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A chromosome‐scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes.
Published in:
Plant Biotechnology Journal, 2021, v. 19, n. 3, p. 602, doi. 10.1111/pbi.13492
By:
- Paritosh, Kumar;
- Yadava, Satish Kumar;
- Singh, Priyansha;
- Bhayana, Latika;
- Mukhopadhyay, Arundhati;
- Gupta, Vibha;
- Bisht, Naveen Chandra;
- Zhang, Jianwei;
- Kudrna, David A.;
- Copetti, Dario;
- Wing, Rod A.;
- Reddy Lachagari, Vijaya Bhasker;
- Pradhan, Akshay Kumar;
- Pental, Deepak
Publication type:
Article
Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice.
Published in:
Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-37004-y
By:
- Zhou, Yong;
- Yu, Zhichao;
- Chebotarov, Dmytro;
- Chougule, Kapeel;
- Lu, Zhenyuan;
- Rivera, Luis F.;
- Kathiresan, Nagarajan;
- Al-Bader, Noor;
- Mohammed, Nahed;
- Alsantely, Aseel;
- Mussurova, Saule;
- Santos, João;
- Thimma, Manjula;
- Troukhan, Maxim;
- Fornasiero, Alice;
- Green, Carl D.;
- Copetti, Dario;
- Kudrna, David;
- Llaca, Victor;
- Lorieux, Mathias
Publication type:
Article
Genome sequence of the model rice variety KitaakeX.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6262-4
By:
- Jain, Rashmi;
- Jenkins, Jerry;
- Shu, Shengqiang;
- Chern, Mawsheng;
- Martin, Joel A.;
- Copetti, Dario;
- Duong, Phat Q.;
- Pham, Nikki T.;
- Kudrna, David A.;
- Talag, Jayson;
- Schackwitz, Wendy S.;
- Lipzen, Anna M.;
- Dilworth, David;
- Bauer, Diane;
- Grimwood, Jane;
- Nelson, Catherine R.;
- Xing, Feng;
- Xie, Weibo;
- Barry, Kerrie W.;
- Wing, Rod A.
Publication type:
Article
RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection.
Published in:
Molecular Genetics & Genomics, 2007, v. 278, n. 4, p. 421, doi. 10.1007/s00438-007-0260-y
By:
- Venu, R. C.;
- Jia, Yulin;
- Gowda, Malali;
- Jia, Melissa H.;
- Jantasuriyarat, Chatchawan;
- Stahlberg, Eric;
- Li, Huameng;
- Rhineheart, Andrew;
- Boddhireddy, Prashanth;
- Singh, Pratibha;
- Rutger, Neil;
- Kudrna, David;
- Wing, Rod;
- Nelson, James C.;
- Wang, Guo-Liang
Publication type:
Article
Highly accurate long-read HiFi sequencing data for five complex genomes.
Published in:
Scientific Data, 2020, v. 7, n. 1, p. N.PAG, doi. 10.1038/s41597-020-00743-4
By:
- Hon, Ting;
- Mars, Kristin;
- Young, Greg;
- Tsai, Yu-Chih;
- Karalius, Joseph W.;
- Landolin, Jane M.;
- Maurer, Nicholas;
- Kudrna, David;
- Hardigan, Michael A.;
- Steiner, Cynthia C.;
- Knapp, Steven J.;
- Ware, Doreen;
- Shapiro, Beth;
- Peluso, Paul;
- Rank, David R.
Publication type:
Article
Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping.
Published in:
Genetics, 2014, v. 196, n. 4, p. 937, doi. 10.1534/genetics.113.159970
By:
- Xiaoming Wang;
- Kudrna, David A.;
- Yonglong Pan;
- Hao Wang;
- Lin Liu;
- Haiyan Lin;
- Jianwei Zhang;
- Xiang Song;
- Goicoechea, Jose Luis;
- Wing, Rod A.;
- Qifa Zhang;
- Meizhong Luo
Publication type:
Article
The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research.
Published in:
Genetics, 2011, v. 187, n. 4, p. 1023, doi. 10.1534/genetics.111.126540
By:
- Xiang Song;
- Goicoechea, Jose Luis;
- Ammiraju, Jetty S. S.;
- Meizhong Luo;
- Ruifeng He;
- Jinke Lin;
- So-Jeong Lee;
- Sisneros, Nicholas;
- Watts, Tom;
- Kudrna, David A.;
- Golser, Wolfgang;
- Ashley, Elizabeth;
- Collura, Kristi;
- Braidotti, Michele;
- Yeisoo Yu;
- Matzkin, Luciano M.;
- McAllister, Bryant F.;
- Markow, Therese Ann;
- Wing, Rod A.
Publication type:
Article
Knihovna jako potenciální terč kybernetického útoku.
Published in:
Knihovna PLUS, 2021, n. 2, p. 1
By:
- Kudrna, Mgr. David;
- Hudeček, Mgr. Ondřej
Publication type:
Article
Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies.
Published in:
Plant Journal, 2014, v. 77, n. 5, p. 795, doi. 10.1111/tpj.12412
By:
- Pan, Yonglong;
- Deng, Ying;
- Lin, Haiyan;
- Kudrna, David A.;
- Wing, Rod A.;
- Li, Lijia;
- Zhang, Qifa;
- Luo, Meizhong
Publication type:
Article
Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping.
Published in:
Plant Genome, 2021, v. 14, n. 2, p. 1, doi. 10.1002/tpg2.20110
By:
- Li, Huang;
- Hu, Xiao;
- Lovell, John T.;
- Grabowski, Paul P.;
- Mamidi, Sujan;
- Chen, Cindy;
- Amirebrahimi, Mojgan;
- Kahanda, Indika;
- Mumey, Brendan;
- Barry, Kerrie;
- Kudrna, David;
- Schmutz, Jeremy;
- Lachowiec, Jennifer;
- Lu, Chaofu
Publication type:
Article
The Oryza BAC resource: a genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives.
Published in:
Breeding Science, 2010, v. 60, n. 5, p. 536, doi. 10.1270/jsbbs.60.536
By:
- Ammiraju, Jetty S. S.;
- Xiang Song;
- Meizhong Luo;
- Sisneros, Nicholas;
- Angelova, Angelina;
- Kudrna, David;
- Kim, HyeRan;
- Yeisoo Yu;
- Goicoechea, Jose Luis;
- Lorieux, Mathias;
- Kurata, Non;
- Brar, Darshan;
- Ware, Doreen;
- Jackson, Scott;
- Wing, Rod A.
Publication type:
Article
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
Published in:
BMC Plant Biology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2229-13-27
By:
- Hyun Jo Koo;
- McDowell, Eric T.;
- Xiaoqiang Ma;
- Greer, Kevin A.;
- Kapteyn, Jeremy;
- Zhengzhi Xie;
- Descour, Anne;
- HyeRan Kim;
- Yeisoo Yu;
- Kudrna, David;
- Wing, Rod A.;
- Soderlund, Carol A.;
- Gang, David R.
Publication type:
Article
Stable transformation of barley callus using biolistic particle bombardment and the phosphinothricin acetyltransferase ( bar) gene.
Published in:
Plant Cell, Tissue & Organ Culture, 1995, v. 40, n. 3, p. 243, doi. 10.1007/BF00048130
By:
- Stiff, Carol;
- Kilian, Andrzej;
- Zhou, Huaping;
- Kudrna, David;
- Kleinhofs, Andris
Publication type:
Article
Genome-wide association mapping of date palm fruit traits.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12604-9
By:
- Hazzouri, Khaled M.;
- Gros-Balthazard, Muriel;
- Flowers, Jonathan M.;
- Copetti, Dario;
- Lemansour, Alain;
- Lebrun, Marc;
- Masmoudi, Khaled;
- Ferrand, Sylvie;
- Dhar, Michael I.;
- Fresquez, Zoë A.;
- Rosas, Ulises;
- Zhang, Jianwei;
- Talag, Jayson;
- Lee, Seunghee;
- Kudrna, David;
- Powell, Robyn F.;
- Leitch, Ilia J.;
- Krueger, Robert R.;
- Wing, Rod A.;
- Amiri, Khaled M. A.
Publication type:
Article
Kam čert nemůže, tam nastrčí makro.
Published in:
Duha, 2022, p. 38
By:
- Kudrna, David
Publication type:
Article
On-line kurz digitální stopa.
Published in:
Duha, 2019, n. 4, p. 12
By:
- Kudrna, David
Publication type:
Article
Evolution of a Complex Locus for Terpene Biosynthesis in Solanum.
Published in:
Plant Cell, 2013, v. 25, n. 6, p. 2022, doi. 10.1105/tpc.113.111013
By:
- Matsuba, Yuki;
- Nguyen, Thuong T.H.;
- Wiegert, Krystle;
- Falara, Vasiliki;
- Gonzales-Vigil, Eliana;
- Leong, Bryan;
- Schäfer, Petra;
- Kudrna, David;
- Wing, Rod A.;
- Bolger, Anthony M.;
- Usadel, Björn;
- Tissier, Alain;
- Fernie, Alisdair R.;
- Barry, Cornelius S.;
- Pichersky, Eran
Publication type:
Article
Whole‐genome sequencing of allotetraploid bermudagrass reveals the origin of Cynodon and candidate genes for salt tolerance.
Published in:
Plant Journal, 2024, v. 118, n. 6, p. 2068, doi. 10.1111/tpj.16729
By:
- Wang, Huan;
- Fang, Tilin;
- Li, Xiaoning;
- Xie, Yan;
- Wang, Wei;
- Hu, Tao;
- Kudrna, David;
- Amombo, Erick;
- Yin, Yanling;
- Fan, Shugao;
- Gong, Zhiyun;
- Huang, Yicheng;
- Xia, Chunjiao;
- Zhang, Jianwei;
- Wu, Yanqi;
- Fu, Jinmin
Publication type:
Article
Informační zvyky uživatelů informačního systému Masarykovy univerzity: průzkum mezi studenty informačních studií a knihovnictví.
Published in:
ProInflow, 2017, v. 9, n. 1, p. 56, doi. 10.5817/proin2017-1-5
By:
- Kudrna, David;
- Pojezná, Tereza;
- Eliáš, Lukáš;
- Svinka, Martin;
- Lorenz, Michal
Publication type:
Article
Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels.
Published in:
Genome Biology & Evolution, 2020, v. 12, n. 4, p. 413, doi. 10.1093/gbe/evaa037
By:
- Shenton, Matt;
- Kobayashi, Masaaki;
- Terashima, Shin;
- Ohyanagi, Hajime;
- Copetti, Dario;
- Hernández-Hernández, Tania;
- Zhang, Jianwei;
- Ohmido, Nobuko;
- Fujita, Masahiro;
- Toyoda, Atsushi;
- Ikawa, Hiroshi;
- Fujiyama, Asao;
- Furuumi, Hiroyasu;
- Miyabayashi, Toshie;
- Kubo, Takahiko;
- Kudrna, David;
- Wing, Rod;
- Yano, Kentaro;
- Nonomura, Ken-Ichi;
- Sato, Yutaka
Publication type:
Article
Molecular marker-assisted selection for enhanced yield in malting barley.
Published in:
Molecular Breeding, 2004, v. 14, n. 4, p. 463, doi. 10.1007/s11032-005-0903-9
By:
- Schmierer, Deric A.;
- Kandemir, Nejdet;
- Kudrna, David A.;
- Jones, Berne L.;
- Ullrich, Steven E.;
- Kleinhofs, Andris
Publication type:
Article
Oryza glumaepatula: A wild relative to improve drought tolerance in cultivated rice.
Published in:
Plant Physiology, 2023, v. 193, n. 4, p. 2381, doi. 10.1093/plphys/kiad485
By:
- Prakash, Parthiban Thathapalli;
- Chebotarov, Dmytro;
- Jianwei Zhang;
- Kudrna, David A.;
- Torres, Rolando O.;
- Natividad, Mignon A.;
- Quintana, Marinell R.;
- Jiaming Song;
- Maldonado, Carlos E.;
- Lou Hechanova, Sherry;
- Jena, Kshirod;
- Wing, Rod A.;
- Henry, Amelia
Publication type:
Article
Detailed Analysis of a Contiguous 22-Mb Region of the Maize Genome.
Published in:
PLoS Genetics, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pgen.1000728
By:
- Fusheng Wei;
- Stein, Joshua C.;
- Chengzhi Liang;
- Jianwei Zhang;
- Fulton, Robert S.;
- Baucom, Regina S.;
- de Paoli, Emanuele;
- Shiguo Zhou;
- Lixing Yang;
- Yujun Han;
- Pasternak, Shiran;
- Narechania, Apurva;
- Lifang Zhang;
- Cheng-Ting Yeh;
- Kai Ying;
- Nagel, Dawn H.;
- Collura, Kristi;
- Kudrna, David;
- Currie, Jennifer;
- Jinke Lin
Publication type:
Article
The Physical and Genetic Framework of the Maize B73 Genome.
Published in:
PLoS Genetics, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pgen.1000715
By:
- Fusheng Wei;
- Jianwei Zhang;
- Shiguo Zhou;
- Ruifeng He;
- Schaeffer, Mary;
- Collura, Kristi;
- Kudrna, David;
- Faga, Ben P.;
- Wissotski1, Marina;
- Golser, Wolfgang;
- Rock, Susan M.;
- Graves, Tina A.;
- Fulton, Robert S.;
- Coe, Ed;
- Schnable, Patrick S.;
- Schwartz, David C.;
- Doreen Ware;
- Sandra W. Clifton;
- Wilson, Richard K.;
- Wing, Rod A.
Publication type:
Article
Gapless assembly of maize chromosomes using long-read technologies.
Published in:
Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02029-9
By:
- Liu, Jianing;
- Seetharam, Arun S.;
- Chougule, Kapeel;
- Ou, Shujun;
- Swentowsky, Kyle W.;
- Gent, Jonathan I.;
- Llaca, Victor;
- Woodhouse, Margaret R.;
- Manchanda, Nancy;
- Presting, Gernot G.;
- Kudrna, David A.;
- Alabady, Magdy;
- Hirsch, Candice N.;
- Fengler, Kevin A.;
- Ware, Doreen;
- Michael, Todd P.;
- Hufford, Matthew B.;
- Dawe, R. Kelly
Publication type:
Article
A willow sex chromosome reveals convergent evolution of complex palindromic repeats.
Published in:
Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-1952-4
By:
- Zhou, Ran;
- Macaya-Sanz, David;
- Carlson, Craig H.;
- Schmutz, Jeremy;
- Jenkins, Jerry W.;
- Kudrna, David;
- Sharma, Aditi;
- Sandor, Laura;
- Shu, Shengqiang;
- Barry, Kerrie;
- Tuskan, Gerald A.;
- Ma, Tao;
- Liu, Jianquan;
- Olson, Matthew;
- Smart, Lawrence B.;
- DiFazio, Stephen P.
Publication type:
Article
Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries.
Published in:
BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-137
By:
- Paiva, Jorge AP;
- Prat, Elisa;
- Vautrin, Sonia;
- Santos, Mauro D;
- San-Clemente, Hélène;
- Brommonschenkel, Sérgio;
- Fonseca, Paulo GS;
- Grattapaglia, Dario;
- Song, Xiang;
- Ammiraju, Jetty SS;
- Kudrna, David;
- Wing, Rod A;
- Freitas, Ana T;
- Bergès, Hélène;
- Grima-Pettenati, Jacqueline
Publication type:
Article
Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries.
Published in:
BMC Genomics, 2011, v. 12, n. 1, p. 137, doi. 10.1186/1471-2164-12-137
By:
- Paiva, Jorge A. P.;
- Prat, Elisa;
- Vautrin, Sonia;
- Santos, Mauro D.;
- San-Clemente, Hélène;
- Brommonschenkel, Sérgio;
- Fonseca, Paulo G. S.;
- Grattapaglia, Dario;
- Xiang Song;
- Ammiraju, Jetty S. S.;
- Kudrna, David;
- Wing, Rod A.;
- Freitas, Ana T.;
- Bergès, Hélène;
- Grima-Pettenati, Jacqueline
Publication type:
Article

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