Found: 59
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DeepPPAPredMut: deep ensemble method for predicting the binding affinity change in protein–protein complexes upon mutation.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae309
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- Article
Peptide set test: a peptide-centric strategy to infer differentially expressed proteins.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae270
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- Article
BindingSiteDTI: differential-scale binding site modelling for drug–target interaction prediction.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae308
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- Article
greenPipes: an integrated data analysis pipeline for greenCUT&RUN and CUT&RUN genome-localization datasets.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae307
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- Article
DiSMVC: a multi-view graph collaborative learning framework for measuring disease similarity.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae306
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- Article
Correction to: kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.
- Published in:
- 2024
- Publication type:
- Correction Notice
Automated segmentation and recognition of C. elegans whole-body cells.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae324
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- Article
PQSDC: a parallel lossless compressor for quality scores data via sequences partition and run-length prediction mapping.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae323
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- Article
GateMeClass: Gate Mining and Classification of cytometry data.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae322
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- Article
MUSE-XAE: MUtational Signature Extraction with eXplainable AutoEncoder enhances tumour types classification.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae320
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- Article
Genotype sampling for deep-learning assisted experimental mapping of a combinatorially complete fitness landscape.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae317
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- Publication type:
- Article
Pathformer: a biological pathway informed transformer for disease diagnosis and prognosis using multi-omics data.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae316
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- Publication type:
- Article
MultiRNAflow: integrated analysis of temporal RNA-seq data with multiple biological conditions.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae315
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- Publication type:
- Article
fastCCLasso: a fast and efficient algorithm for estimating correlation matrix from compositional data.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae314
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- Publication type:
- Article
Bayesian modelling of time series data (BayModTS)—a FAIR workflow to process sparse and highly variable data.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae312
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- Publication type:
- Article
Parsnp 2.0: scalable core-genome alignment for massive microbial datasets.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae311
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- Publication type:
- Article
GradHC: highly reliable gradual hash-based clustering for DNA storage systems.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae274
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- Publication type:
- Article
metaGWASmanager: a toolbox for an automated workflow from phenotypes to meta-analysis in GWAS consortia.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae294
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- Publication type:
- Article
Peptriever: a Bi-Encoder approach for large-scale protein–peptide binding search.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae303
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- Publication type:
- Article
DeepAVP-TPPred: identification of antiviral peptides using transformed image-based localized descriptors and binary tree growth algorithm.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae305
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- Article
Molecular property prediction based on graph structure learning.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae304
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- Publication type:
- Article
methscore: a comprehensive R function for DNA methylation-based health predictors.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae302
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- Publication type:
- Article
Prioritizing genomic variants through neuro-symbolic, knowledge-enhanced learning.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae301
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- Publication type:
- Article
Scalable integration of multiomic single-cell data using generative adversarial networks.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae300
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- Publication type:
- Article
PlasCAT: Plasmid Cloud Assembly Tool.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae299
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- Publication type:
- Article
MEG-PPIS: a fast protein–protein interaction site prediction method based on multi-scale graph information and equivariant graph neural network.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae269
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- Publication type:
- Article
MPH: fast REML for large-scale genome partitioning of quantitative genetic variation.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae298
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- Publication type:
- Article
Integrated convolution and self-attention for improving peptide toxicity prediction.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae297
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- Publication type:
- Article
Chainsaw: protein domain segmentation with fully convolutional neural networks.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae296
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- Publication type:
- Article
SharePro: an accurate and efficient genetic colocalization method accounting for multiple causal signals.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae295
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- Publication type:
- Article
Topological benchmarking of algorithms to infer gene regulatory networks from single-cell RNA-seq data.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae267
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- Article
shinyseg: a web application for flexible cosegregation and sensitivity analysis.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae201
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- Publication type:
- Article
scTPC: a novel semisupervised deep clustering model for scRNA-seq data.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae293
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- Publication type:
- Article
RecGraph: recombination-aware alignment of sequences to variation graphs.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae292
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- Publication type:
- Article
Inferring gene regulatory networks from single-cell transcriptomics based on graph embedding.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae291
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- Publication type:
- Article
LMCrot: an enhanced protein crotonylation site predictor by leveraging an interpretable window-level embedding from a transformer-based protein language model.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae290
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- Publication type:
- Article
CopyVAE: a variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae284
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- Publication type:
- Article
CASCC: a co-expression-assisted single-cell RNA-seq data clustering method.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae283
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- Publication type:
- Article
DIMet: an open-source tool for differential analysis of targeted isotope-labeled metabolomics data.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae282
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- Publication type:
- Article
MammalMethylClock R package: software for DNA methylation-based epigenetic clocks in mammals.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae280
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- Publication type:
- Article
CORDAX web server: an online platform for the prediction and 3D visualization of aggregation motifs in protein sequences.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae279
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- Article
For antibody sequence generative modeling, mixture models may be all you need.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae278
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- Publication type:
- Article
Large-scale structure-informed multiple sequence alignment of proteins with SIMSApiper.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae276
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- Publication type:
- Article
BTR: a bioinformatics tool recommendation system.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae275
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- Publication type:
- Article
ITree: a user-driven tool for interactive decision-making with classification trees.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae273
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- Publication type:
- Article
wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae272
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- Article
Revisiting drug–protein interaction prediction: a novel global–local perspective.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae271
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- Publication type:
- Article
SimReadUntil for benchmarking selective sequencing algorithms on ONT devices.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae199
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- Publication type:
- Article
AbLEF: antibody language ensemble fusion for thermodynamically empowered property predictions.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae268
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- Publication type:
- Article
pipesnake: generalized software for the assembly and analysis of phylogenomic datasets from conserved genomic loci.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae195
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- Publication type:
- Article