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- Title
Intertwining phylogenetic trees and networks.
- Authors
Schliep, Klaus; Potts, Alastair J.; Morrison, David A.; Grimm, Guido W.; Fitzjohn, Richard
- Abstract
The fields of phylogenetic tree and network inference have dramatically advanced in the past decade, but independently with few attempts to bridge them., Here we provide a framework, implemented in the phangorn library in R, to transfer information between trees and networks., This includes: (i) identifying and labelling equivalent tree branches and network edges, (ii) transferring tree branch support to network edges, and (iii) mapping bipartition support from a sample of trees (e.g. from bootstrapping or Bayesian inference) onto network edges., The ability to readily combine tree and network information should lead to more comprehensive evolutionary comparisons and inferences.
- Subjects
PHYLOGENETIC models; QUANTITATIVE research; INFERENTIAL statistics; BIFURCATION theory; TOPOLOGY; VISUALIZATION; COMPUTER software
- Publication
Methods in Ecology & Evolution, 2017, Vol 8, Issue 10, p1212
- ISSN
2041-210X
- Publication type
Article
- DOI
10.1111/2041-210X.12760