Found: 85
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Integrative meta-omics in Galaxy and beyond.
- Published in:
- Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00514-9
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- Publication type:
- Article
Anatomy of BioJS, an open source community for the life sciences.
- Published in:
- 2015
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- Publication type:
- Product Review
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W11, doi. 10.1093/nar/gky504
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- Publication type:
- Article
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W537, doi. 10.1093/nar/gky379
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- Publication type:
- Article
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. W1, p. W560, doi. 10.1093/nar/gkx409
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- Publication type:
- Article
deepTools2: a next generation web server for deep-sequencing data analysis.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W160, doi. 10.1093/nar/gkw257
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- Publication type:
- Article
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W3, doi. 10.1093/nar/gkw343
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- Publication type:
- Article
deepTools: a flexible platform for exploring deep-sequencing data.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. W1, p. W187, doi. 10.1093/nar/gku365
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- Publication type:
- Article
StreptomeDB: a resource for natural compounds isolated from Streptomyces species.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D1130, doi. 10.1093/nar/gks1253
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- Publication type:
- Article
RHYTHM—a server to predict the orientation of transmembrane helices in channels and membrane-coils.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W575, doi. 10.1093/nar/gkp418
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- Publication type:
- Article
SuperLooper—a prediction server for the modeling of loops in globular and membrane proteins.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W571, doi. 10.1093/nar/gkp338
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- Publication type:
- Article
SuperToxic: a comprehensive database of toxic compounds.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D295, doi. 10.1093/nar/gkn850
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- Publication type:
- Article
Voronoia: analyzing packing in protein structures.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D393, doi. 10.1093/nar/gkn769
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- Publication type:
- Article
SuperScent—a database of flavors and scents.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D291, doi. 10.1093/nar/gkn695
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- Publication type:
- Article
Pluripotency factors determine gene expression repertoire at zygotic genome activation.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28434-1
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- Publication type:
- Article
A proteomics sample metadata representation for multiomics integration and big data analysis.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26111-3
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- Publication type:
- Article
Ready-to-use public infrastructure for global SARS-CoV-2 monitoring.
- Published in:
- 2021
- By:
- Publication type:
- Letter
DOT1L Activity Promotes Proliferation and Protects Cortical Neural Stem Cells from Activation of ATF4-DDIT3-Mediated ER Stress In Vitro.
- Published in:
- Stem Cells, 2016, v. 34, n. 1, p. 233, doi. 10.1002/stem.2187
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- Publication type:
- Article
Autosomal dominant immune dysregulation syndrome in humans with CTLA4 mutations.
- Published in:
- Nature Medicine, 2014, v. 20, n. 12, p. 1410, doi. 10.1038/nm.3746
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- Publication type:
- Article
"Be sustainable": EOSC‐Life recommendations for implementation of FAIR principles in life science data handling.
- Published in:
- EMBO Journal, 2023, v. 42, n. 23, p. 1, doi. 10.15252/embj.2023115008
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- Publication type:
- Article
DIMet: an open-source tool for differential analysis of targeted isotope-labeled metabolomics data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae282
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- Publication type:
- Article
Robust and efficient single-cell Hi-C clustering with approximate k-nearest neighbor graphs.
- Published in:
- Bioinformatics, 2021, v. 37, n. 22, p. 4006, doi. 10.1093/bioinformatics/btab394
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- Publication type:
- Article
SARS-CoV-2 sequence submission tool for the European Nucleotide Archive.
- Published in:
- Bioinformatics, 2021, v. 37, n. 21, p. 3983, doi. 10.1093/bioinformatics/btab421
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- Publication type:
- Article
Scool: a new data storage format for single-cell Hi-C data.
- Published in:
- Bioinformatics, 2021, v. 37, n. 14/15, p. 2053, doi. 10.1093/bioinformatics/btaa924
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- Publication type:
- Article
pyGenomeTracks: reproducible plots for multivariate genomic datasets.
- Published in:
- Bioinformatics, 2021, v. 37, n. 3, p. 422, doi. 10.1093/bioinformatics/btaa692
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- Publication type:
- Article
GRIN3B missense mutation as an inherited risk factor for schizophrenia: whole-exome sequencing in a family with a familiar history of psychotic disorders.
- Published in:
- Genetics Research, 2017, v. 99, p. N.PAG, doi. 10.1017/S0016672316000148
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- Publication type:
- Article
Training Infrastructure as a Service.
- Published in:
- GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad048
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- Publication type:
- Article
An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy.
- Published in:
- GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad028
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- Publication type:
- Article
Loop detection using Hi-C data with HiCExplorer.
- Published in:
- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac061
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- Publication type:
- Article
Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework.
- Published in:
- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac005
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- Publication type:
- Article
ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data.
- Published in:
- GigaScience, 2021, v. 10, n. 2, p. 1, doi. 10.1093/gigascience/giaa158
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- Publication type:
- Article
Tool recommender system in Galaxy using deep learning.
- Published in:
- GigaScience, 2021, v. 10, n. 1, p. 1, doi. 10.1093/gigascience/giaa152
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- Publication type:
- Article
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy.
- Published in:
- GigaScience, 2020, v. 9, n. 10, p. 1, doi. 10.1093/gigascience/giaa105
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- Publication type:
- Article
Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy.
- Published in:
- GigaScience, 2020, v. 9, n. 5, p. N.PAG, doi. 10.1093/gigascience/giaa049
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- Publication type:
- Article
GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering.
- Published in:
- GigaScience, 2019, v. 8, n. 12, p. N.PAG, doi. 10.1093/gigascience/giz150
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- Publication type:
- Article
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy.
- Published in:
- GigaScience, 2019, v. 8, n. 12, p. N.PAG, doi. 10.1093/gigascience/giz143
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- Publication type:
- Article
Software engineering for scientific big data analysis.
- Published in:
- GigaScience, 2019, v. 8, n. 5, p. N.PAG, doi. 10.1093/gigascience/giz054
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- Publication type:
- Article
ReGaTE: Registration of Galaxy Tools in Elixir.
- Published in:
- GigaScience, 2017, v. 6, n. 6, p. 1, doi. 10.1093/gigascience/gix022
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- Publication type:
- Article
PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research.
- Published in:
- Plant Journal, 2023, v. 116, n. 4, p. 974, doi. 10.1111/tpj.16474
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- Publication type:
- Article
Non‐coding RNAs underlying the pathophysiological links between type 2 diabetes and pancreatic cancer: A systematic review.
- Published in:
- Journal of Diabetes Investigation, 2022, v. 13, n. 3, p. 405, doi. 10.1111/jdi.13727
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- Publication type:
- Article
Characterization and Phylogenetic Analysis of the Mitochondrial Genome of <i>Glarea lozoyensis</i> Indicates High Diversity within the Order Helotiales.
- Published in:
- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074792
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- Publication type:
- Article
Echinocandin B biosynthesis: a biosynthetic cluster from Aspergillus nidulans NRRL 8112 and reassembly of the subclusters Ecd and Hty from Aspergillus pachycristatus NRRL 11440 reveals a single coherent gene cluster.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2885-x
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- Publication type:
- Article
Transformer-based tool recommendation system in Galaxy.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05573-w
- By:
- Publication type:
- Article
Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05389-8
- By:
- Publication type:
- Article
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02762-z
- By:
- Publication type:
- Article
ChemicalToolBoX and its application on the study of the drug like and purchasable space.
- Published in:
- 2014
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- Publication type:
- Abstract
Dynamic information system for small molecules.
- Published in:
- 2014
- By:
- Publication type:
- Abstract
Survey of metaproteomics software tools for functional microbiome analysis.
- Published in:
- PLoS ONE, 2020, v. 15, n. 11, p. 1, doi. 10.1371/journal.pone.0241503
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- Publication type:
- Article
Ten simple rules for making a software tool workflow-ready.
- Published in:
- PLoS Computational Biology, 2022, v. 18, n. 3, p. 1, doi. 10.1371/journal.pcbi.1009823
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- Publication type:
- Article
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.
- Published in:
- Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac061
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- Publication type:
- Article