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Molecular Epidemiology of Isoniazid-resistant M tuberculosis in Port-au-Prince, Haiti.
Published in:
Open Forum Infectious Diseases, 2024, v. 11, n. 8, p. 1, doi. 10.1093/ofid/ofae421
By:
- Walsh, Kathleen F;
- Lee, Myung Hee;
- Chaguza, Chrispin;
- Pamphile, Widman;
- Royal, Gertrude;
- Escuyer, Vincent;
- Pape, Jean W;
- Fitzgerald, Daniel;
- Cohen, Ted;
- Ocheretina, Oksana
Publication type:
Article
Author Correction: Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity.
Published in:
2022
By:
- Panagiotou, Stavros;
- Chaguza, Chrispin;
- Yahya, Reham;
- Audshasai, Teerawit;
- Baltazar, Murielle;
- Ressel, Lorenzo;
- Khandaker, Shadia;
- Alsahag, Mansoor;
- Mitchell, Tim J.;
- Prudhomme, Marc;
- Kadioglu, Aras;
- Yang, Marie
Publication type:
Correction Notice
Genetic markers associated with host status and clonal expansion of Group B Streptococcus in the Netherlands.
Published in:
Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1410651
By:
- Khan, Uzma Basit;
- Dyster, Victoria;
- Chaguza, Chrispin;
- van Sorge, Nina M.;
- van de Beek, Diederik;
- Wing Kit Man;
- Bentley, Stephen D.;
- Bijlsma, Merijn W.;
- Jamrozy, Dorota
Publication type:
Article
Daily Rapid Antigen Exit Testing to Tailor University COVID-19 Isolation Policy.
Published in:
Emerging Infectious Diseases, 2022, v. 28, n. 12, p. 2455, doi. 10.3201/eid2812.220969
By:
- Earnest, Rebecca;
- Chen, Christine;
- Chaguza, Chrispin;
- Hahn, Anne M.;
- Grubaugh, Nathan D.;
- Wilson, Madeline S.;
- Yale COVID-19 Resulting and Isolation Team2
Publication type:
Article
Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31858-4
By:
- Chaguza, Chrispin;
- Jamrozy, Dorota;
- Bijlsma, Merijn W.;
- Kuijpers, Taco W.;
- van de Beek, Diederik;
- van der Ende, Arie;
- Bentley, Stephen D.
Publication type:
Article
Evaluation of Dried Blood and Cerebrospinal Fluid Filter Paper Spots for Storing and Transporting Clinical Material for the Molecular Diagnosis of Invasive Meningococcal Disease.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 19, p. 11879, doi. 10.3390/ijms231911879
By:
- Kwambana-Adams, Brenda A.;
- Clark, Stephen A.;
- Tay, Nicole;
- Agbla, Schadrac;
- Chaguza, Chrispin;
- Kagucia, Eunice W.;
- Borrow, Ray;
- Heyderman, Robert S.
Publication type:
Article
Whole genomic comparative analysis of Streptococcus pneumoniae serotype 1 isolates causing invasive and non-invasive infections among children under 5 years in Casablanca, Morocco.
Published in:
BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-020-07316-0
By:
- Nzoyikorera, Néhémie;
- Diawara, Idrissa;
- Fresia, Pablo;
- Maaloum, Fakhreddine;
- Katfy, Khalid;
- Nayme, Kaotar;
- Maaloum, Mossaab;
- Cornick, Jennifer;
- Chaguza, Chrispin;
- Timinouni, Mohammed;
- Belabess, Houria;
- Zerouali, Khalid;
- Elmdaghri, Naima
Publication type:
Article
Comparative whole genome analysis reveals re-emergence of human Wa-like and DS-1-like G3 rotaviruses after Rotarix vaccine introduction in Malawi.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead030
By:
- Mhango, Chimwemwe;
- Banda, Akuzike;
- Chinyama, End;
- Mandolo, Jonathan J.;
- Kumwenda, Orpha;
- Malamba-Banda, Chikondi;
- Barnes, Kayla G.;
- Kumwenda, Benjamin;
- Jambo, Kondwani C.;
- Donato, Celeste M.;
- Esona, Mathew D.;
- Mwangi, Peter N.;
- Steele, A. Duncan;
- Iturriza-Gomara, Miren;
- Cunliffe, Nigel A.;
- Ndze, Valentine N.;
- Kamng’ona, Arox W.;
- Dennis, Francis E.;
- Nyaga, Martin M.;
- Chaguza, Chrispin
Publication type:
Article
RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
Published in:
Bioinformatics, 2022, v. 38, n. 5, p. 1450, doi. 10.1093/bioinformatics/btab814
By:
- Chaguza, Chrispin;
- Tonkin-Hill, Gerry;
- Lo, Stephanie W;
- Hadfield, James;
- Croucher, Nicholas J;
- Harris, Simon R;
- Bentley, Stephen D
Publication type:
Article
Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models.
Published in:
Molecular Biology & Evolution, 2021, v. 38, n. 6, p. 2209, doi. 10.1093/molbev/msab018
By:
- Green, Angharad E;
- Howarth, Deborah;
- Chaguza, Chrispin;
- Echlin, Haley;
- Langendonk, R Frèdi;
- Munro, Connor;
- Barton, Thomas E;
- Hinton, Jay C D;
- Bentley, Stephen D;
- Rosch, Jason W;
- Neill, Daniel R
Publication type:
Article
Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism.
Published in:
Communications Biology, 2020, v. 3, n. 1, p. N.PAG, doi. 10.1038/s42003-020-01290-9
By:
- Chaguza, Chrispin;
- Yang, Marie;
- Cornick, Jennifer E.;
- du Plessis, Mignon;
- Gladstone, Rebecca A.;
- Kwambana-Adams, Brenda A.;
- Lo, Stephanie W.;
- Ebruke, Chinelo;
- Tonkin-Hill, Gerry;
- Peno, Chikondi;
- Senghore, Madikay;
- Obaro, Stephen K.;
- Ousmane, Sani;
- Pluschke, Gerd;
- Collard, Jean-Marc;
- Sigaùque, Betuel;
- French, Neil;
- Klugman, Keith P.;
- Heyderman, Robert S.;
- McGee, Lesley
Publication type:
Article
DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus.
Published in:
BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10350-x
By:
- Vogels, Chantal B. F.;
- Hill, Verity;
- Breban, Mallery I.;
- Chaguza, Chrispin;
- Paul, Lauren M.;
- Sodeinde, Afeez;
- Taylor-Salmon, Emma;
- Ott, Isabel M.;
- Petrone, Mary E.;
- Dijk, Dennis;
- Jonges, Marcel;
- Welkers, Matthijs R. A.;
- Locksmith, Timothy;
- Dong, Yibo;
- Tarigopula, Namratha;
- Tekin, Omer;
- Schmedes, Sarah;
- Bunch, Sylvia;
- Cano, Natalia;
- Jaber, Rayah
Publication type:
Article
Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci.
Published in:
Genome Biology & Evolution, 2022, v. 14, n. 4, p. 1, doi. 10.1093/gbe/evac052
By:
- Chaguza, Chrispin;
- Ebruke, Chinelo;
- Senghore, Madikay;
- Lo, Stephanie W.;
- Tientcheu, Peggy-Estelle;
- Gladstone, Rebecca A.;
- Tonkin-Hill, Gerry;
- Cornick, Jennifer E.;
- Yang, Marie;
- Worwui, Archibald;
- McGee, Lesley;
- Breiman, Robert F.;
- Klugman, Keith P.;
- Kadioglu, Aras;
- Everett, Dean B.;
- Mackenzie, Grant;
- Croucher, Nicholas J.;
- Roca, Anna;
- Kwambana-Adams, Brenda A.;
- Antonio, Martin
Publication type:
Article
Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data.
Published in:
Clinical Infectious Diseases, 2020, v. 70, n. 7, p. 1294, doi. 10.1093/cid/ciz404
By:
- Chaguza, Chrispin;
- Heinsbroek, Ellen;
- Gladstone, Rebecca A;
- Tafatatha, Terence;
- Alaerts, Maaike;
- Peno, Chikondi;
- Cornick, Jennifer E;
- Musicha, Patrick;
- Bar-Zeev, Naor;
- Kamng'ona, Arox;
- Kadioglu, Aras;
- McGee, Lesley;
- Hanage, William P;
- Breiman, Robert F;
- Heyderman, Robert S;
- French, Neil;
- Everett, Dean B;
- Bentley, Stephen D
Publication type:
Article
Development of an amplicon-based sequencing approach in response to the global emergence of mpox.
Published in:
PLoS Biology, 2023, v. 21, n. 6, p. 1, doi. 10.1371/journal.pbio.3002151
By:
- Chen, Nicholas F. G.;
- Chaguza, Chrispin;
- Gagne, Luc;
- Doucette, Matthew;
- Smole, Sandra;
- Buzby, Erika;
- Hall, Joshua;
- Ash, Stephanie;
- Harrington, Rachel;
- Cofsky, Seana;
- Clancy, Selina;
- Kapsak, Curtis J.;
- Sevinsky, Joel;
- Libuit, Kevin;
- Park, Daniel J.;
- Hemarajata, Peera;
- Garrigues, Jacob M.;
- Green, Nicole M.;
- Sierra-Patev, Sean;
- Carpenter-Azevedo, Kristin
Publication type:
Article
Author Correction: Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity.
Published in:
2021
By:
- Panagiotou, Stavros;
- Chaguza, Chrispin;
- Yahya, Reham;
- Audshasai, Teerawit;
- Baltazar, Murielle;
- Ressel, Lorenzo;
- Khandaker, Shadia;
- Alsahag, Mansoor;
- Mitchell, Tim J.;
- Prudhomme, Marc;
- Kadioglu, Aras;
- Yang, Marie
Publication type:
Correction Notice
Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-73454-w
By:
- Panagiotou, Stavros;
- Chaguza, Chrispin;
- Yahya, Reham;
- Audshasai, Teerawit;
- Baltazar, Murielle;
- Ressel, Lorenzo;
- Khandaker, Shadia;
- Alsahag, Mansoor;
- Mitchell, Tim J.;
- Prudhomme, Marc;
- Kadioglu, Aras;
- Yang, Marie
Publication type:
Article
Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.
Published in:
PLoS Computational Biology, 2024, v. 20, n. 9, p. 1, doi. 10.1371/journal.pcbi.1012469
By:
- Li, Ke;
- Chaguza, Chrispin;
- Stamp, Julian;
- Chew, Yi Ting;
- Chen, Nicholas F. G.;
- Ferguson, David;
- Pandya, Sameer;
- Kerantzas, Nick;
- Schulz, Wade;
- Hahn, Anne M.;
- Ogbunugafor, C. Brandon;
- Pitzer, Virginia E.;
- Crawford, Lorin;
- Weinberger, Daniel M.;
- Grubaugh, Nathan D.
Publication type:
Article
Population genomics of Streptococcus mitis in UK and Ireland bloodstream infection and infective endocarditis cases.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52120-z
By:
- Kalizang'oma, Akuzike;
- Richard, Damien;
- Kwambana-Adams, Brenda;
- Coelho, Juliana;
- Broughton, Karen;
- Pichon, Bruno;
- Hopkins, Katie L.;
- Chalker, Victoria;
- Beleza, Sandra;
- Bentley, Stephen D.;
- Chaguza, Chrispin;
- Heyderman, Robert S.
Publication type:
Article
Genomic insights into the 2022–2023Vibrio cholerae outbreak in Malawi.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50484-w
By:
- Chaguza, Chrispin;
- Chibwe, Innocent;
- Chaima, David;
- Musicha, Patrick;
- Ndeketa, Latif;
- Kasambara, Watipaso;
- Mhango, Chimwemwe;
- Mseka, Upendo L.;
- Bitilinyu-Bangoh, Joseph;
- Mvula, Bernard;
- Kipandula, Wakisa;
- Bonongwe, Patrick;
- Munthali, Richard J.;
- Ngwira, Selemani;
- Mwendera, Chikondi A.;
- Kalizang'oma, Akuzike;
- Jambo, Kondwani C.;
- Kambalame, Dzinkambani;
- Kamng'ona, Arox W.;
- Steele, A. Duncan
Publication type:
Article
Clonal Expansion of a Streptococcus pneumoniae Serotype 3 Capsule Variant Sequence Type 700 With Enhanced Vaccine Escape Potential After 13-Valent Pneumococcal Conjugate Vaccine Introduction.
Published in:
Journal of Infectious Diseases, 2024, v. 230, n. 1, p. e189, doi. 10.1093/infdis/jiae040
By:
- Kalizang'oma, Akuzike;
- Swarthout, Todd D;
- Mwalukomo, Thandie S;
- Kamng'ona, Arox;
- Brown, Comfort;
- Msefula, Jacquline;
- Demetriou, Hayley;
- Chan, Jia Mun;
- Roalfe, Lucy;
- Obolski, Uri;
- Lourenço, Jose;
- Goldblatt, David;
- Chaguza, Chrispin;
- French, Neil;
- Heyderman, Robert S
Publication type:
Article
Rotavirus Genotypes in Hospitalized Children With Acute Gastroenteritis Before and After Rotavirus Vaccine Introduction in Blantyre, Malawi, 1997-2019.
Published in:
2022
By:
- Mhango, Chimwemwe;
- Mandolo, Jonathan J;
- Chinyama, End;
- Wachepa, Richard;
- Kanjerwa, Oscar;
- Malamba-Banda, Chikondi;
- Matambo, Prisca B;
- Barnes, Kayla G;
- Chaguza, Chrispin;
- Shawa, Isaac T;
- Nyaga, Martin M;
- Hungerford, Daniel;
- Parashar, Umesh D;
- Pitzer, Virginia E;
- Kamng'ona, Arox W;
- Iturriza-Gomara, Miren;
- Cunliffe, Nigel A;
- Jere, Khuzwayo C
Publication type:
journal article
Comparative Genomic Analysis and In Vivo Modeling of Streptococcus pneumoniae ST3081 and ST618 Isolates Reveal Key Genetic and Phenotypic Differences Contributing to Clonal Replacement of Serotype 1 in The Gambia.
Published in:
2017
By:
- Bricio-Moreno, Laura;
- Ebruke, Chinelo;
- Chaguza, Chrispin;
- Cornick, Jennifer;
- Kwambana-Adams, Brenda;
- Yang, Marie;
- Mackenzie, Grant;
- Wren, Brendan W.;
- Everett, Dean;
- Antonio, Martin;
- Kadioglu, Aras
Publication type:
journal article
Understanding pneumococcal serotype 1 biology through population genomic analysis.
Published in:
2016
By:
- Chaguza, Chrispin;
- Cornick, Jennifer E;
- Harris, Simon R;
- Andam, Cheryl P;
- Bricio-Moreno, Laura;
- Yang, Marie;
- Yalcin, Feyruz;
- Ousmane, Sani;
- Govindpersad, Shanil;
- Senghore, Madikay;
- Ebruke, Chinelo;
- Du Plessis, Mignon;
- Kiran, Anmol M;
- Pluschke, Gerd;
- Sigauque, Betuel;
- McGee, Lesley;
- Klugman, Keith P;
- Turner, Paul;
- Corander, Jukka;
- Parkhill, Julian
Publication type:
journal article
Understanding pneumococcal serotype 1 biology through population genomic analysis.
Published in:
BMC Infectious Diseases, 2016, v. 16, p. 1, doi. 10.1186/s12879-016-1987-z
By:
- Chaguza, Chrispin;
- Cornick, Jennifer E.;
- Harris, Simon R.;
- Andam, Cheryl P.;
- Bricio-Moreno, Laura;
- Marie Yang;
- Yalcin, Feyruz;
- Ousmane, Sani;
- Govindpersad, Shanil;
- Senghore, Madikay;
- Ebruke, Chinelo;
- Plessis, Mignon Du;
- Kiran, Anmol M.;
- Pluschke, Gerd;
- Sigauque, Betuel;
- McGee, Lesley;
- Klugman, Keith P.;
- Turner, Paul;
- Corander, Jukka;
- Parkhill, Julian
Publication type:
Article
High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children.
Published in:
BMC Infectious Diseases, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12879-015-0980-2
By:
- Kamng'ona, Arox W.;
- Hinds, Jason;
- Bar-Zeev, Naor;
- Gould, Katherine A.;
- Chaguza, Chrispin;
- Msefula, Chisomo;
- Cornick, Jennifer E.;
- Kulohoma, Benard W.;
- Gray, Katherine;
- Bentley, Stephen D.;
- French, Neil;
- Heyderman, Robert S.;
- Everett, Dean B.
Publication type:
Article
High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children.
Published in:
2015
By:
- Kamng'ona, Arox W;
- Hinds, Jason;
- Bar-Zeev, Naor;
- Gould, Katherine A;
- Chaguza, Chrispin;
- Msefula, Chisomo;
- Cornick, Jennifer E;
- Kulohoma, Benard W;
- Gray, Katherine;
- Bentley, Stephen D;
- French, Neil;
- Heyderman, Robert S;
- Everett, Dean B
Publication type:
journal article
Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages.
Published in:
2019
By:
- Musicha, Patrick;
- Msefula, Chisomo L;
- Mather, Alison E;
- Chaguza, Chrispin;
- Cain, Amy K;
- Peno, Chikondi;
- Kallonen, Teemu;
- Khonga, Margaret;
- Denis, Brigitte;
- Gray, Katherine J;
- Heyderman, Robert S;
- Thomson, Nicholas R;
- Everett, Dean B;
- Feasey, Nicholas A
Publication type:
journal article
Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting.
Published in:
2017
By:
- Musicha, Patrick;
- Feasey, Nicholas A.;
- Cain, Amy K.;
- Kallonen, Teemu;
- Chaguza, Chrispin;
- Peno, Chikondi;
- Khonga, Margaret;
- Thompson, Sarah;
- Gray, Katherine J.;
- Mather, Alison E.;
- Heyderman, Robert S.;
- Everett, Dean B.;
- Thomson, Nicholas R.;
- Msefula, Chisomo L.
Publication type:
journal article
Heterotypic vaccination responses against SARS-CoV-2 Omicron BA.2.
Published in:
Cell Discovery, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41421-022-00435-w
By:
- Fang, Zhenhao;
- Peng, Lei;
- Lucas, Carolina;
- Lin, Qianqian;
- Zhou, Liqun;
- Yang, Luojia;
- Feng, Yanzhi;
- Ren, Ping;
- Renauer, Paul A.;
- Monteiro, Valter S.;
- Hahn, Anne M.;
- Park, Jonathan J.;
- Zhou, Xiaoyu;
- Yale SARS-CoV-2 Genomic Surveillance Initiative;
- Billig, Kendall;
- Breban, Mallery I.;
- Castaldi, Christopher;
- Chaguza, Chrispin;
- Chen, Nicholas;
- Ferguson, David
Publication type:
Article
Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17327-w
By:
- Chaguza, Chrispin;
- Senghore, Madikay;
- Bojang, Ebrima;
- Gladstone, Rebecca A.;
- Lo, Stephanie W.;
- Tientcheu, Peggy-Estelle;
- Bancroft, Rowan E.;
- Worwui, Archibald;
- Foster-Nyarko, Ebenezer;
- Ceesay, Fatima;
- Okoi, Catherine;
- McGee, Lesley;
- Klugman, Keith P.;
- Breiman, Robert F.;
- Barer, Michael R.;
- Adegbola, Richard A.;
- Antonio, Martin;
- Bentley, Stephen D.;
- Kwambana-Adams, Brenda A.
Publication type:
Article
Estimating pneumococcal carriage dynamics in adults living with HIV in a mature infant pneumococcal conjugate vaccine programme in Malawi, a modelling study.
Published in:
BMC Medicine, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12916-024-03631-5
By:
- Phiri, Joseph;
- Sibale, Lusako;
- Mlongoti, Lukerensia;
- Mitole, Ndaona;
- Kusakala, Alice;
- Khwiya, Mercy;
- Kayembe, Thokozani;
- Lisimba, Edwin;
- Kapwata, Prosperina;
- Malisita, Ken;
- Chaguza, Chrispin;
- Ferreira, Daniela M.;
- Thindwa, Deus;
- Jambo, Kondwani
Publication type:
Article

Found: 32