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Ferrets as Models for Influenza Virus Transmission Studies and Pandemic Risk Assessments.
Published in:
2018
By:
- Belser, Jessica A.;
- Barclay, Wendy;
- Barr, Ian;
- Fouchier, Ron A. M.;
- Ryota Matsuyama;
- Hiroshi Nishiura;
- Peiris, Malik;
- Russell, Charles J.;
- Subbarao, Kanta;
- Huachen Zhu;
- Hui-Ling Yen;
- Matsuyama, Ryota;
- Nishiura, Hiroshi;
- Zhu, Huachen;
- Yen, Hui-Ling
Publication type:
journal article
Cohort Profile: A study of influenza immunity in the urban and rural Guangzhou region of China: the Fluscape Study.
Published in:
2017
By:
- Chao Qiang Jiang;
- Lessler, Justin;
- Kim, Lina;
- Kwok, Kin On;
- Read, Jonathan M.;
- Shuying Wang;
- Lijiu Tan;
- Hast, Marisa;
- Huachen Zhu;
- Yi Guan;
- Riley, Steven;
- Cummings, Derek A. T.;
- Jiang, Chao Qiang;
- Wang, Shuying;
- Tan, Lijiu;
- Zhu, Huachen;
- Guan, Yi;
- Cummings, Derek At
Publication type:
journal article
Dysregulated T-Helper Type 1 (Th1):Th2 Cytokine Profile and Poor Immune Response in Pregnant Ferrets Infected With 2009 Pandemic Influenza A(H1N1) Virus.
Published in:
2018
By:
- Sun-Woo Yoon;
- Sook-San Wong;
- Huachen Zhu;
- Rirong Chen;
- Long Li;
- Yu Zhang;
- Yi Guan;
- Richard J. Webby;
- Yoon, Sun-Woo;
- Wong, Sook-San;
- Zhu, Huachen;
- Chen, Rirong;
- Li, Long;
- Zhang, Yu;
- Guan, Yi;
- Webby, Richard J
Publication type:
journal article
Surveillance of Rodent Pests for SARS-CoV-2 and Other Coronaviruses, Hong Kong.
Published in:
Emerging Infectious Diseases, 2022, v. 28, n. 2, p. 467, doi. 10.3201/eid2802.211586
By:
- Miot, Elliott F.;
- Worthington, Brian M.;
- Kar Hon Ng;
- de Guilhem de Lataillade, Lucy;
- Pierce, Mac P.;
- Yunshi Liao;
- Ko, Ronald;
- Shum, Marcus H.;
- Cheung, William Y.;
- Holmes, Edward C.;
- Leung, Kathy S.;
- Huachen Zhu;
- Poon, Leo L.;
- Peiris, J. S. Malik;
- Yi Guan;
- Leung, Gabriel M.;
- Wu, Joseph T.;
- Lam, Tommy T.
Publication type:
Article
Possible Role of Songbirds and Parakeets in Transmission of Influenza A(H7N9) Virus to Humans.
Published in:
Emerging Infectious Diseases, 2014, v. 20, n. 3, p. 380, doi. 10.3201/eid2003.131271
By:
- Jones, Jeremy C.;
- Sonnberg, Stephanie;
- Koçer, Zeynep A.;
- Shanmuganatham, Karthik;
- Seiler, Patrick;
- Shu, Yuelong;
- Zhu, Huachen;
- Guan, Yi;
- Peiris, Malik;
- Webby, Richard J.;
- Webster, Robert G.
Publication type:
Article
Discovery of novel Mamastroviruses in Bactrian camels and dromedaries reveals complex recombination history.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac125
By:
- Qureshi, Muhammad I;
- Worthington, Brian M;
- Liu, Yongmei;
- Cheung, William Y.-M;
- Su, Shuo;
- Zheng, Zuoyi;
- Li, Lifeng;
- Lam, Tommy T -Y;
- Guan, Yi;
- Zhu, Huachen
Publication type:
Article
Influenza A virus transmission in swine farms and during transport in the swine supply chain.
Published in:
Transboundary & Emerging Diseases, 2022, v. 69, n. 5, p. e3101, doi. 10.1111/tbed.14667
By:
- Cheung, Jonathan Tin Lai;
- Lau, Eric HY;
- Jin, Ziying;
- Zhu, Huachen;
- Guan, Yi;
- Peiris, Malik
Publication type:
Article
Dual E627K and D701N mutations in the PB2 protein of A(H7N9) influenza virus increased its virulence in mammalian models.
Published in:
Scientific Reports, 2015, p. 14170, doi. 10.1038/srep14170
By:
- Zhu, Wenfei;
- Li, Long;
- Yan, Zhigang;
- Gan, Tanhuan;
- Li, Lifeng;
- Chen, Rirong;
- Chen, Ruidong;
- Zheng, Zuoyi;
- Hong, Wenshan;
- Wang, Jia;
- Smith, David K.;
- Guan, Yi;
- Zhu, Huachen;
- Shu, Yuelong
Publication type:
Article
Anticipating the Prevalence of Avian Influenza Subtypes H9 and H5 in Live-Bird Markets.
Published in:
PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056157
By:
- Pepin, Kim M.;
- Wang, Jia;
- Webb, Colleen T.;
- Hoeting, Jennifer A.;
- Poss, Mary;
- Hudson, Peter J.;
- Hong, Wenshan;
- Zhu, Huachen;
- Guan, Yi;
- Riley, Steven
Publication type:
Article
H7N9 Incident, immune status, the elderly and a warning of an influenza pandemic.
Published in:
Journal of Infection in Developing Countries, 2013, v. 7, n. 4, p. 302, doi. 10.3855/jidc.3675
By:
- Yi Guan;
- Farooqui, Amber;
- Huachen Zhu;
- Wei Dong;
- Jia Wang;
- Kelvin, David J.
Publication type:
Article
Minimizing the threat of pandemic emergence from avian influenza in poultry systems.
Published in:
BMC Infectious Diseases, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2334-13-592
By:
- Pepin, Kim M.;
- Lloyd-Smith, James O.;
- Webb, Colleen T.;
- Holcomb, Karen;
- Huachen Zhu;
- Yi Guan;
- Riley, Steven
Publication type:
Article
Minimizing the threat of pandemic emergence from avian influenza in poultry systems.
Published in:
2013
By:
- Pepin, Kim M;
- Lloyd-Smith, James O;
- Webb, Colleen T;
- Holcomb, Karen;
- Zhu, Huachen;
- Guan, Yi;
- Riley, Steven
Publication type:
journal article
Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data.
Published in:
Molecular Biology & Evolution, 2020, v. 37, n. 2, p. 599, doi. 10.1093/molbev/msz240
By:
- Wang, Li-Gen;
- Lam, Tommy Tsan-Yuk;
- Xu, Shuangbin;
- Dai, Zehan;
- Zhou, Lang;
- Feng, Tingze;
- Guo, Pingfan;
- Dunn, Casey W;
- Jones, Bradley R;
- Bradley, Tyler;
- Zhu, Huachen;
- Guan, Yi;
- Jiang, Yong;
- Yu, Guangchuang
Publication type:
Article
Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree.
Published in:
Molecular Biology & Evolution, 2018, v. 35, n. 12, p. 3041, doi. 10.1093/molbev/msy194
By:
- Yu, Guangchuang;
- Lam, Tommy Tsan-Yuk;
- Zhu, Huachen;
- Guan, Yi
Publication type:
Article
Long-term evolution and transmission dynamics of swine influenza A virus.
Published in:
Nature, 2011, v. 473, n. 7348, p. 519, doi. 10.1038/nature10004
By:
- Vijaykrishna, Dhanasekaran;
- Smith, Gavin J. D.;
- Pybus, Oliver G.;
- Huachen Zhu;
- Bhatt, Samir;
- Poon, Leo L. M.;
- Riley, Steven;
- Bahl, Justin;
- Ma, Siu K.;
- Chung L. Cheung;
- Perera, Ranawaka A. P. M.;
- Honglin Chen;
- Shortridge, Kennedy F.;
- Webby, Richard J.;
- Webster, Robert G.;
- Yi Guan;
- Peiris, J. S. Malik
Publication type:
Article
Antiviral Nanobiologic Therapy Remodulates Innate Immune Responses to Highly Pathogenic Coronavirus.
Published in:
Advanced Science, 2023, v. 10, n. 17, p. 1, doi. 10.1002/advs.202207249
By:
- Liu, Xuan;
- Yuan, Lunzhi;
- Chen, Jijing;
- Zhang, Yali;
- Chen, Peiwen;
- Zhou, Ming;
- Xie, Jiaxuan;
- Ma, Jian;
- Zhang, Jianzhong;
- Wu, Kun;
- Tang, Qiyi;
- Yuan, Quan;
- Zhu, Huachen;
- Cheng, Tong;
- Guan, Yi;
- Liu, Gang;
- Xia, Ningshao
Publication type:
Article
Molecular Detection of Human H7N9 Influenza A Virus Causing Outbreaks in China.
Published in:
Clinical Chemistry, 2013, v. 59, n. 7, p. 1062, doi. 10.1373/clinchem.2013.208975
By:
- Wong, Chloe K. S.;
- Huachen Zhu;
- Li, Olive T. W.;
- Yin Hung C. Leung;
- Chan, Michael C. W.;
- Yi Guan;
- Peiris, Joseph S. M.;
- Poon, Leo L. M.
Publication type:
Article
Mammalian adaptation of influenza A(H7N9) virus is limited by a narrow genetic bottleneck.
Published in:
Nature Communications, 2015, v. 6, n. 4, p. 6553, doi. 10.1038/ncomms7553
By:
- Zaraket, Hassan;
- Baranovich, Tatiana;
- Kaplan, Bryan S.;
- Carter, Robert;
- Song, Min-Suk;
- Paulson, James C.;
- Rehg, Jerold E.;
- Bahl, Justin;
- Crumpton, Jeri C.;
- Seiler, Jon;
- Edmonson, Michael;
- Wu, Gang;
- Karlsson, Erik;
- Fabrizio, Thomas;
- Zhu, Huachen;
- Guan, Yi;
- Husain, Matloob;
- Schultz-Cherry, Stacey;
- Krauss, Scott;
- McBride, Ryan
Publication type:
Article
Predominance of Dengue Virus Serotype-1/Genotype-I in Eastern and Southeastern Ethiopia.
Published in:
Viruses (1999-4915), 2024, v. 16, n. 8, p. 1334, doi. 10.3390/v16081334
By:
- Tsegaye, Mesfin Mengesha;
- Mekonnen, Adamu Tayachew;
- Gebretsion, Daniel Tsega;
- Gelanew, Tesfaye;
- Alemayehu, Dawit Hailu;
- Tefera, Dessalegn Abeje;
- Woldemichael, Tamirayehu Seyoum;
- Getaneh, Bethlehem Adnew;
- Abera, Eleni Kidane;
- Jebessa, Gadissa Gutema;
- Korkiso, Asefa Konde;
- Tessema, Mengistu Biru;
- Asfaw, Admikew Agunie;
- Temre, Yoseph Asrat;
- Wossen, Mesfin;
- Piantadosi, Anne;
- Zhu, Huachen;
- Abdissa, Alemseged;
- Mihret, Adane;
- Mulu, Andargachew
Publication type:
Article
Evidence for Antigenic Seniority in Influenza A (H3N2) Antibody Responses in Southern China.
Published in:
PLoS Pathogens, 2012, v. 8, n. 7, p. 1, doi. 10.1371/journal.ppat.1002802
By:
- Lessler, Justin;
- Riley, Steven;
- Read, Jonathan M.;
- Shuying Wang;
- Huachen Zhu;
- Smith, Gavin J. D.;
- Yi Guan;
- Chao Qiang Jiang;
- Cumming, Derek A. T.
Publication type:
Article
Long term intrinsic cycling in human life course antibody responses to influenza A(H3N2): an observational and modeling study.
Published in:
eLife, 2022, p. 1, doi. 10.7554/eLife.81457
By:
- Bingyi Yang;
- García-Carreras, Bernardo;
- Lessler, Justin;
- Read, Jonathan M.;
- Huachen Zhu;
- Metcalf, C. Jessica E.;
- Hay, James A.;
- Kwok, Kin O.;
- Ruiyun Shen;
- Jiang, Chao Q.;
- Yi Guan;
- Riley, Steven;
- Cummings, Derek A.
Publication type:
Article
Robust expansion of phylogeny for fast-growing genome sequence data.
Published in:
PLoS Computational Biology, 2024, v. 20, n. 2, p. 1, doi. 10.1371/journal.pcbi.1011871
By:
- Ye, Yongtao;
- Shum, Marcus H.;
- Tsui, Joseph L.;
- Yu, Guangchuang;
- Smith, David K.;
- Zhu, Huachen;
- Wu, Joseph T.;
- Guan, Yi;
- Lam, Tommy Tsan-Yuk
Publication type:
Article
Estimating the Life Course of Influenza A(H3N2) Antibody Responses from Cross-Sectional Data.
Published in:
PLoS Biology, 2015, v. 13, n. 3, p. 1, doi. 10.1371/journal.pbio.1002082
By:
- Kucharski, Adam J.;
- Lessler, Justin;
- Read, Jonathan M.;
- Zhu, Huachen;
- Jiang, Chao Qiang;
- Guan, Yi;
- Cummings, Derek A. T.;
- Riley, Steven
Publication type:
Article
Insect resistance to Nilaparvata lugens and Cnaphalocrocis medinalis in transgenic indica rice and the inheritance of gna+sbti transgenes.
Published in:
Pest Management Science, 2005, v. 61, n. 4, p. 390, doi. 10.1002/ps.990
By:
- Guiying Li;
- Xinping Xu;
- Hengtai Xing;
- Huachen Zhu;
- Qin Fan
Publication type:
Article
Persisting lung pathogenesis and minimum residual virus in hamster after acute COVID-19.
Published in:
2022
By:
- Yuan, Lunzhi;
- Zhu, Huachen;
- Zhou, Ming;
- Ma, Jian;
- Chen, Rirong;
- Yu, Liuqin;
- Chen, Wenjia;
- Hong, Wenshan;
- Wang, Jia;
- Chen, Yao;
- Wu, Kun;
- Hou, Wangheng;
- Zhang, Yali;
- Ge, Shengxiang;
- Chen, Yixin;
- Yuan, Quan;
- Tang, Qiyi;
- Cheng, Tong;
- Guan, Yi;
- Xia, Ningshao
Publication type:
Letter
Using serological measures to estimate influenza incidence in the presence of secular trends in exposure and immuno‐modulation of antibody response.
Published in:
Influenza & Other Respiratory Viruses, 2021, v. 15, n. 2, p. 235, doi. 10.1111/irv.12807
By:
- Quandelacy, Talia M.;
- Cummings, Derek A. T.;
- Jiang, Chao Qiang;
- Yang, Bingyi;
- Kwok, Kin On;
- Dai, Byran;
- Shen, Ruiyin;
- Read, Jonathan M.;
- Zhu, Huachen;
- Guan, Yi;
- Riley, Steven;
- Lessler, Justin
Publication type:
Article
A field‐deployable insulated isothermal RT‐PCR assay for identification of influenza A (H7N9) shows good performance in the laboratory.
Published in:
Influenza & Other Respiratory Viruses, 2019, v. 13, n. 6, p. 610, doi. 10.1111/irv.12646
By:
- Inui, Ken;
- Nguyen, Tung;
- Tseng, Hsin‐Jou;
- Tsai, ChuanFu Mark;
- Tsai, Yun‐Long;
- Chung, Simon;
- Padungtod, Pawin;
- Zhu, Huachen;
- Guan, Yi;
- Kalpravidh, Wantanee;
- Claes, Filip
Publication type:
Article
A comparison of hemagglutination inhibition and neutralization assays for characterizing immunity to seasonal influenza A.
Published in:
Influenza & Other Respiratory Viruses, 2016, v. 10, n. 6, p. 518, doi. 10.1111/irv.12408
By:
- Truelove, Shaun;
- Zhu, Huachen;
- Lessler, Justin;
- Riley, Steven;
- Read, Jonathan M.;
- Wang, Shuying;
- Kwok, Kin On;
- Guan, Yi;
- Jiang, Chao Qiang;
- Cummings, Derek A. T.
Publication type:
Article
Use of fractional factorial design to study the compatibility of viral ribonucleoprotein gene segments of human H7N9 virus and circulating human influenza subtypes.
Published in:
Influenza & Other Respiratory Viruses, 2014, v. 8, n. 5, p. 580, doi. 10.1111/irv.12269
By:
- Chin, Alex W. H.;
- Mok, Chris K. P.;
- Zhu, Huachen;
- Guan, Yi;
- Peiris, Joseph S. M.;
- Poon, Leo L. M.
Publication type:
Article
Multiannual patterns of influenza A transmission in Chinese live bird market systems.
Published in:
Influenza & Other Respiratory Viruses, 2013, v. 7, n. 1, p. 97, doi. 10.1111/j.1750-2659.2012.00354.x
By:
- Pepin, Kim M.;
- Wang, Jia;
- Webb, Colleen T.;
- Smith, Gavin J. D.;
- Poss, Mary;
- Hudson, Peter J.;
- Hong, Wenshan;
- Zhu, Huachen;
- Riley, Steven;
- Guan, Yi
Publication type:
Article
Decisive reversal of lethal coronavirus disease 2019 in senescent hamster by synchronic antiviral and immunoregulatory intervention.
Published in:
MedComm, 2024, v. 5, n. 8, p. 1, doi. 10.1002/mco2.642
By:
- Liu, Xuan;
- Zhou, Ming;
- Fang, Mujing;
- Xie, Ying;
- Chen, Peiwen;
- Chen, Rirong;
- Wu, Kun;
- Ye, Jianghui;
- Liu, Che;
- Zhu, Huachen;
- Cheng, Tong;
- Yuan, Lunzhi;
- Zhao, Hui;
- Guan, Yi;
- Xia, Ningshao
Publication type:
Article
A(H2N2) and A(H3N2) influenza pandemics elicited durable cross-reactive and protective antibodies against avian N2 neuraminidases.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49884-9
By:
- Liang, Zaolan;
- Lin, Xia;
- Sun, Lihong;
- Edwards, Kimberly M.;
- Song, Wenjun;
- Sun, Hailiang;
- Xie, Yanmin;
- Lin, Fangmei;
- Ling, Shiman;
- Liang, Tingting;
- Xiao, Biying;
- Wang, Jiaqi;
- Li, Min;
- Leung, Chin-Yu;
- Zhu, Huachen;
- Bhandari, Nisha;
- Varadarajan, Raghavan;
- Levine, Min Z.;
- Peiris, Malik;
- Webster, Robert
Publication type:
Article
Basketball Object Extraction Method Based on Image Segmentation Algorithm.
Published in:
Security & Communication Networks, 2022, p. 1, doi. 10.1155/2022/3021682
By:
- Zhu, Huachen;
- Liu, Long
Publication type:
Article
The emergence of pandemic influenza viruses.
Published in:
Protein & Cell, 2010, v. 1, n. 1, p. 9, doi. 10.1007/s13238-010-0008-z
By:
- Yi Guan;
- Vijaykrishna, Dhanasekaran;
- Bahl, Justin;
- Huachen Zhu;
- Jia Wang;
- Smith, Gavin J. D.
Publication type:
Article
Butyrate Protects against SARS-CoV-2-Induced Tissue Damage in Golden Hamsters.
Published in:
International Journal of Molecular Sciences, 2023, v. 24, n. 18, p. 14191, doi. 10.3390/ijms241814191
By:
- Yu, Huan;
- Yuan, Lunzhi;
- Yan, Zhigang;
- Zhou, Ming;
- Ye, Jianghui;
- Wu, Kun;
- Chen, Wenjia;
- Chen, Rirong;
- Xia, Ningshao;
- Guan, Yi;
- Zhu, Huachen
Publication type:
Article
Genetic diversity of the 2013-14 human isolates of influenza H7N9 in China.
Published in:
BMC Infectious Diseases, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12879-015-0829-8
By:
- Farooqui, Amber;
- Leon, Alberto J.;
- Linxi Huang;
- Suwu Wu;
- Yingmu Cai;
- Pengzhou Lin;
- Weihong Chen;
- Xibin Fang;
- Tiansheng Zeng;
- Yisu Liu;
- Li Zhang;
- Ting Su;
- Weibin Chen;
- Ghedin, Elodie;
- Huachen Zhu;
- Yi Guan;
- Kelvin, David J.
Publication type:
Article
Genetic diversity of the 2013-14 human isolates of influenza H7N9 in China.
Published in:
2015
By:
- Farooqui, Amber;
- Leon, Alberto J;
- Huang, Linxi;
- Wu, Suwu;
- Cai, Yingmu;
- Lin, Pengzhou;
- Chen, Weihong;
- Fang, Xibin;
- Zeng, Tiansheng;
- Liu, Yisu;
- Zhang, Li;
- Su, Ting;
- Chen, Weibin;
- Ghedin, Elodie;
- Zhu, Huachen;
- Guan, Yi;
- Kelvin, David J
Publication type:
journal article
Life course exposures continually shape antibody profiles and risk of seroconversion to influenza.
Published in:
PLoS Pathogens, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.ppat.1008635
By:
- Yang, Bingyi;
- Lessler, Justin;
- Zhu, Huachen;
- Jiang, Chao Qiang;
- Read, Jonathan M.;
- Hay, James A.;
- Kwok, Kin On;
- Shen, Ruiyin;
- Guan, Yi;
- Riley, Steven;
- Cummings, Derek A. T.
Publication type:
Article
Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia.
Published in:
PLoS Pathogens, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.ppat.1008191
By:
- Moncla, Louise H.;
- Bedford, Trevor;
- Dussart, Philippe;
- Horm, Srey Viseth;
- Rith, Sareth;
- Buchy, Philippe;
- Karlsson, Erik A.;
- Li, Lifeng;
- Liu, Yongmei;
- Zhu, Huachen;
- Guan, Yi;
- Friedrich, Thomas C.;
- Horwood, Paul F.
Publication type:
Article
ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data.
Published in:
Methods in Ecology & Evolution, 2017, v. 8, n. 1, p. 28, doi. 10.1111/2041-210X.12628
By:
- Yu, Guangchuang;
- Smith, David K.;
- Zhu, Huachen;
- Guan, Yi;
- Lam, Tommy Tsan‐Yuk;
- McInerny, Greg
Publication type:
Article

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