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Mobile Loop in the Active Site of Metallocarboxypeptidases as an Underestimated Determinant of Substrate Specificity.
Published in:
Biochemistry (00062979), 2018, v. 83, n. 12/13, p. 1594, doi. 10.1134/S0006297918120167
By:
- Akparov, V. Kh.;
- Timofeev, V. I.;
- Khaliullin, I. G.;
- Konstantinova, E. G.;
- Kuranova, I. P.;
- Rakitina, T. V.;
- Švedas, V. K.
Publication type:
Article
One-dimensional photonic bound states in the continuum.
Published in:
Communications Physics, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42005-020-0353-z
By:
- Pankin, P. S.;
- Wu, B.-R.;
- Yang, J.-H.;
- Chen, K.-P.;
- Timofeev, I. V.;
- Sadreev, A. F.
Publication type:
Article
Optical properties of nanostructured 2D metal-dielectric photonic crystals with a lattice defect.
Published in:
Optics & Spectroscopy, 2013, v. 115, n. 5, p. 660, doi. 10.1134/S0030400X13110209
By:
- Rudakova, N. V.;
- Timofeev, I. V.;
- Vetrov, S. Ya.
Publication type:
Article
Control of absorption spectrum of a one-dimensional resonant photonic crystal.
Published in:
Optics & Spectroscopy, 2010, v. 109, n. 1, p. 106, doi. 10.1134/S0030400X10070179
By:
- Vetrov, S. Ya.;
- Timofeev, I. V.;
- Avdeeva, A. Yu.
Publication type:
Article
Spectral properties of a one-dimensional resonant photonic crystal.
Published in:
Optics & Spectroscopy, 2009, v. 106, n. 5, p. 757, doi. 10.1134/S0030400X09050233
By:
- Vetrov, S. Ya.;
- Timofeev, I. V.;
- Kutukova, A. Yu.
Publication type:
Article
Induction of the maximum Raman coherence in an extended medium through fractional adiabatic passage.
Published in:
Optics & Spectroscopy, 2006, v. 100, n. 3, p. 433, doi. 10.1134/S0030400X06030210
By:
- Arkhipkin, V. G.;
- Timofeev, I. V.
Publication type:
Article
Inversion in an Extended Three-Level Medium Produced by Adiabatic Population Transfer.
Published in:
Optics & Spectroscopy, 2001, v. 91, n. 5, p. 810, doi. 10.1134/1.1420867
By:
- Arkhipkin, V. G.;
- Timofeev, I. V.
Publication type:
Article
Pollution with Heavy Metals and Metalloids and Ecological Status of Soils in Severobaikal'sk.
Published in:
Eurasian Soil Science, 2022, v. 55, n. 5, p. 587, doi. 10.1134/S1064229322050040
By:
- Kosheleva, N. E.;
- Nikiforova, E. M.;
- Timofeev, I. V.
Publication type:
Article
Investigation of Spectral Properties of Chloroplast Grana System by Effective Medium Theory.
Published in:
Doklady Physics, 2022, v. 67, n. 2, p. 44, doi. 10.1134/S1028335822020033
By:
- Bikbaev, R. G.;
- Timofeev, I. V.;
- Shabanov, V. F.
Publication type:
Article
Tamm Plasmon Polaritons for Light Trapping in Organic Solar Cells.
Published in:
Doklady Physics, 2020, v. 65, n. 5, p. 161, doi. 10.1134/S1028335820050079
By:
- Bikbaev, R. G.;
- Vetrov, S. Ya.;
- Timofeev, I. V.;
- Shabanov, V. F.
Publication type:
Article
Electromagnetically Induced Transparency and Controlling the Time Shape of Laser Pulses.
Published in:
Doklady Physics, 2005, v. 50, n. 4, p. 165, doi. 10.1134/1.1922553
By:
- Arkhipkin, V. G.;
- Timofeev, I. V.
Publication type:
Article
Effect of Temperature on the Stability of the Precursor Cluster of the Thermolysin Crystal.
Published in:
Crystallography Reports, 2024, v. 69, n. 4, p. 577, doi. 10.1134/S1063774524600480
By:
- Kordonskaya, Yu. V.;
- Timofeev, V. I.;
- Marchenkova, M. A.;
- Pisarevsky, Yu. V.;
- Silvestrova, S. Yu.;
- Dyakova, Yu. A.;
- Kovalchuk, M. V.
Publication type:
Article
Structure of Carboxypeptidase T from Thermoactinomyces Vulgaris in Complex with L-Phenyl Lactate.
Published in:
Crystallography Reports, 2024, v. 69, n. 3, p. 318, doi. 10.1134/S1063774524600315
By:
- Akparov, V. Kh.;
- Konstantinova, G. E.;
- Timofeev, V. I.;
- Shevtsov, M. B.;
- Kuranova, I. P.
Publication type:
Article
Search for New Potential T-Cell and B-Cell Epitopes in the Spike Protein of SARS-CoV-2.
Published in:
Crystallography Reports, 2023, v. 68, n. 6, p. 955, doi. 10.1134/S1063774523601089
By:
- Kolesnikov, I. A.;
- Timofeev, V. I.;
- Nikolenko, M. V.;
- Ermakov, A. V.;
- Ivanovsky, A. S.;
- Dyakova, Yu. A.;
- Pisarevsky, Yu. V.;
- Kovalchuk, M. V.
Publication type:
Article
Application of Protein Crystallography and Machine Learning Data for the Development of a Peptide Vaccine against African Swine Fever.
Published in:
Crystallography Reports, 2023, v. 68, n. 6, p. 975, doi. 10.1134/S1063774523601041
By:
- Ivanovsky, A. S.;
- Kolesnikov, I. A.;
- Kordonskaya, Yu. V.;
- Ermakov, A. V.;
- Marchenkova, M. A.;
- Timofeev, V. I.;
- Pisarevsky, Yu. V.;
- Dyakova, Yu. A.;
- Kovalchuk, M. V.
Publication type:
Article
Search for Potential Epitopes in the Envelope Protein of the African Swine Fever Virus.
Published in:
Crystallography Reports, 2023, v. 68, n. 6, p. 967, doi. 10.1134/S1063774523601077
By:
- Kolesnikov, I. A.;
- Timofeev, V. I.;
- Ermakov, A. V.;
- Ivanovsky, A. S.;
- Dyakova, Yu. A.;
- Pisarevsky, Yu. V.;
- Kovalchuk, M. V.
Publication type:
Article
Application of the Crystal Structure of the SARS-CoV-2 Spike Protein for the Development of a Peptide Vaccine against Virus.
Published in:
Crystallography Reports, 2023, v. 68, n. 6, p. 951, doi. 10.1134/S1063774523601065
By:
- Ivanovsky, A. S.;
- Kolesnikov, I. A.;
- Kordonskaya, Yu. V.;
- Ermakov, A. V.;
- Marchenkova, M. A.;
- Timofeev, V. I.;
- Pisarevsky, Yu. V.;
- Dyakova, Yu. A.;
- Kovalchuk, M. V.
Publication type:
Article
Study of the Precrystallization Solution of Lysozyme by Accelerated Molecular Dynamics Simulation.
Published in:
Crystallography Reports, 2023, v. 68, n. 6, p. 947, doi. 10.1134/S1063774523601053
By:
- Ivanovsky, A. S.;
- Garipov, I.;
- Kordonskaya, Yu. V.;
- Timofeev, V. I.;
- Marchenkova, M. A.;
- Pisarevsky, Yu. V.;
- Dyakova, Yu. A.;
- Kovalchuk, M. V.
Publication type:
Article
Preliminary X-ray Study of Crystals Obtained by Co-Crystallization of Hypoxanthine‒Guanine Phosphoribosyltransferase from Escherichia coli and Pyrazine-2-Carboxamide Derivatives.
Published in:
Crystallography Reports, 2023, v. 68, n. 6, p. 852, doi. 10.1134/S1063774523600965
By:
- Abramchik, Y. A.;
- Zayats, E. A.;
- Timofeev, V. I.;
- Shevtsov, M. B.;
- Kostromina, M. A.;
- Fateev, I. V.;
- Yurovskaya, D. O.;
- Karanov, A. A.;
- Konstantinova, I. D.;
- Kuranova, I. P.;
- Esipov, R. S.
Publication type:
Article
The Frequency Spectrum and Energy Content in a Pulse Flux of Terahertz Radiation Generated by a Relativistic Electron Beam in a Plasma Column with Different Density Distributions.
Published in:
Plasma Physics Reports, 2024, v. 50, n. 3, p. 331, doi. 10.1134/S1063780X24600051
By:
- Arzhannikov, A. V.;
- Sinitsky, S. L.;
- Samtsov, D. A.;
- Timofeev, I. V.;
- Sandalov, E. S.;
- Popov, S. S.;
- Atlukhanov, M. G.;
- Makarov, M. A.;
- Kalinin, P. V.;
- Kuklin, K. N.;
- Rovenskikh, A. F.;
- Stepanov, V. D.
Publication type:
Article
Influence of cubic nonlinearity on laser radiation transmission in a photonic crystal with spatially modified media properties.
Published in:
Physica Status Solidi - Rapid Research Letters, 2007, v. 1, n. 3, p. 92, doi. 10.1002/pssr.200600094
By:
- Vetrov, S. Ya.;
- Timofeev, I. V.;
- Shabanov, A. V.
Publication type:
Article
Structural Bioinformatics Study of the Structural Basis of Substrate Specificity of Purine Nucleoside Phosphorylase from Thermus thermophilus.
Published in:
Crystallography Reports, 2023, v. 68, n. 2, p. 280, doi. 10.1134/S1063774523010108
By:
- Garipov, I. F.;
- Timofeev, V. I.;
- Zayats, E. A.;
- Abramchik, Yu. A.;
- Kostromina, M. A.;
- Konstantinova, I. D.;
- Esipov, R. S.
Publication type:
Article
Preparation, Crystallization, and Preliminary X-ray Diffraction Analysis of Recombinant House Dust Mite Allergen Der p 3 from Dermatophagoides pteronyssinus.
Published in:
Crystallography Reports, 2023, v. 68, n. 1, p. 52, doi. 10.1134/S106377452206027X
By:
- Timofeev, V. I.;
- Abramchik, Yu. A.;
- Zhukhlistova, N. E.;
- Mikheeva, O. O.;
- Shevtsov, M. B.;
- Zayats, E. A.;
- Lykoshin, D. D.;
- Kostromina, M. A.;
- Esipov, R. S.;
- Kuranova, I. P.
Publication type:
Article
Comparative Analysis of the Interfaces between Monomers in the Dimers of Bacterial Histone-Like HU Proteins by the MM-GBSA Method.
Published in:
Crystallography Reports, 2022, v. 67, n. 6, p. 897, doi. 10.1134/S1063774522060025
By:
- Agapova, Yu. K.;
- Petrenko, D. E.;
- Timofeev, V. I.;
- Rakitina, T. V.
Publication type:
Article
Modeling of the Interaction of Cytochrome c with Cardiolipin.
Published in:
Crystallography Reports, 2022, v. 67, n. 6, p. 892, doi. 10.1134/S1063774522030257
By:
- Yurchenko, A. A.;
- Korotkova, P. D.;
- Timofeev, V. I.;
- Shumm, A. B.;
- Vladimirov, Yu. A.
Publication type:
Article
Modeling of the Interaction of Cytochrome c with the Lipid Bilayer.
Published in:
Crystallography Reports, 2022, v. 67, n. 4, p. 590, doi. 10.1134/S1063774522030117
By:
- Korotkova, P. D.;
- Yurchenko, A. A.;
- Timofeev, V. I.;
- Podshivalov, D. D.;
- Gusel'nikova, A. R.;
- Shumm, A. B.;
- Vladimirov, Y. A.
Publication type:
Article
Crystallization and Preliminary X-Ray Diffraction Analysis of Recombinant Phosphoribosylpyrophosphate Synthetase I from Thermus thermophilus HB27.
Published in:
Crystallography Reports, 2022, v. 67, n. 4, p. 586, doi. 10.1134/S1063774522040022
By:
- Abramchik, Yu. A.;
- Timofeev, V. I.;
- Zhukhlistova, N. E.;
- Shevtsov, M. B.;
- Fateev, I. V.;
- Kostromina, M. A.;
- Zayats, E. A.;
- Kuranova, I. P.;
- Esipov, R. S.
Publication type:
Article
Study of the Binding Free Energy of Peptide Substrates in the Active Site of Oligopeptidase B from Serratia proteamaculans by the MM-GBSA Method.
Published in:
Crystallography Reports, 2022, v. 67, n. 3, p. 383, doi. 10.1134/S1063774522030154
By:
- Petrenko, D. E.;
- Timofeev, V. I.;
- Karlinsky, D. M.;
- Plashchinskaia, D. D.;
- Mikhailova, A. G.;
- Rakitina, T. V.
Publication type:
Article
Effect of V23Q and K24T Mutations on the Mobility of Atoms in L-Asparaginase from Wolinella succinigenes.
Published in:
Crystallography Reports, 2022, v. 67, n. 2, p. 233, doi. 10.1134/S1063774522020237
By:
- Timofeev, V. I.;
- Zhukhlistova, N. E.;
- Kuranova, I. P.
Publication type:
Article
Early Stage of Structural Changes and Molecular Dynamics of Cytochrome C in an Aqueous Solution Caused by the Addition of Methanol.
Published in:
Crystallography Reports, 2022, v. 67, n. 2, p. 229, doi. 10.1134/S1063774522020079
By:
- Korotkova, P. D.;
- Yurchenko, A. A.;
- Timofeev, V. I.;
- Gusel'nikova, A. R.;
- Vladimirov, G. K.;
- Shumm, A. B.;
- Vladimirov, Y. A.
Publication type:
Article
Erratum to: Effect of the Simulation Box Size and Precipitant Concentration on the Behavior of Tetragonal Lysozyme Dimer.
Published in:
2021
By:
- Kordonskaya, Yu. V.;
- Timofeev, V. I.;
- Dyakova, Yu. A.;
- Marchenkova, M. A.;
- Pisarevsky, Yu. V.;
- Kovalchuk, M. V.
Publication type:
Correction Notice
Modeling of the Complex of the N-Methyl–D-Aspartate (NMDA) Receptor with Lipids of the Postsynaptic Membrane.
Published in:
Crystallography Reports, 2021, v. 66, n. 6, p. 1010, doi. 10.1134/S1063774521060183
By:
- Komolov, A. S.;
- Petrenko, D. E.;
- Timofeev, V. I.
Publication type:
Article
Modeling of the Lipid Bilayer Mimicking the Inner Mitochondrial Membrane.
Published in:
Crystallography Reports, 2021, v. 66, n. 6, p. 1006, doi. 10.1134/S1063774521060432
By:
- Yurchenko, A. A.;
- Korotkova, P. D.;
- Gusel'nikova, A. R.;
- Shumm, A. B.;
- Timofeev, V. I.;
- Vladimirov, Yu. A.
Publication type:
Article
Three-Dimensional Structure of Recombinant Thermophilic Ribokinase from Thermus speсies 2.9 in Complex with Adenosine Diphosphate.
Published in:
Crystallography Reports, 2021, v. 66, n. 5, p. 769, doi. 10.1134/S1063774521050205
By:
- Timofeev, V. I.;
- Abramchik, Yu. A.;
- Muravyova, T. I.;
- Zhukhlistova, N. E.;
- Esipov, R. S.;
- Kuranova, I. P.
Publication type:
Article
Effect of the Simulation Box Size and Precipitant Concentration on the Behavior of Tetragonal Lysozyme Dimer.
Published in:
Crystallography Reports, 2021, v. 66, n. 3, p. 525, doi. 10.1134/S106377452103010X
By:
- Kordonskaya, Yu. V.;
- Timofeev, V. I.;
- Dyakova, Yu. A.;
- Marchenkova, M. A.;
- Pisarevsky, Yu. V.;
- Kovalchuk, M. V.
Publication type:
Article
Preparation, Crystallization, and Preliminary X-Ray Diffraction Study of Mutant Carboxypeptidase T Bearing the Hydrophilized Primary Specificity Pocket.
Published in:
Crystallography Reports, 2021, v. 66, n. 3, p. 476, doi. 10.1134/S1063774521030020
By:
- Akparov, V. Kh.;
- Konstantinova, G. E.;
- Timofeev, V. I.;
- Kuranova, I. P.
Publication type:
Article
Crystallographic Study of Mutants and Complexes of Oligopeptidase B from Serratia proteamaculans.
Published in:
Crystallography Reports, 2020, v. 65, n. 6, p. 909, doi. 10.1134/S1063774520060255
By:
- Petrenko, D. E.;
- Nikolaeva, A. Yu.;
- Lazarenko, V. A.;
- Dorovatovskiy, P. V.;
- Timofeev, V. I.;
- Vlaskina, A. V.;
- Korzhenevskiy, D. A.;
- Mikhailova, A. G.;
- Boyko, K. M.;
- Rakitina, T. V.
Publication type:
Article
Inhibitor Targeting the Interface between Monomers of HU Protein from Spiroplasma melliferum Disrupts Conformational Dynamics and DNA-Binding Properties of the Protein.
Published in:
Crystallography Reports, 2020, v. 65, n. 6, p. 903, doi. 10.1134/S1063774520060048
By:
- Agapova, Yu. K.;
- Altukhov, D. A.;
- Kamashev, D. E.;
- Timofeev, V. I.;
- Smirnova, E. V.;
- Rakitina, T. V.
Publication type:
Article
Preparation, Crystallization, and Preliminary X-Ray Diffraction Study of Mutant Carboxypeptidase T Bearing the Primary Specificity Pocket and the Active-Site Loop of Carboxypeptidase B.
Published in:
Crystallography Reports, 2020, v. 65, n. 6, p. 900, doi. 10.1134/S106377452006005X
By:
- Akparov, V. Kh.;
- Konstantinova, G. E.;
- Timofeev, V. I.;
- Kuranova, I. P.;
- Khaliullin, I. G.
Publication type:
Article
Molecular Dynamics Calculations of the Interaction Energy of Imidazole Glycerol Phosphate Dehydratase from Mycobacterium tuberculosis with Triazole Derivatives.
Published in:
Crystallography Reports, 2020, v. 65, n. 5, p. 755, doi. 10.1134/S1063774520050028
By:
- Agapova, Yu. K.;
- Komolov, A. S.;
- Timofeev, V. I.
Publication type:
Article
Three-Dimensional Structure of Branched-Chain Amino Acid Transaminase from Thermoproteus uzoniensis in Complex with L-Norvaline.
Published in:
Crystallography Reports, 2020, v. 65, n. 5, p. 740, doi. 10.1134/S1063774520040045
By:
- Boyko, K. M.;
- Nikolaeva, A. Yu.;
- Timofeev, V. I.;
- Popov, V. O.;
- Bezsudnova, E. Yu.
Publication type:
Article
Features of Optical Activity in Inorganic and Organic Materials.
Published in:
Crystallography Reports, 2020, v. 65, n. 5, p. 653, doi. 10.1134/S1063774520050077
By:
- Golovina, T. G.;
- Konstantinova, A. F.;
- Timofeev, V. I.
Publication type:
Article
Molecular Packing of a Mutant of L-Asparaginase from Wolinella succinigenes in Two Crystal Modifications.
Published in:
Crystallography Reports, 2020, v. 65, n. 4, p. 586, doi. 10.1134/S1063774520040227
By:
- Timofeev, V. I.;
- Zhukhlistova, N. E.;
- Kuranova, I. P.
Publication type:
Article
Screening of Conditions that Facilitate Crystallization of Oligopeptidase B from Serratia Proteamaculans by Differential Scanning Fluorimetry.
Published in:
Crystallography Reports, 2020, v. 65, n. 2, p. 264, doi. 10.1134/S1063774520020170
By:
- Petrenko, D. E.;
- Nikolaeva, A. Yu.;
- Lazarenko, V. A.;
- Dorovatovskii, P. V.;
- Timofeev, V. I.;
- Vlaskina, A. V.;
- Korzhenevskiy, D. A.;
- Mikhailova, A. G.;
- Rakitina, T. V.
Publication type:
Article
Crystal Packing of Phosphopantetheine Adenylyltransferase from Mycobacterium tuberculosis in Two Crystal Modifications.
Published in:
Crystallography Reports, 2020, v. 65, n. 1, p. 84, doi. 10.1134/S1063774520010265
By:
- Timofeev, V. I.;
- Zhukhlistova, N. E.;
- Kuranova, I. P.
Publication type:
Article
Crystallization and Preliminary X-ray Diffraction Study of a Mutant of L-Asparaginase from Wolinella succinogenes.
Published in:
Crystallography Reports, 2019, v. 64, n. 6, p. 910, doi. 10.1134/S1063774519060221
By:
- Timofeev, V. I.;
- Bulushova, N. V.;
- Zhukhlistova, N. E.;
- Kuranova, I. P.
Publication type:
Article
Crystallization and Preliminary X-ray Diffraction Study of a Mutant of L-Asparaginase from Wolinella succinogenes.
Published in:
Crystallography Reports, 2019, v. 65, n. 6, p. 910, doi. 10.1134/S1063774519060221
By:
- Timofeev, V. I.;
- Bulushova, N. V.;
- Zhukhlistova, N. E.;
- Kuranova, I. P.
Publication type:
Article
Molecular Dynamics Study of Binding of Substrates Bearing Two Positively Charged Residues to Oligopeptidase B from Serratia proteamaculans.
Published in:
Crystallography Reports, 2019, v. 64, n. 5, p. 758, doi. 10.1134/S106377451905002X
By:
- Agapova, Yu. K.;
- Talyzina, A. A.;
- Zeifman, Yu. S.;
- Fateeva, T. V.;
- Timofeev, V. I.;
- Mikhailova, A. G.;
- Rakitina, T. V.
Publication type:
Article
Three-Dimensional Structure of a Mutant of Carboxypeptidase T from Thermoactinomyces vulgaris Bearing an Implanted S1' Subsite of Pancreatic Carboxypeptidase B Complexed with a Product Analog.
Published in:
Crystallography Reports, 2019, v. 64, n. 5, p. 750, doi. 10.1134/S1063774519040035
By:
- Akparov, V. Kh.;
- Timofeev, V. I.;
- Korzhenevskiy, D. A.;
- Kuranova, I. P.;
- Rakitina, T. V.
Publication type:
Article
Molecular Dynamics Study of Triazole Derivative Binding to the Active Site of Imidazole Glycerol Phosphate Dehydratase from Mycobacterium tuberculosis.
Published in:
Crystallography Reports, 2019, v. 64, n. 4, p. 608, doi. 10.1134/S1063774519040023
By:
- Agapova, Yu. K.;
- Timofeev, V. I.;
- Komolov, A. S.
Publication type:
Article

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