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Gut microbial composition in patients with atrial fibrillation: effects of diet and drugs.
- Published in:
- Heart & Vessels, 2021, v. 36, n. 1, p. 105, doi. 10.1007/s00380-020-01669-y
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- Publication type:
- Article
Temporal dynamics from phosphoproteomics using endoscopic biopsy specimens provides new therapeutic targets in stage IV gastric cancer.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-08430-7
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- Publication type:
- Article
Association of skeletal muscle function, quantity, and quality with gut microbiota in Japanese adults: A cross‐sectional study.
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- Geriatrics & Gerontology International, 2024, v. 24, n. 1, p. 53, doi. 10.1111/ggi.14751
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- Publication type:
- Article
Integrative Analysis Reveals Common and Unique Roles of Tetraspanins in Fibrosis and Emphysema.
- Published in:
- Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.585998
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- Publication type:
- Article
B cell‐intrinsic MyD88 signaling controls IFN‐γ‐mediated early IgG2c class switching in mice in response to a particulate adjuvant.
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- European Journal of Immunology, 2019, v. 49, n. 9, p. 1433, doi. 10.1002/eji.201848084
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- Publication type:
- Article
The Trends and Future Prospective of In Silico Models from the Viewpoint of ADME Evaluation in Drug Discovery.
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- Pharmaceutics, 2023, v. 15, n. 11, p. 2619, doi. 10.3390/pharmaceutics15112619
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- Publication type:
- Article
Identification of Human Gut Microbiome Associated with Enterolignan Production.
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- Micromachines, 2022, v. 13, n. 11, p. 2169, doi. 10.3390/microorganisms10112169
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- Article
Structure of the periplasmic domain of Pseudomonas aeruginosa TolA: evidence for an evolutionary relationship with the TonB transporter protein.
- Published in:
- EMBO Journal, 2002, v. 21, n. 16, p. 4207, doi. 10.1093/emboj/cdf417
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- Publication type:
- Article
Distinct Age-Specific miRegulome Profiling of Isolated Small and Large Intestinal Epithelial Cells in Mice.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 7, p. 3544, doi. 10.3390/ijms22073544
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- Publication type:
- Article
Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks.
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- BMC Structural Biology, 2009, v. 9, p. 1, doi. 10.1186/1472-6807-9-30
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- Publication type:
- Article
Effect of resistance training and chicken meat on muscle strength and mass and the gut microbiome of older women: A randomized controlled trial.
- Published in:
- Physiological Reports, 2024, v. 12, n. 12, p. 1, doi. 10.14814/phy2.16100
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- Publication type:
- Article
Temporal dynamics from phosphoproteomics using endoscopic biopsy specimens provides new therapeutic targets in stage IV gastric cancer.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-08430-7
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- Publication type:
- Article
Integrating sequence and gene expression information predicts genome-wide DNA-binding proteins and suggests a cooperative mechanism.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 1, p. 54, doi. 10.1093/nar/gkx1166
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- Publication type:
- Article
PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. D1, p. D392, doi. 10.1093/nar/gku1144
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- Publication type:
- Article
Identification and classification of bacterial Type III toxin–antitoxin systems encoded in chromosomal and plasmid genomes.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 13, p. 6158, doi. 10.1093/nar/gks231
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- Publication type:
- Article
CCRXP: exploring clusters of conserved residues in protein structures.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W398, doi. 10.1093/nar/gkq360
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- Publication type:
- Article
TargetMine 2022: a new vision into drug target analysis.
- Published in:
- Bioinformatics, 2022, v. 38, n. 18, p. 4454, doi. 10.1093/bioinformatics/btac507
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- Publication type:
- Article
Profiles of microRNA networks in intestinal epithelial cells in a mouse model of colitis.
- Published in:
- Scientific Reports, 2015, p. 18174, doi. 10.1038/srep18174
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- Publication type:
- Article
Categorization of the Ocular Microbiome in Japanese Stevens–Johnson Syndrome Patients With Severe Ocular Complications.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2021, v. 11, p. 1, doi. 10.3389/fcimb.2021.741654
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- Publication type:
- Article
Developing a Kinase-Specific Target Selection Method Using a Structure-Based Machine Learning Approach.
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- Advances & Applications in Bioinformatics & Chemistry, 2020, v. 13, p. 27, doi. 10.2147/AABC.S278900
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- Publication type:
- Article
BIG3 Inhibits the Estrogen-Dependent Nuclear Translocation of PHB2 via Multiple Karyopherin-Alpha Proteins in Breast Cancer Cells.
- Published in:
- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0127707
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- Publication type:
- Article
Correction: Pathway-Based Analysis of Genome-Wide siRNA Screens Reveals the Regulatory Landscape of App Processing.
- Published in:
- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129641
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- Publication type:
- Article
Pathway-Based Analysis of Genome-Wide siRNA Screens Reveals the Regulatory Landscape of App Processing.
- Published in:
- PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0115369
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- Publication type:
- Article
Integrated Pathway Clusters with Coherent Biological Themes for Target Prioritisation.
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- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099030
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- Publication type:
- Article
Prediction of Detailed Enzyme Functions and Identification of Specificity Determining Residues by Random Forests.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0084623
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- Publication type:
- Article
The Chemotherapeutic Agent DMXAA as a Unique IRF3-Dependent Type-2 Vaccine Adjuvant.
- Published in:
- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060038
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- Publication type:
- Article
Partner-Aware Prediction of Interacting Residues in Protein-Protein Complexes from Sequence Data.
- Published in:
- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0029104
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- Publication type:
- Article
TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery.
- Published in:
- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017844
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- Publication type:
- Article
Co-expression analysis to identify key modules and hub genes associated with COVID-19 in platelets.
- Published in:
- BMC Medical Genomics, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s12920-022-01222-y
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- Publication type:
- Article
High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations.
- Published in:
- Proteins, 2014, v. 82, n. 8, p. 1624, doi. 10.1002/prot.24591
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- Publication type:
- Article
Conformational changes in DNA-binding proteins: Relationships with precomplex features and contributions to specificity and stability.
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- Proteins, 2014, v. 82, n. 5, p. 841, doi. 10.1002/prot.24462
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- Publication type:
- Article
Computational design, construction, and characterization of a set of specificity determining residues in protein-protein interactions.
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- Proteins, 2012, v. 80, n. 10, p. 2426, doi. 10.1002/prot.24127
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- Publication type:
- Article
A structural dissection of amino acid substitutions in helical transmembrane proteins.
- Published in:
- Proteins, 2010, v. 78, n. 14, p. 2895, doi. 10.1002/prot.22809
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- Publication type:
- Article
Relationships between functional subclasses and information contained in active-site and ligand-binding residues in diverse superfamilies.
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- Proteins, 2010, v. 78, n. 10, p. 2369, doi. 10.1002/prot.22750
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- Article
Lipophobicity and the residue environments of the transmembrane α-helical bundle.
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- Proteins, 2009, v. 74, n. 1, p. 32, doi. 10.1002/prot.22130
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- Publication type:
- Article
The guanidino-group modifying enzymes: Structural basis for their diversity and commonality.
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- Proteins, 2006, v. 64, n. 4, p. 1010, doi. 10.1002/prot.20863
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- Publication type:
- Article
Functional restraints on the patterns of amino acid substitutions: Application to sequence-structure homology recognition.
- Published in:
- Proteins, 2005, v. 61, n. 4, p. 722, doi. 10.1002/prot.20617
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- Publication type:
- Article
A family of proteins related to Spätzle, the toll receptor ligand, are encoded in the Drosophila genome.
- Published in:
- Proteins, 2001, v. 45, n. 1, p. 71, doi. 10.1002/prot.1125
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- Publication type:
- Article
An iterative structure-assisted approach to sequence alignment and comparative modeling.
- Published in:
- Proteins, 1999, v. 37, n. S3, p. 55, doi. 10.1002/(SICI)1097-0134(1999)37:3+<55::AID-PROT8>3.0.CO;2-B
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- Publication type:
- Article
Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts.
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- BMC Microbiology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12866-021-02215-0
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- Publication type:
- Article
Two distinct effector memory cell populations of WT1 (Wilms' tumor gene 1)-specific cytotoxic T lymphocytes in acute myeloid leukemia patients.
- Published in:
- Cancer Immunology, Immunotherapy, 2015, v. 64, n. 7, p. 791, doi. 10.1007/s00262-015-1683-7
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- Publication type:
- Article
Data Curation can Improve the Prediction Accuracy of Metabolic Intrinsic Clearance.
- Published in:
- Molecular Informatics, 2019, v. 38, n. 1/2, p. N.PAG, doi. 10.1002/minf.201800086
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- Publication type:
- Article
Cover Picture: Data Curation can Improve the Prediction Accuracy of Metabolic Intrinsic Clearance (Mol. Inf. 1‐2/2019).
- Published in:
- Molecular Informatics, 2019, v. 38, n. 1/2, p. N.PAG, doi. 10.1002/minf.201980101
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- Publication type:
- Article
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework.
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- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw009
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- Publication type:
- Article
MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data.
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- PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0243609
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- Publication type:
- Article
Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-213
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- Publication type:
- Article
Prediction of dinucleotide-specific RNA-binding sites in proteins.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S5
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- Publication type:
- Article
Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membraneproteins.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 533, doi. 10.1186/1471-2105-11-533
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- Publication type:
- Article
Amino-Acid Substitutions In Membrane Proteins: Applications To Homology Recognition And Comparative Modelling.
- Published in:
- 2005
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- Publication type:
- Conference Paper/Materials
Structural dynamics of the N‐terminal SH2 domain of PI3K in its free and CD28‐bound states.
- Published in:
- FEBS Journal, 2023, v. 290, n. 9, p. 2366, doi. 10.1111/febs.16666
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- Publication type:
- Article