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An African origin for Mycobacterium bovis.
Published in:
Evolution, Medicine & Public Health, 2020, v. 2020, n. 1, p. 49, doi. 10.1093/emph/eoaa005
By:
- Loiseau, Chloé;
- Menardo, Fabrizio;
- Aseffa, Abraham;
- Hailu, Elena;
- Gumi, Balako;
- Ameni, Gobena;
- Berg, Stefan;
- Rigouts, Leen;
- Robbe-Austerman, Suelee;
- Zinsstag, Jakob;
- Gagneux, Sebastien;
- Brites, Daniela
Publication type:
Article
The relative transmission fitness of multidrug-resistant Mycobacterium tuberculosis in a drug resistance hotspot.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37719-y
By:
- Loiseau, Chloé;
- Windels, Etthel M.;
- Gygli, Sebastian M.;
- Jugheli, Levan;
- Maghradze, Nino;
- Brites, Daniela;
- Ross, Amanda;
- Goig, Galo;
- Reinhard, Miriam;
- Borrell, Sonia;
- Trauner, Andrej;
- Dötsch, Anna;
- Aspindzelashvili, Rusudan;
- Denes, Rebecca;
- Reither, Klaus;
- Beisel, Christian;
- Tukvadze, Nestani;
- Avaliani, Zaza;
- Stadler, Tanja;
- Gagneux, Sebastien
Publication type:
Article
HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa.
Published in:
PLoS Pathogens, 2024, v. 20, n. 5, p. 1, doi. 10.1371/journal.ppat.1011675
By:
- Windels, Etthel M.;
- Wampande, Eddie M.;
- Joloba, Moses L.;
- Boom, W. Henry;
- Goig, Galo A.;
- Cox, Helen;
- Hella, Jerry;
- Borrell, Sonia;
- Gagneux, Sebastien;
- Brites, Daniela;
- Stadler, Tanja
Publication type:
Article
Genetic Characterization and Population Structure of Drug-Resistant Mycobacterium tuberculosis Isolated from Brazilian Patients Using Whole-Genome Sequencing.
Published in:
Antibiotics (2079-6382), 2024, v. 13, n. 6, p. 496, doi. 10.3390/antibiotics13060496
By:
- Esteves, Leonardo Souza;
- Gomes, Lia Lima;
- Brites, Daniela;
- Fandinho, Fátima Cristina Onofre;
- Bhering, Marcela;
- Pereira, Márcia Aparecida da Silva;
- Conceição, Emilyn Costa;
- Salvato, Richard;
- Costa, Bianca Porphirio da;
- Medeiros, Reginalda Ferreira de Melo;
- Caldas, Paulo Cesar de Souza;
- Redner, Paulo;
- Dalcolmo, Margareth Pretti;
- Eldholm, Vegard;
- Gagneux, Sebastien;
- Rossetti, Maria Lucia;
- Kritski, Afrânio Lineu;
- Suffys, Philip Noel
Publication type:
Article
Locally Confined Clonal Complexes of Mycobacterium ulcerans in Two Buruli Ulcer Endemic Regions of Cameroon.
Published in:
PLoS Neglected Tropical Diseases, 2015, v. 9, n. 6, p. 1, doi. 10.1371/journal.pntd.0003802
By:
- Bolz, Miriam;
- Bratschi, Martin W.;
- Kerber, Sarah;
- Minyem, Jacques C.;
- Um Boock, Alphonse;
- Vogel, Moritz;
- Bayi, Pierre Franklin;
- Junghanss, Thomas;
- Brites, Daniela;
- Harris, Simon R.;
- Parkhill, Julian;
- Pluschke, Gerd;
- Lamelas Cabello, Araceli
Publication type:
Article
Locally Confined Clonal Complexes of Mycobacterium ulcerans in Two Buruli Ulcer Endemic Regions of Cameroon.
Published in:
PLoS Neglected Tropical Diseases, 2015, v. 9, n. 6, p. 1, doi. 10.1371/journal.pntd.0003802
By:
- Bolz, Miriam;
- Bratschi, Martin W.;
- Kerber, Sarah;
- Minyem, Jacques C.;
- Um Boock, Alphonse;
- Vogel, Moritz;
- Bayi, Pierre Franklin;
- Junghanss, Thomas;
- Brites, Daniela;
- Harris, Simon R.;
- Parkhill, Julian;
- Pluschke, Gerd;
- Lamelas Cabello, Araceli
Publication type:
Article
MORE THAN ONE WAY TO PRODUCE PROTEIN DIVERSITY: DUPLICATION AND LIMITED ALTERNATIVE SPLICING OF AN ADHESION MOLECULE GENE IN BASAL ARTHROPODS.
Published in:
Evolution, 2013, v. 67, n. 10, p. 2999, doi. 10.1111/evo.12179
By:
- Brites, Daniela;
- Brena, Carlo;
- Ebert, Dieter;
- Du Pasquier, Louis
Publication type:
Article
Population Genetics of Duplicated Alternatively Spliced Exons of the Dscam Gene in Daphnia and Drosophila.
Published in:
PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0027947
By:
- Brites, Daniela;
- Encinas-Viso, Francisco;
- Ebert, Dieter;
- Pasquier, Louis Du;
- Haag, Christoph R.
Publication type:
Article
Using population-specific add-on polymorphisms to improve genotype imputation in underrepresented populations.
Published in:
PLoS Computational Biology, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pcbi.1009628
By:
- Xu, Zhi Ming;
- Rüeger, Sina;
- Zwyer, Michaela;
- Brites, Daniela;
- Hiza, Hellen;
- Reinhard, Miriam;
- Rutaihwa, Liliana;
- Borrell, Sonia;
- Isihaka, Faima;
- Temba, Hosiana;
- Maroa, Thomas;
- Naftari, Rastard;
- Hella, Jerry;
- Sasamalo, Mohamed;
- Reither, Klaus;
- Portevin, Damien;
- Gagneux, Sebastien;
- Fellay, Jacques
Publication type:
Article
The Influence of HIV on the Evolution of Mycobacterium tuberculosis.
Published in:
Molecular Biology & Evolution, 2017, v. 34, n. 7, p. 1654, doi. 10.1093/molbev/msx107
By:
- Koch, Anastasia S.;
- Brites, Daniela;
- Stucki, David;
- Evans, Joanna C.;
- Seldon, Ronnett;
- Heekes, Alexa;
- Mulder, Nicola;
- Nicol, Mark;
- Oni, Tolu;
- Mizrahi, Valerie;
- Warner, Digby F.;
- Parkhill, Julian;
- Gagneux, Sebastien;
- Martin, Darren P.;
- Wilkinson, Robert J.
Publication type:
Article
Co-evolution of Mycobacterium tuberculosis and Homo sapiens.
Published in:
Immunological Reviews, 2015, v. 264, n. 1, p. 6, doi. 10.1111/imr.12264
By:
- Brites, Daniela;
- Gagneux, Sebastien
Publication type:
Article
Leaf phyllotaxis: Does it really affect light capture?
Published in:
Plant Ecology, 2004, v. 174, n. 1, p. 11, doi. 10.1023/B:VEGE.0000046053.23576.6b
By:
- Valladares, Fernando;
- Brites, Daniela
Publication type:
Article
Implications of opposite phyllotaxis for light interception efficiency of Mediterranean woody plants.
Published in:
Trees: Structure & Function, 2005, v. 19, n. 6, p. 671, doi. 10.1007/s00468-005-0431-6
By:
- Daniela Brites;
- Fernando Valladares
Publication type:
Article
The Dscam Homologue of the Crustacean Daphnia Is Diversified by Alternative Splicing Like in Insects.
Published in:
Molecular Biology & Evolution, 2008, v. 25, n. 7, p. 1429, doi. 10.1093/molbev/msn087
By:
- Brites, Daniela;
- McTaggart, Seanna;
- Morris, Krystalynne;
- Anderson, Jobriah;
- Thomas, Kelley;
- Colson, Isabelle;
- Fabbro, Thomas;
- Little, Tom J.;
- Ebert, Dieter;
- Du Pasquier, Louis
Publication type:
Article
Phylogenetic Analysis of Pyruvate-Ferredoxin Oxidoreductase, a Redox Enzyme Involved in the Pharmacological Activation of Nitro-Based Prodrugs in Bacteria and Protozoa.
Published in:
Biology (2079-7737), 2024, v. 13, n. 3, p. 178, doi. 10.3390/biology13030178
By:
- Duwor, Seth;
- Brites, Daniela;
- Mäser, Pascal
Publication type:
Article
Dscam1 in Pancrustacean Immunity: Current Status and a Look to the Future.
Published in:
Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.00662
By:
- Armitage, Sophie A. O.;
- Kurtz, Joachim;
- Brites, Daniela;
- Yuemei Dong;
- Du Pasquier, Louis;
- Han-Ching Wang
Publication type:
Article
The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima.
Published in:
PLoS Biology, 2014, v. 12, n. 11, p. 1, doi. 10.1371/journal.pbio.1002005
By:
- Chipman, Ariel D.;
- Ferrier, David E. K.;
- Brena, Carlo;
- Qu, Jiaxin;
- Hughes, Daniel S. T.;
- Schröder, Reinhard;
- Torres-Oliva, Montserrat;
- Znassi, Nadia;
- Jiang, Huaiyang;
- Almeida, Francisca C.;
- Alonso, Claudio R.;
- Apostolou, Zivkos;
- Aqrawi, Peshtewani;
- Arthur, Wallace;
- Barna, Jennifer C. J.;
- Blankenburg, Kerstin P.;
- Brites, Daniela;
- Capella-Gutiérrez, Salvador;
- Coyle, Marcus;
- Dearden, Peter K.
Publication type:
Article
The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy.
Published in:
Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1196-0
By:
- Trauner, Andrej;
- Qingyun Liu;
- Via, Laura E.;
- Xin Liu;
- Xianglin Ruan;
- Lili Liang;
- Huimin Shi;
- Ying Chen;
- Ziling Wang;
- Ruixia Liang;
- Wei Zhang;
- Wang Wei;
- Jingcai Gao;
- Gang Sun;
- Brites, Daniela;
- England, Kathleen;
- Guolong Zhang;
- Gagneux, Sebastien;
- Barry III, Clifton E.;
- Qian Gao
Publication type:
Article
Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2164-8
By:
- Menardo, Fabrizio;
- Loiseau, Chloé;
- Brites, Daniela;
- Coscolla, Mireia;
- Gygli, Sebastian M.;
- Rutaihwa, Liliana K.;
- Trauner, Andrej;
- Beisel, Christian;
- Borrell, Sonia;
- Gagneux, Sebastien
Publication type:
Article
Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches.
Published in:
Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29620-2
By:
- Otchere, Isaac Darko;
- Coscollá, Mireia;
- Sánchez-Busó, Leonor;
- Asante-Poku, Adwoa;
- Brites, Daniela;
- Loiseau, Chloe;
- Meehan, Conor;
- Osei-Wusu, Stephen;
- Forson, Audrey;
- Laryea, Clement;
- Yahayah, Abdallah Iddrisu;
- Baddoo, Akosua;
- Ansa, Gloria Akosua;
- Aboagye, Samuel Yaw;
- Asare, Prince;
- Borrell, Sonia;
- Gehre, Florian;
- Beckert, Patrick;
- Kohl, Thomas A.;
- N’dira, Sanoussi
Publication type:
Article
Insights into the genetic diversity of Mycobacterium tuberculosis in Tanzania.
Published in:
PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0206334
By:
- Rutaihwa, Liliana K.;
- Sasamalo, Mohamed;
- Jaleco, Aladino;
- Hella, Jerry;
- Kingazi, Ally;
- Kamwela, Lujeko;
- Kingalu, Amri;
- Malewo, Bryceson;
- Shirima, Raymond;
- Doetsch, Anna;
- Feldmann, Julia;
- Reinhard, Miriam;
- Borrell, Sonia;
- Brites, Daniela;
- Reither, Klaus;
- Doulla, Basra;
- Fenner, Lukas;
- Gagneux, Sebastien
Publication type:
Article
Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development.
Published in:
PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0214088
By:
- Borrell, Sònia;
- Trauner, Andrej;
- Brites, Daniela;
- Rigouts, Leen;
- Loiseau, Chloe;
- Coscolla, Mireia;
- Niemann, Stefan;
- De Jong, Bouke;
- Yeboah-Manu, Dorothy;
- Kato-Maeda, Midori;
- Feldmann, Julia;
- Reinhard, Miriam;
- Beisel, Christian;
- Gagneux, Sebastien
Publication type:
Article
The molecular clock of Mycobacterium tuberculosis.
Published in:
PLoS Pathogens, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.ppat.1008067
By:
- Menardo, Fabrizio;
- Duchêne, Sebastian;
- Brites, Daniela;
- Gagneux, Sebastien
Publication type:
Article
Bacterial diversity dominates variable macrophage responses of tuberculosis patients in Tanzania.
Published in:
Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-60001-0
By:
- Hiza, Hellen;
- Zwyer, Michaela;
- Hella, Jerry;
- Arbués, Ainhoa;
- Sasamalo, Mohamed;
- Borrell, Sonia;
- Xu, Zhi Ming;
- Ross, Amanda;
- Brites, Daniela;
- Fellay, Jacques;
- Reither, Klaus;
- Gagneux, Sébastien;
- Portevin, Damien
Publication type:
Article
Dispersal of Mycobacterium tuberculosis Driven by Historical European Trade in the South Pacific.
Published in:
Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02778
By:
- Mulholland, Claire V.;
- Shockey, Abigail C.;
- Aung, Htin L.;
- Cursons, Ray T.;
- O'Toole, Ronan F.;
- Gautam, Sanjay S.;
- Brites, Daniela;
- Gagneux, Sebastien;
- Roberts, Sally A.;
- Karalus, Noel;
- Cook, Gregory M.;
- Pepperell, Caitlin S.;
- Arcus, Vickery L.
Publication type:
Article
A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02820
By:
- Brites, Daniela;
- Loiseau, Chloé;
- Menardo, Fabrizio;
- Borrell, Sonia;
- Boniotti, Maria Beatrice;
- Warren, Robin;
- Dippenaar, Anzaan;
- Parsons, Sven David Charles;
- Beisel, Christian;
- Behr, Marcel A.;
- Fyfe, Janet A.;
- Coscolla, Mireia;
- Gagneux, Sebastien
Publication type:
Article
A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16626-6
By:
- Ngabonziza, Jean Claude Semuto;
- Loiseau, Chloé;
- Marceau, Michael;
- Jouet, Agathe;
- Menardo, Fabrizio;
- Tzfadia, Oren;
- Antoine, Rudy;
- Niyigena, Esdras Belamo;
- Mulders, Wim;
- Fissette, Kristina;
- Diels, Maren;
- Gaudin, Cyril;
- Duthoy, Stéphanie;
- Ssengooba, Willy;
- André, Emmanuel;
- Kaswa, Michel K.;
- Habimana, Yves Mucyo;
- Brites, Daniela;
- Affolabi, Dissou;
- Mazarati, Jean Baptiste
Publication type:
Article

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