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Microbial diversity in individuals and their household contacts following typical antibiotic courses.
- Published in:
- Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0187-9
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- Publication type:
- Article
GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 611, doi. 10.1186/s12859-016-1119-1
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- Publication type:
- Article
Integrated de novo gene prediction and peptide assembly of metagenomic sequencing data.
- Published in:
- NAR Genomics & Bioinformatics, 2023, v. 5, n. 1, p. 1, doi. 10.1093/nargab/lqad023
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- Publication type:
- Article
Species-specific transcriptomic changes upon respiratory syncytial virus infection in cotton rats.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-19810-4
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- Publication type:
- Article
GRASP: Guided Reference-based Assembly of Short Peptides.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 3, p. e18, doi. 10.1093/nar/gku1210
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- Publication type:
- Article
SPA: a short peptide assembler for metagenomic data.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 8, p. e91, doi. 10.1093/nar/gkt118
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- Publication type:
- Article
Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism.
- Published in:
- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 12, p. 2605, doi. 10.1038/ismej.2015.72
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- Publication type:
- Article
Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics.
- Published in:
- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 7, p. 1648, doi. 10.1038/ismej.2014.254
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- Publication type:
- Article
Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea.
- Published in:
- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 9, p. 1892, doi. 10.1038/ismej.2014.35
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- Publication type:
- Article
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.
- Published in:
- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 6, p. 1186, doi. 10.1038/ismej.2011.189
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- Publication type:
- Article
Viral photosynthetic reaction center genes and transcripts in the marine environment.
- Published in:
- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2007, v. 1, n. 6, p. 492, doi. 10.1038/ismej.2007.67
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- Publication type:
- Article
A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome.
- Published in:
- Scientific Reports, 2016, p. 31731, doi. 10.1038/srep31731
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- Publication type:
- Article
Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition.
- Published in:
- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089549
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- Publication type:
- Article
A Metagenomic Framework for the Study of Airborne Microbial Communities.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081862
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- Publication type:
- Article
Microbiome Analysis of Stool Samples from African Americans with Colon Polyps.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081352
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- Publication type:
- Article
Metagenomic Exploration of Viruses throughout the Indian Ocean.
- Published in:
- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0042047
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- Publication type:
- Article
Analyses of the Microbial Diversity across the Human Microbiome.
- Published in:
- PLoS ONE, 2012, v. 7, n. 6, p. e321188, doi. 10.1371/journal.pone.0032118
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- Publication type:
- Article
A Case Study for Large-Scale Human Microbiome Analysis Using JCVI's Metagenomics Reports (METAREP).
- Published in:
- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0029044
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- Publication type:
- Article
Going Deeper: Metagenome of a Hadopelagic Microbial Community.
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- PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0020388
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- Publication type:
- Article
Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees.
- Published in:
- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0018011
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- Publication type:
- Article
The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples.
- Published in:
- PLoS ONE, 2008, v. 3, n. 1, p. e1456, doi. 10.1371/journal.pone.0001456
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- Publication type:
- Article
Bacterial community structure alterations within the colorectal cancer gut microbiome.
- Published in:
- BMC Microbiology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12866-021-02153-x
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- Publication type:
- Article
Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2965-y
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- Publication type:
- Article
Gut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5<sup>−/−</sup> mice.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09525-y
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- Publication type:
- Article
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-182
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- Publication type:
- Article
Co-occurrence of Anaerobes in Human Chronic Wounds.
- Published in:
- Microbial Ecology, 2019, v. 77, n. 3, p. 808, doi. 10.1007/s00248-018-1231-z
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- Publication type:
- Article
Effect of Macondo Prospect 252 Oil on Microbiota Associated with Pelagic Sargassum in the Northern Gulf of Mexico.
- Published in:
- Microbial Ecology, 2017, v. 73, n. 1, p. 91, doi. 10.1007/s00248-016-0857-y
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- Publication type:
- Article
Genomic and functional adaptation in surface ocean planktonic prokaryotes.
- Published in:
- Nature, 2010, v. 468, n. 7320, p. 60, doi. 10.1038/nature09530
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- Publication type:
- Article
ANDES: Statistical tools for the ANalyses of DEep Sequencing.
- Published in:
- BMC Research Notes, 2010, v. 3, p. 199, doi. 10.1186/1756-0500-3-199
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- Publication type:
- Article
GRASP2: fast and memory-efficient gene-centric assembly and homolog search for metagenomic sequencing data.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 11, p. 1, doi. 10.1186/s12859-019-2818-1
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- Publication type:
- Article
Effect of 13-Hydroperoxyoctadecadienoic Acid (13-HPODE) Treatment on the Transcriptomic Profile of Poorly-Differentiated Caco-2 Cells.
- Published in:
- Applied Sciences (2076-3417), 2021, v. 11, n. 6, p. 2678, doi. 10.3390/app11062678
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- Publication type:
- Article
Meta-omic analyses of Baltic Sea cyanobacteria: diversity, community structure and salt acclimation.
- Published in:
- Environmental Microbiology, 2017, v. 19, n. 2, p. 673, doi. 10.1111/1462-2920.13592
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- Publication type:
- Article
Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters.
- Published in:
- Environmental Microbiology, 2016, v. 18, n. 12, p. 4442, doi. 10.1111/1462-2920.13407
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- Publication type:
- Article
De Novo Genome Assembly Highlights the Role of Lineage-Specific Gene Duplications in the Evolution of Venom in Fea's Viper (Azemiops feae).
- Published in:
- Genome Biology & Evolution, 2022, v. 14, p. 1, doi. 10.1093/gbe/evac082
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- Publication type:
- Article
Papio spp. Colon microbiome and its link to obesity in pregnancy.
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- Journal of Medical Primatology, 2018, v. 47, n. 6, p. 393, doi. 10.1111/jmp.12366
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- Publication type:
- Article
Pulmonary Microbiome of Patients Receiving Mechanical Ventilation: Changes Over Time.
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- American Journal of Critical Care, 2021, v. 30, n. 2, p. 128, doi. 10.4037/ajcc2021194
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- Publication type:
- Article
Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3679-5
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- Publication type:
- Article
Bacterial associations in the healthy human gut microbiome across populations.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-82449-0
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- Publication type:
- Article
Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-77289-3
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- Publication type:
- Article
Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution.
- Published in:
- PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155757
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- Publication type:
- Article
Metagenome and Metatranscriptome Analyses Using Protein Family Profiles.
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 7, p. 1, doi. 10.1371/journal.pcbi.1004991
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- Publication type:
- Article
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families.
- Published in:
- PLoS Biology, 2007, v. 5, n. 3, p. 0432, doi. 10.1371/journal.pbio.0050016
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- Publication type:
- Article
Uncovering complex microbiome activities via metatranscriptomics during 24 hours of oral biofilm assembly and maturation.
- Published in:
- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0591-4
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- Publication type:
- Article
Linking Inflammatory Bowel Disease Symptoms to Changes in the Gut Microbiome Structure and Function.
- Published in:
- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.673632
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- Publication type:
- Article
Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function.
- Published in:
- Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01044
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- Publication type:
- Article
A Microbiomic Analysis in African Americans with Colonic Lesions Reveals Streptococcus sp.VT162 as a Marker of Neoplastic Transformation.
- Published in:
- Genes, 2017, v. 8, n. 11, p. 314, doi. 10.3390/genes8110314
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- Publication type:
- Article
Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy.
- Published in:
- 2016
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- Publication type:
- journal article
Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection.
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1819-3
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- Publication type:
- Article
Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection.
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 631, doi. 10.1186/s12864-015-1819-3
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- Publication type:
- Article
A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes.
- Published in:
- BMC Genomics, 2010, v. 11, p. 430, doi. 10.1186/1471-2164-11-430
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- Publication type:
- Article