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Glioma immune microenvironment composition calculator (GIMiCC): a method of estimating the proportions of eighteen cell types from DNA methylation microarray data.
- Published in:
- Acta Neuropathologica Communications, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40478-024-01874-0
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- Article
NLRP3 expression in mesencephalic neurons and characterization of a rare NLRP3 polymorphism associated with decreased risk of Parkinson's disease.
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- NPJ Parkinson's Disease, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41531-018-0061-5
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- Article
DNA methylation as a pharmacodynamic marker of glucocorticoid response and glioma survival.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33215-x
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- Article
Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with lung macrophages in cystic fibrosis.
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- Clinical Epigenetics, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13148-018-0580-2
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- Article
Immunomethylomic approach to explore the blood neutrophil lymphocyte ratio (NLR) in glioma survival.
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- Clinical Epigenetics, 2017, v. 9, p. 1, doi. 10.1186/s13148-017-0316-8
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- Article
Pan-Cancer Analysis Reveals Differential Susceptibility of Bidirectional Gene Promoters to DNA Methylation, Somatic Mutations, and Copy Number Alterations.
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- International Journal of Molecular Sciences, 2018, v. 19, n. 8, p. 2296, doi. 10.3390/ijms19082296
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- Article
Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL).
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-0943-7
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- Article
Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27864-7
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- Article
Pro-apoptotic TP53 homolog TAp63 is repressed via epigenetic silencing and B-cell receptor signalling in chronic lymphocytic leukaemia.
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- British Journal of Haematology, 2013, v. 163, n. 5, p. 590, doi. 10.1111/bjh.12580
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- Article
HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data.
- Published in:
- 2022
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- Publication type:
- journal article
Recursively partitioned mixture model clustering of DNA methylation data using biologically informed correlation structures.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2013, v. 12, n. 2, p. 225, doi. 10.1515/sagmb-2012-0068
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- Article
Tumor microenvironment deconvolution identifies cell-type-independent aberrant DNA methylation and gene expression in prostate cancer.
- Published in:
- Clinical Epigenetics, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13148-023-01609-3
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- Article
Assessment of immune cell profiles among post-menopausal women in the Women's Health Initiative using DNA methylation-based methods.
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- Clinical Epigenetics, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13148-023-01488-8
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- Article
Comparative analysis of the DNA methylation landscape in CD4, CD8, and B memory lineages.
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- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01399-0
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- Article
Evaluation of cross-platform compatibility of a DNA methylation-based glucocorticoid response biomarker.
- Published in:
- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01352-1
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- Publication type:
- Article
A core of differentially methylated CpG loci in gMDSCs isolated from neonatal and adult sources.
- Published in:
- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01247-1
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- Publication type:
- Article
Immune profiles and DNA methylation alterations related with non-muscle-invasive bladder cancer outcomes.
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- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01234-6
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- Article
Widespread redundancy in -omics profiles of cancer mutation states.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02705-y
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- Publication type:
- Article
Lineage plasticity enables low-ER luminal tumors to evolve and gain basal-like traits.
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- Breast Cancer Research, 2023, v. 25, n. 1, p. 1, doi. 10.1186/s13058-023-01621-8
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- Article
A Coding Variant in TMC8 (EVER2) Is Associated with High Risk HPV Infection and Head and Neck Cancer Risk.
- Published in:
- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123716
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- Article
<i>RNASEL</i> and <i>MIR146A</i> SNP-SNP Interaction as a Susceptibility Factor for Non-Melanoma Skin Cancer.
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- PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0093602
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- Publication type:
- Article
Acute Hypersensitivity of Pluripotent Testicular Cancer- Derived Embryonal Carcinoma to Low-Dose 5-Aza Deoxycytidine Is Associated with Global DNA Damage- Associated p53 Activation, Anti-Pluripotency and DNA Demethylation.
- Published in:
- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0053003
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- Article
Patterns and Possible Roles of LINE-1 Methylation Changes in Smoke-Exposed Epithelia.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045292
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- Publication type:
- Article
DNA Methylation Profiles of Airway Epithelial Cells and PBMCs from Healthy, Atopic and Asthmatic Children.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0044213
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- Article
Unlike Pancreatic Cancer Cells Pancreatic Cancer Associated Fibroblasts Display Minimal Gene Induction after 5-Aza-2'-Deoxycytidine.
- Published in:
- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0043456
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- Publication type:
- Article
Integrative DNA Methylation and Gene Expression Analyses Identify DNA Packaging and Epigenetic Regulatory Genes Associated with Low Motility Sperm.
- Published in:
- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0020280
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- Article
Identification of Methylated Genes Associated with Aggressive Bladder Cancer.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012334
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- Publication type:
- Article
Genetic and Epigenetic Somatic Alterations in Head and Neck Squamous Cell Carcinomas Are Globally Coordinated but Not Locally Targeted.
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- PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009651
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- Article
Association of secondhand smoke exposures with DNA methylation in bladder carcinomas.
- Published in:
- 2011
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- Publication type:
- journal article
Human milk-associated bacterial communities associate with the infant gut microbiome over the first year of life.
- Published in:
- Frontiers in Microbiology, 2023, p. 01, doi. 10.3389/fmicb.2023.1164553
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- Article
Molecular and epigenetic profiles of BRCA1-like hormone-receptor-positive breast tumors identified with development and application of a copy-number-based classifier.
- Published in:
- 2019
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- Publication type:
- journal article
Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age.
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- 2017
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- Publication type:
- journal article
Asbestos Burden Predicts Survival in Pleural Mesothelioma.
- Published in:
- Environmental Health Perspectives, 2008, v. 116, n. 6, p. 723, doi. 10.1289/ehp.11151
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- Article
DNA methylation arrays as surrogate measures of cell mixture distribution.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 86, doi. 10.1186/1471-2105-13-86
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- Publication type:
- Article
Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-365
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- Publication type:
- Article
Intraoperative margin assessment for basal cell carcinoma with deep learning and histologic tumor mapping to surgical site.
- Published in:
- NPJ Precision Oncology, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41698-023-00477-7
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- Article
A phase 1 study of combined guadecitabine and cisplatin in platinum refractory germ cell cancer.
- Published in:
- Cancer Medicine, 2021, v. 10, n. 1, p. 156, doi. 10.1002/cam4.3583
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- Article
Human polyomaviruses and incidence of cutaneous squamous cell carcinoma in the New Hampshire skin cancer study.
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- Cancer Medicine, 2016, v. 5, n. 6, p. 1239, doi. 10.1002/cam4.674
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- Publication type:
- Article
Let-7 micro RNA-binding-site polymorphism in the 3′ UTR of KRAS and colorectal cancer outcome: a systematic review and meta-analysis.
- Published in:
- Cancer Medicine, 2014, v. 3, n. 5, p. 1385, doi. 10.1002/cam4.279
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- Publication type:
- Article
A deep learning algorithm to detect cutaneous squamous cell carcinoma on frozen sections in Mohs micrographic surgery: A retrospective assessment.
- Published in:
- Experimental Dermatology, 2024, v. 33, n. 1, p. 1, doi. 10.1111/exd.14949
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- Publication type:
- Article
DNA hypermethylation profiles associated with glioma subtypes and EZH2 and IGFBP2 mRNA expression.
- Published in:
- Neuro-Oncology, 2011, v. 13, n. 3, p. 280, doi. 10.1093/neuonc/noq190
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- Publication type:
- Article
DNA methylation biomarkers for noninvasive detection of triple‐negative breast cancer using liquid biopsy.
- Published in:
- International Journal of Cancer, 2023, v. 152, n. 5, p. 1025, doi. 10.1002/ijc.34337
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- Publication type:
- Article
Seroepidemiology of Human Polyomaviruses in a US Population.
- Published in:
- American Journal of Epidemiology, 2016, v. 183, n. 1, p. 61, doi. 10.1093/aje/kwv155
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- Article
Hydroxymethylation is uniquely distributed within term placenta, and is associated with gene expression.
- Published in:
- FASEB Journal, 2016, v. 30, n. 8, p. 2874, doi. 10.1096/fj.201600310R
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- Article
MethylNet: an automated and modular deep learning approach for DNA methylation analysis.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3443-8
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- Publication type:
- Article
Human cytomegalovirus alters immune cell profile with potential implications for patient survival in head and neck cancer.
- Published in:
- Carcinogenesis, 2022, v. 43, n. 5, p. 430, doi. 10.1093/carcin/bgac021
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- Publication type:
- Article
Genome-scale identification of microRNA-related SNPs associated with risk of head and neck squamous cell carcinoma.
- Published in:
- Carcinogenesis, 2017, v. 38, n. 10, p. 986, doi. 10.1093/carcin/bgx056
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- Publication type:
- Article
The role of TP53 and MDM2 polymorphisms in TP53 mutagenesis and risk of non-melanoma skin cancer.
- Published in:
- Carcinogenesis, 2011, v. 32, n. 3, p. 327, doi. 10.1093/carcin/bgq256
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- Publication type:
- Article
Genetic variation in the vitamin C transporter, SLC23A2, modifies the risk of HPV16-associated head and neck cancer.
- Published in:
- Carcinogenesis, 2009, v. 30, n. 6, p. 977, doi. 10.1093/carcin/bgp076
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- Publication type:
- Article
A let-7 microRNA-binding site polymorphism in the KRAS 3 UTR is associated with reduced survival in oral cancers.
- Published in:
- Carcinogenesis, 2009, v. 30, n. 6, p. 1003, doi. 10.1093/carcin/bgp099
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- Publication type:
- Article