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Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases.
- Published in:
- BMC Structural Biology, 2003, v. 3, p. 1, doi. 10.1186/1472-6807-3-1
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- Publication type:
- Article
Bacterial death and TRADD-N domains help define novel apoptosis and immunity mechanisms shared by prokaryotes and metazoans.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.70394
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- Publication type:
- Article
Gene flow and biological conflict systems in the origin and evolution of eukaryotes.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2012, v. 2, p. 1, doi. 10.3389/fcimb.2012.00089
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- Publication type:
- Article
Transposons to toxins: the provenance, architecture and diversification of a widespread class of eukaryotic effectors.
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- Nucleic Acids Research, 2016, v. 44, n. 8, p. 3513, doi. 10.1093/nar/gkw221
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- Publication type:
- Article
Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 22, p. 10633, doi. 10.1093/nar/gkv1267
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- Publication type:
- Article
Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 16, p. 7635, doi. 10.1093/nar/gkt573
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- Publication type:
- Article
Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 22, p. 9473, doi. 10.1093/nar/gkr691
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- Publication type:
- Article
A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 11, p. 4532, doi. 10.1093/nar/gkr036
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- Publication type:
- Article
Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 16, p. 5261, doi. 10.1093/nar/gkq265
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- Publication type:
- Article
The natural history of the WRKY–GCM1 zinc fingers and the relationship between transcription factors and transposons.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 22, p. 6505, doi. 10.1093/nar/gkl888
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- Publication type:
- Article
Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen.
- Published in:
- Nature Structural & Molecular Biology, 2009, v. 16, n. 7, p. 725, doi. 10.1038/nsmb.1619
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- Publication type:
- Article
Natural history of the E1-like superfamily: Implication for adenylation, sulfur transfer, and ubiquitin conjugation.
- Published in:
- Proteins, 2009, v. 75, n. 4, p. 895, doi. 10.1002/prot.22298
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- Publication type:
- Article
The emergence of catalytic and structural diversity within the beta-clip fold.
- Published in:
- Proteins, 2004, v. 55, n. 4, p. 977, doi. 10.1002/prot.20076
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- Publication type:
- Article
Adaptations of the helix-grip fold for ligand binding and catalysis in the START domain superfamily.
- Published in:
- Proteins, 2001, v. 43, n. 2, p. 134, doi. 10.1002/1097-0134(20010501)43:2<134::AID-PROT1025>3.0.CO;2-I
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- Publication type:
- Article
Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins.
- Published in:
- BMC Genomics, 2003, v. 4, p. 5, doi. 10.1186/1471-2164-4-5
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- Publication type:
- Article
The catalytic domains of thiamine triphosphatase and CyaB-like adenylyl cyclase define a novel superfamily of domains that bind organic phosphates.
- Published in:
- BMC Genomics, 2002, v. 3, p. 33, doi. 10.1186/1471-2164-3-33
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- Publication type:
- Article
Classification and evolutionary history of the single-strand annealing proteins, RecT, Redβ, ERF and RAD52.
- Published in:
- BMC Genomics, 2002, v. 3, p. 8, doi. 10.1186/1471-2164-3-8
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- Publication type:
- Article
Gene Networks and Chromatin and Transcriptional Regulation of the Phaseolin Promoter in Arabidopsis.
- Published in:
- Plant Cell, 2013, v. 25, n. 7, p. 2601, doi. 10.1105/tpc.113.112714
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- Publication type:
- Article
Functional Innovation in the Evolution of the Calcium-Dependent System of the Eukaryotic Endoplasmic Reticulum.
- Published in:
- Frontiers in Genetics, 2020, p. 1, doi. 10.3389/fgene.2020.00034
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- Publication type:
- Article
Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. 13, p. 3994, doi. 10.1093/nar/gki709
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- Publication type:
- Article
Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members.
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- Nucleic Acids Research, 2005, v. 33, n. 12, p. 3875, doi. 10.1093/nar/gki702
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- Publication type:
- Article
Comparative genomics of the FtsK–HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. 17, p. 5260, doi. 10.1093/nar/gkh828
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- Publication type:
- Article
Detection of novel members, structure–function analysis and evolutionary classification of the 2H phosphoesterase superfamily.
- Published in:
- Nucleic Acids Research, 2002, v. 30, n. 23, p. 5229, doi. 10.1093/nar/gkf645
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- Publication type:
- Article
Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase.
- Published in:
- Nature Immunology, 2007, v. 8, n. 6, p. 647, doi. 10.1038/ni1463
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- Publication type:
- Article
Multiple enzymatic activities of ParB/Srx superfamily mediate sexual conflict among conjugative plasmids.
- Published in:
- Nature Communications, 2014, v. 5, n. 10, p. 1, doi. 10.1038/ncomms6322
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- Publication type:
- Article
Apprehending the NAD + –ADPr-Dependent Systems in the Virus World.
- Published in:
- Viruses (1999-4915), 2022, v. 14, n. 9, p. 1977, doi. 10.3390/v14091977
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- Publication type:
- Article
Jumbo Phages: A Comparative Genomic Overview of Core Functions and Adaptions for Biological Conflicts.
- Published in:
- Viruses (1999-4915), 2021, v. 13, n. 1, p. 63, doi. 10.3390/v13010063
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- Publication type:
- Article
BEN: a novel domain in chromatin factors and DNA viral proteins.
- Published in:
- Bioinformatics, 2008, v. 24, n. 4, p. 458, doi. 10.1093/bioinformatics/btn007
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- Publication type:
- Article
The DOMON domains are involved in heme and sugar recognition.
- Published in:
- Bioinformatics, 2007, v. 23, n. 20, p. 2660, doi. 10.1093/bioinformatics/btm411
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- Publication type:
- Article
Functionally comparable but evolutionarily distinct nucleotide-targeting effectors help identify conserved paradigms across diverse immune systems.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 21, p. 11479, doi. 10.1093/nar/gkad879
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- Publication type:
- Article
Comprehensive classification of ABC ATPases and their functional radiation in nucleoprotein dynamics and biological conflict systems.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. 18, p. 10045, doi. 10.1093/nar/gkaa726
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- Publication type:
- Article
Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems.
- Published in:
- Biology Direct, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1745-6150-8-20
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- Publication type:
- Article
Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes.
- Published in:
- Biology Direct, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1745-6150-8-13
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- Publication type:
- Article
ALOG domains: provenance of plant homeotic and developmental regulators from the DNA-binding domain of a novel class of DIRS1-type retroposons.
- Published in:
- Biology Direct, 2012, v. 7, n. 1, p. 39, doi. 10.1186/1745-6150-7-39
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- Publication type:
- Article
Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics.
- Published in:
- Biology Direct, 2012, v. 7, n. 1, p. 18, doi. 10.1186/1745-6150-7-18
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- Publication type:
- Article
Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis.
- Published in:
- Biology Direct, 2010, v. 5, p. 48, doi. 10.1186/1745-6150-5-48
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- Publication type:
- Article
Presence of a classical RRM-fold palm domain inThg1-type 3'- 5'nucleic acid polymerases and theorigin of the GGDEF and CRISPR polymerasedomains.
- Published in:
- Biology Direct, 2010, v. 5, p. 43, doi. 10.1186/1745-6150-5-43
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- Publication type:
- Article
MutL homologs in restriction-modification systems and the origin of eukaryotic MORC ATPases.
- Published in:
- Biology Direct, 2008, v. 3, p. 1, doi. 10.1186/1745-6150-3-8
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- Publication type:
- Article
A novel superfamily containing the β-grasp fold involved in binding diverse soluble ligands.
- Published in:
- Biology Direct, 2007, v. 2, p. 4, doi. 10.1186/1745-6150-2-4
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- Publication type:
- Article
Small but versatile: the extraordinary functional and structural diversity of the β-grasp fold.
- Published in:
- Biology Direct, 2007, v. 2, p. 18, doi. 10.1186/1745-6150-2-18
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- Publication type:
- Article
Assessment of penetrance and expressivity of RNAi-mediated silencing of the Arabidopsis phytoene desaturase gene.
- Published in:
- New Phytologist, 2005, v. 167, n. 3, p. 751, doi. 10.1111/j.1469-8137.2005.01454.x
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- Publication type:
- Article
Adenine methylation in eukaryotes: Apprehending the complex evolutionary history and functional potential of an epigenetic modification.
- Published in:
- BioEssays, 2016, v. 38, n. 1, p. 27, doi. 10.1002/bies.201500104
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- Publication type:
- Article
A Nonhemolytic Group B Streptococcus Strain Exhibits Hypervirulence.
- Published in:
- 2018
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- Publication type:
- journal article
Bacterial GRAS domain proteins throw new light on gibberellic acid response mechanisms.
- Published in:
- Bioinformatics, 2012, v. 28, n. 19, p. 2407, doi. 10.1093/bioinformatics/bts464
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- Publication type:
- Article
Corrigendum: The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene.
- Published in:
- 2020
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- Publication type:
- Correction Notice
The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene.
- Published in:
- Frontiers in Microbiology, 2020, v. 10, p. 1, doi. 10.3389/fmicb.2019.03123
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- Publication type:
- Article