Found: 31
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DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 7, p. e103, doi. 10.1093/nar/gkq021
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- Article
The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation.
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- BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-01123-z
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- Article
LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell.
- Published in:
- Scientific Reports, 2017, p. 44598, doi. 10.1038/srep44598
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- Article
Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02658-2
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- Article
Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2486-8
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- Article
Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12927-7
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- Article
An RNAi supplemented diet as a reverse genetics tool to control bluegreen aphid, a major pest of legumes.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-58442-4
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- Article
A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis.
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- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 6, p. 1, doi. 10.1093/g3journal/jkad077
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- Article
A chromosome-level, fully phased genome assembly of the oat crown rust fungus Puccinia coronata f. sp. avenae: a resource to enable comparative genomics in the cereal rusts.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 8, p. 1, doi. 10.1093/g3journal/jkac149
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- Article
Austropuccinia psidii, causing myrtle rust, has a gigabase-sized genome shaped by transposable elements.
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- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 3, p. 1, doi. 10.1093/g3journal/jkaa015
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- Article
Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes.
- Published in:
- PLoS ONE, 2019, v. 14, n. 12, p. 1, doi. 10.1371/journal.pone.0226106
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- Article
Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat.
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- Genome Biology & Evolution, 2020, v. 12, n. 5, p. 597, doi. 10.1093/gbe/evaa071
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- Article
Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity.
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- Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1613, doi. 10.1093/gbe/evv092
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- Article
Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi.
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- PLoS Pathogens, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.ppat.1004806
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- Article
A functional genomics approach to dissect spotted alfalfa aphid resistance in Medicago truncatula.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-78904-z
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- Article
AvrSr27 is a zinc‐bound effector with a modular structure important for immune recognition.
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- New Phytologist, 2024, v. 243, n. 1, p. 314, doi. 10.1111/nph.19801
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- Article
Long reads and Hi‐C sequencing illuminate the two‐compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis.
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- New Phytologist, 2022, v. 233, n. 3, p. 1097, doi. 10.1111/nph.17842
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- Article
The crystal structure of SnTox3 from the necrotrophic fungus Parastagonospora nodorum reveals a unique effector fold and provides insight into Snn3 recognition and pro‐domain protease processing of fungal effectors.
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- New Phytologist, 2021, v. 231, n. 6, p. 2282, doi. 10.1111/nph.17516
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- Article
Machine learning in plant–pathogen interactions: empowering biological predictions from field scale to genome scale.
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- New Phytologist, 2020, v. 228, n. 1, p. 35, doi. 10.1111/nph.15771
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- Article
Identification and profiling of narrow-leafed lupin (Lupinus angustifolius) microRNAs during seed development.
- Published in:
- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5521-8
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- Article
Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen <i>Rhizoctonia solani</i> AG8.
- Published in:
- PLoS Genetics, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.pgen.1004281
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- Article
ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning.
- Published in:
- New Phytologist, 2018, v. 217, n. 4, p. 1764, doi. 10.1111/nph.14946
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- Article
E ffectorP: predicting fungal effector proteins from secretomes using machine learning.
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- New Phytologist, 2016, v. 210, n. 2, p. 743, doi. 10.1111/nph.13794
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- Article
Haplotype‐phased and chromosome‐level genome assembly of Puccinia polysora, a giga‐scale fungal pathogen causing southern corn rust.
- Published in:
- Molecular Ecology Resources, 2023, v. 23, n. 3, p. 601, doi. 10.1111/1755-0998.13739
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- Article
A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-807
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- Article
Predicting pseudoknotted structures across two RNA sequences.
- Published in:
- Bioinformatics, 2012, v. 28, n. 23, p. 3058, doi. 10.1093/bioinformatics/bts575
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- Article
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0.
- Published in:
- Molecular Plant Pathology, 2018, v. 19, n. 9, p. 2094, doi. 10.1111/mpp.12682
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- Article
Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici.
- Published in:
- Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00205
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- Article
Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.
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- Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.01168
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- Article
Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes.
- Published in:
- Frontiers in Plant Science, 2015, v. 5, p. 1, doi. 10.3389/fpls.2014.00759
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- Publication type:
- Article
Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors.
- Published in:
- Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00372
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- Article