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Deciphering evolution of immune recognition in antibodies.
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- BMC Structural Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12900-018-0096-1
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- Article
Modeling holo-ACP:DH and holo-ACP:KR complexes of modular polyketide synthases: a docking and molecular dynamics study.
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- BMC Structural Biology, 2012, v. 12, n. 1, p. 10, doi. 10.1186/1472-6807-12-10
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- Article
RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W80, doi. 10.1093/nar/gkx408
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- Article
SBSPKSv2: structure-based sequence analysis of polyketide synthases and non-ribosomal peptide synthetases.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W72, doi. 10.1093/nar/gkx344
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- Article
SBSPKS: structure based sequence analysis of polyketide synthases.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W487, doi. 10.1093/nar/gkq340
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- Article
RegAnalyst: a web interface for the analysis of regulatory motifs, networks and pathways.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W193, doi. 10.1093/nar/gkp388
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- Article
MODPROPEP: a program for knowledge-based modeling of protein–peptide complexes.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W549, doi. 10.1093/nar/gkm266
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- Article
PAR-3D: a server to predict protein active site residues.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W503, doi. 10.1093/nar/gkm252
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- Publication type:
- Article
A machine learning-based method for prediction of macrocyclization patterns of polyketides and non-ribosomal peptides.
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- Bioinformatics, 2021, v. 37, n. 5, p. 603, doi. 10.1093/bioinformatics/btaa851
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- Article
Understanding the molecular basis of substrate binding specificity of PTB domains.
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- Scientific Reports, 2016, p. 31418, doi. 10.1038/srep31418
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- Article
An <i>In Silico</i> Analysis of the Binding Modes and Binding Affinities of Small Molecule Modulators of PDZ-Peptide Interactions.
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- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071340
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- Article
Two Functionally Distinctive Phosphopantetheinyl Transferases from Amoeba Dictyostelium discoideum.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024262
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- Article
Correlation between knowledge-based and detailed atomic potentials: Application to the unfolding of the GCN4 leucine zipper.
- Published in:
- Proteins, 1999, v. 35, n. 4, p. 447, doi. 10.1002/(SICI)1097-0134(19990601)35:4<447::AID-PROT8>3.0.CO;2-O
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- Article
LipidII interaction with specific residues of Mycobacterium tuberculosis PknB extracytoplasmic domain governs its optimal activation.
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- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09223-9
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- Article
Development of a Novel Pharmacophore Model Guided by the Ensemble of Waters and Small Molecule Fragments Bound to SARS‐CoV‐2 Main Protease.
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- Molecular Informatics, 2022, v. 41, n. 2, p. 1, doi. 10.1002/minf.202100178
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- Article
novPTMenzy: a database for enzymes involved in novel post-translational modifications.
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- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav039
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- Article
Genetic, biosynthetic and functional versatility of polyketide synthases.
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- Current Science (00113891), 2012, v. 102, n. 2, p. 277
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- Article
Genome scale prediction of substrate specificityfor acyl adenylate superfamily of enzymes basedon active site residue profiles.
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- BMC Bioinformatics, 2010, v. 11, p. 57, doi. 10.1186/1471-2105-11-57
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- Article
Conformational polymorphism in telomeric structures: Loop orientation and interloop pairing in d(G<sub>4</sub>T<sub> n</sub>G<sub>4</sub>).
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- Biopolymers, 1994, v. 34, n. 9, p. 1187, doi. 10.1002/bip.360340908
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- Article
A hepatocyte-specific transcriptional program driven by Rela and Stat3 exacerbates experimental colitis in mice by modulating bile synthesis.
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- eLife, 2024, p. 1, doi. 10.7554/eLife.93273
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- Article
SEARCHGTr: a program for analysis of glycosyltransferases involved in glycosylation of secondary metabolites.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w220, doi. 10.1093/nar/gki449
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- Article
NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w405, doi. 10.1093/nar/gkh359
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- Article
SEARCHPKS: a program for detection and analysis of polyketide synthase domains.
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- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3654, doi. 10.1093/nar/gkg607
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- Article
Novel insights into the regulation of malarial calcium-dependent protein kinase 1.
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- FASEB Journal, 2012, v. 26, n. 8, p. 3212, doi. 10.1096/fj.12-203877
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- Article
Towards Prediction of Metabolic Products of Polyketide Synthases: An In Silico Analysis.
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- PLoS Computational Biology, 2009, v. 5, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000351
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- Article
ProsmORF-pred: a machine learning-based method for the identification of small ORFs in prokaryotic genomes.
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- Briefings in Bioinformatics, 2023, v. 24, n. 3, p. 1, doi. 10.1093/bib/bbad101
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- Article
Pf-Phospho: a machine learning-based phosphorylation sites prediction tool for Plasmodium proteins.
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- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac249
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- Article
SMMPPI: a machine learning-based approach for prediction of modulators of protein–protein interactions and its application for identification of novel inhibitors for RBD:hACE2 interactions in SARS-CoV-2.
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- Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab111
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- Article
Genome-Wide Search for Eliminylating Domains Reveals Novel Function for BLES03-Like Proteins.
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- Genome Biology & Evolution, 2014, v. 6, n. 8, p. 2017, doi. 10.1093/gbe/evu161
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- Article
corrigendum: Enzymic activation and transfer of fatty acids and acyl-adenylates in mycobacteria.
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- 2004
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- Correction Notice
erratum: Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria.
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- 2004
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- Correction Notice
Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria.
- Published in:
- Nature, 2004, v. 428, n. 6981, p. 441, doi. 10.1038/nature02384
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- Article
Novel Intermolecular Iterative Mechanism for Biosynthesis of Mycoketide Catalyzed by a Bimodular Polyketide Synthase.
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- PLoS Biology, 2008, v. 6, n. 7, p. e163, doi. 10.1371/journal.pbio.0060163
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- Article
In silico identification of AMPylating enzymes and study of their divergent evolution.
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- Scientific Reports, 2015, p. 10804, doi. 10.1038/srep10804
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- Article
modPDZpep: a web resource for structure based analysis of human PDZ-mediated interaction networks.
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- Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0151-4
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- Article
Role of glycosylation in structure and stability of Erythrina corallodendron lectin (EcorL): A molecular dynamics study.
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- Protein Science: A Publication of the Protein Society, 2011, v. 20, n. 3, p. 465, doi. 10.1002/pro.578
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- Article
Mechanistic and functional insights into fatty acid activation in Mycobacterium tuberculosis.
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- Nature Chemical Biology, 2009, v. 5, n. 3, p. 166, doi. 10.1038/nchembio.143
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- Article
Deciphering kinase–substrate relationships by analysis of domain-specific phosphorylation network.
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- Bioinformatics, 2014, v. 30, n. 12, p. 1730, doi. 10.1093/bioinformatics/btu112
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- Article
Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials.
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- Bioinformatics, 2010, v. 26, n. 2, p. 189, doi. 10.1093/bioinformatics/btp633
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- Article
De novo predictions of the quaternary structure of leucine zippers and other coiled coils.
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- International Journal of Quantum Chemistry, 1999, v. 75, n. 3, p. 165, doi. 10.1002/(SICI)1097-461X(1999)75:3<165::AID-QUA6>3.0.CO;2-Q
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- Article