1093/bioinformatics/bty766
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- Article
MaBoSS 2.0: an environment for stochastic Boolean modeling.
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- Bioinformatics, 2017, v. 33, n. 14, p. 2226, doi. 10.1093/bioinformatics/btx123
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- Article
Representation and quantification of module activity from omics data with rROMA.
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- NPJ Systems Biology & Applications, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41540-024-00331-x
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- Publication type:
- Article
PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks.
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- NPJ Systems Biology & Applications, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41540-023-00314-4
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- Article
A comprehensive approach to the molecular determinants of lifespan using a Boolean model of geroconversion.
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- Aging Cell, 2016, v. 15, n. 6, p. 1018, doi. 10.1111/acel.12504
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- Article
Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial).
- Published in:
- Frontiers in Physiology, 2018, p. N.PAG, doi. 10.3389/fphys.2018.00787
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- Publication type:
- Article
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks.
- Published in:
- Frontiers in Physiology, 2018, p. N.PAG, doi. 10.3389/fphys.2018.00680
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- Article