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A versatile active learning workflow for optimization of genetic and metabolic networks.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31245-z
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- Article
The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32661-x
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- Article
A versatile active learning workflow for optimization of genetic and metabolic networks.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31245-z
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- Publication type:
- Article
Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κB signaling networks.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-45
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- Article
RetroRules: a database of reaction rules for engineering biology.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D1229, doi. 10.1093/nar/gky940
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- Article
SensiPath: computer-aided design of sensing-enabling metabolic pathways.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W226, doi. 10.1093/nar/gkw305
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- Article
XTMS: pathway design in an eXTended metabolic space.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. W1, p. W389, doi. 10.1093/nar/gku362
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- Article
PrecisePrimer: an easy-to-use web server for designing PCR primers for DNA library cloning and DNA shuffling.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. W1, p. W205, doi. 10.1093/nar/gku393
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- Article
Mapping the patent landscape of synthetic biology for fine chemical production pathways.
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- Microbial Biotechnology, 2016, v. 9, n. 5, p. 687, doi. 10.1111/1751-7915.12401
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- Article
Sensitivity Analysis of a Computational Model of the IKK–NF-κB–IκBα–A20 Signal Transduction Network.
- Published in:
- Annals of the New York Academy of Sciences, 2007, v. 1115, p. 221, doi. 10.1196/annals.1407.014
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- Article
Engineering Escherichia coli towards de novo production of gatekeeper (2S)-flavanones: naringenin, pinocembrin, eriodictyol and homoeriodictyol.
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- Synthetic Biology (23977000), 2020, v. 5, n. 1, p. 1, doi. 10.1093/synbio/ysaa012
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- Article
A neural-mechanistic hybrid approach improving the predictive power of genome-scale metabolic models.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40380-0
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- Article
Editorial: Synthetic Biology - applying new paradigms at the interface of fundamental research and innovation.
- Published in:
- Biotechnology Journal, 2011, v. 6, n. 7, p. 766, doi. 10.1002/biot.201100254
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- Article
Engineering antibiotic production and overcoming bacterial resistance.
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- Biotechnology Journal, 2011, v. 6, n. 7, p. 812, doi. 10.1002/biot.201100085
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- Article
Building a minimal and generalizable model of transcription factor–based biosensors: Showcasing flavonoids.
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- Biotechnology & Bioengineering, 2018, v. 115, n. 9, p. 2292, doi. 10.1002/bit.26726
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- Article
Compound toxicity screening and structure-activity relationship modeling in Escherichia coli.
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- Biotechnology & Bioengineering, 2012, v. 109, n. 3, p. 846, doi. 10.1002/bit.24356
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- Article
Metabolic perceptrons for neural computing in biological systems.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11889-0
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- Publication type:
- Article
Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09722-9
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- Article
OMG: Open Molecule Generator.
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- Journal of Cheminformatics, 2012, v. 4, n. 1, p. 21, doi. 10.1186/1758-2946-4-21
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- Article
Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.
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- Journal of Cheminformatics, 2017, v. 9, n. 1, p. 1, doi. 10.1186/s13321-017-0252-9
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- Article
Reverse engineering chemical structures from molecular descriptors: how many solutions?
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- Journal of Computer-Aided Molecular Design, 2005, v. 19, n. 9/10, p. 637, doi. 10.1007/s10822-005-9007-1
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- Article
SYNBIOCHEM - a SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals.
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- Biochemical Society Transactions, 2016, v. 44, n. 3, p. 675, doi. 10.1042/BST20160009
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- Article
Genome scale enzyme metabolite and drug target interaction predictions using the signature molecular descriptor.
- Published in:
- Bioinformatics, 2008, v. 24, n. 2, p. 225, doi. 10.1093/bioinformatics/btm580
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- Article
Boolean dynamics of genetic regulatory networks inferred from microarray time series data.
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- Bioinformatics, 2007, v. 23, n. 7, p. 866, doi. 10.1093/bioinformatics/btm021
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- Article
Stochastic generator of chemical structure. 4. Building polymeric systems with specified properties.
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- Journal of Computational Chemistry, 2001, v. 22, n. 6, p. 580, doi. 10.1002/jcc.1030
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- Article
Optimising protein synthesis in cell‐free systems, a review.
- Published in:
- Engineering Biology, 2021, v. 5, n. 1, p. 10, doi. 10.1049/enb2.12004
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- Article
Disparate data fusion for protein phosphorylation prediction.
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- Annals of Operations Research, 2010, v. 174, n. 1, p. 219, doi. 10.1007/s10479-008-0347-9
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- Article
Microbial Genes for a Circular and Sustainable Bio-PET Economy.
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- Genes, 2019, v. 10, n. 5, p. 373, doi. 10.3390/genes10050373
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- Article
Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering.
- Published in:
- Biotechnology Journal, 2014, v. 9, n. 11, p. 1446, doi. 10.1002/biot.201400055
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- Article
Optimal bundling of transmembrane helices using sparse distance constraints.
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- Protein Science: A Publication of the Protein Society, 2004, v. 13, n. 10, p. 2613, doi. 10.1110/ps.04781504
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- Article
Exploring the conformational space of membrane protein folds matching distance constraints.
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- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 8, p. 1750, doi. 10.1110/ps.0305003
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- Article
Systems chemical biology.
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- 2007
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- Publication type:
- Editorial
PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts.
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- Bioinformatics, 2018, v. 34, n. 13, p. 2327, doi. 10.1093/bioinformatics/bty105
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- Article
Selenzyme: enzyme selection tool for pathway design.
- Published in:
- Bioinformatics, 2018, v. 34, n. 12, p. 2153, doi. 10.1093/bioinformatics/bty065
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- Article
Molecular signatures-based prediction of enzyme promiscuity.
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- Bioinformatics, 2010, v. 26, n. 16, p. 2012, doi. 10.1093/bioinformatics/btq317
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- Publication type:
- Article
Large scale active-learning-guided exploration for in vitro protein production optimization.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15798-5
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- Article
biochem4j: Integrated and extensible biochemical knowledge through graph databases.
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- PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0179130
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- Article