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Conservation of the Exon-Intron Structure of Long Intergenic Non-Coding RNA Genes in Eutherian Mammals.
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- Life (2075-1729), 2016, v. 6, n. 3, p. 27, doi. 10.3390/life6030027
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DNA Methylation, Deamination, and Translesion Synthesis Combine to Generate Footprint Mutations in Cancer Driver Genes in B-Cell Derived Lymphomas and Other Cancers.
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- Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.671866
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- Article
The Functional Consequences of the Novel Ribosomal Pausing Site in SARS-CoV-2 Spike Glycoprotein RNA.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 12, p. 6490, doi. 10.3390/ijms22126490
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- Article
Analysis of Stop Codons within Prokaryotic Protein-Coding Genes Suggests Frequent Readthrough Events.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 4, p. 1876, doi. 10.3390/ijms22041876
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Crossing fitness valleys via double substitutions within codons.
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- BMC Biology, 2019, v. 17, n. 1, p. 1, doi. 10.1186/s12915-019-0727-4
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- Article
Template switching and duplications in SARS-CoV-2 genomes give rise to insertion variants that merit monitoring.
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- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02858-9
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- Article
Exploring background mutational processes to decipher cancer genetic heterogeneity.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W514, doi. 10.1093/nar/gkx367
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- Article
Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems.
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- Nucleic Acids Research, 2011, v. 39, n. 22, p. 9473, doi. 10.1093/nar/gkr691
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- Article
Low-fidelity DNA synthesis by the L979F mutator derivative of Saccharomyces cerevisiae DNA polymerase ζ.
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- Nucleic Acids Research, 2009, v. 37, n. 11, p. 3774, doi. 10.1093/nar/gkp238
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- Article
Low-fidelity DNA synthesis by human DNA polymerase theta.
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- Nucleic Acids Research, 2008, v. 36, n. 11, p. 3847, doi. 10.1093/nar/gkn310
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Cloning and Functional Analysis of SEL1L Promoter Region, a Pancreas-Specific Gene.
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- DNA & Cell Biology, 2001, v. 20, n. 1, p. 1, doi. 10.1089/10445490150504648
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- Article
Expression of human AID in yeast induces mutations in context similar to the context of somatic hypermutation at G-C pairs in immunoglobulin genes.
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- BMC Immunology, 2005, v. 6, p. 10, doi. 10.1186/1471-2172-6-10
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Involvement of DNA mismatch repair in the maintenance of heterochromatic DNA stability in Saccharomyces cerevisiae.
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- PLoS Genetics, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pgen.1007074
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- Article
Domain mobility in proteins: functional and evolutionary implications.
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- Briefings in Bioinformatics, 2009, v. 10, n. 3, p. 205, doi. 10.1093/bib/bbn057
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- Article
Analysis of evolution of exon-intron structure of eukaryotic genes.
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- Briefings in Bioinformatics, 2005, v. 6, n. 2, p. 118, doi. 10.1093/bib/6.2.118
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- Article
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.
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- Briefings in Bioinformatics, 2004, v. 5, n. 2, p. 131, doi. 10.1093/bib/5.2.131
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- Article
Computational analysis of mutation spectra.
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- Briefings in Bioinformatics, 2003, v. 4, n. 3, p. 210, doi. 10.1093/bib/4.3.210
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- Article
Computer prediction of sites associated with various elements of the nuclear matrix.
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- Briefings in Bioinformatics, 2000, v. 1, n. 1, p. 33, doi. 10.1093/bib/1.1.33
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Phylogenetic analysis of the metazoan carotenoid oxygenase superfamily: a new ancestral gene assemblage of BCO-like (BCOL) proteins.
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- Scientific Reports, 2017, v. 7, n. 1, p. 1, doi. 10.1038/s41598-017-13521-x
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- Article
Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers.
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- Scientific Reports, 2016, p. 38133, doi. 10.1038/srep38133
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- Article
Germline viral 'fossils' guide in silico reconstruction of a mid-Cenozoic era marsupial adeno-associated virus.
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- Scientific Reports, 2016, p. 28965, doi. 10.1038/srep28965
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- Article
Origin and Evolution of Retinoid Isomerization Machinery in Vertebrate Visual Cycle: Hint from Jawless Vertebrates.
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- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049975
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Computational Prediction of Polycomb-Associated Long Non-Coding RNAs.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0044878
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Replication Protein A (RPA) Hampers the Processive Action of APOBEC3G Cytosine Deaminase on Single-Stranded DNA.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024848
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A Dual Origin of the Xist Gene from a Protein-Coding Gene and a Set of Transposable Elements.
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- PLoS ONE, 2008, v. 3, n. 6, p. 1, doi. 10.1371/journal.pone.0002521
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- Article
Analysis of phylogenetically reconstructed mutational spectra in human mitochondrial DNA control region.
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- Human Genetics, 2002, v. 111, n. 1, p. 46, doi. 10.1007/s00439-002-0740-4
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- Article
Nucleotide Weight Matrices Reveal Ubiquitous Mutational Footprints of AID/APOBEC Deaminases in Human Cancer Genomes.
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- Cancers, 2019, v. 11, n. 2, p. 211, doi. 10.3390/cancers11020211
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- Article
Evolution of alternative and constitutive regions of mammalian 5′UTRs.
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- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-162
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- Article
Deletions across the SARS-CoV-2 Genome: Molecular Mechanisms and Putative Functional Consequences of Deletions in Accessory Genes.
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- Microorganisms, 2023, v. 11, n. 1, p. 229, doi. 10.3390/microorganisms11010229
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- Article
Stable Intronic Sequences and Exon Skipping Events in the Human RPE65 Gene: Analysis of Expression in Retinal Pigment Epithelium Cells and Cell Culture Models.
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- Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00634
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- Article
Conservation versus parallel gains in intron evolution.
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- Nucleic Acids Research, 2005, v. 33, n. 17, p. 5713, doi. 10.1093/nar/gki860
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- Article
Evolutionary conservation suggests a regulatory function of AUG triplets in 5′-UTRs of eukaryotic genes.
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- Nucleic Acids Research, 2005, v. 33, n. 17, p. 5512, doi. 10.1093/nar/gki847
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- Article
Conservation versus parallel gains in intron evolution.
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- Nucleic Acids Research, 2005, v. 33, n. 6, p. 1741, doi. 10.1093/nar/gki316
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- Article
Prevalence of intron gain over intron loss in the evolution of paralogous gene families.
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- Nucleic Acids Research, 2004, v. 32, n. 12, p. 3724, doi. 10.1093/nar/gkh686
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- Article
Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals.
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- Nucleic Acids Research, 2004, v. 32, n. 5, p. 1774, doi. 10.1093/nar/gkh313
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- Article
Congruent evolution of different classes of non‐coding DNA in prokaryotic genomes.
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- Nucleic Acids Research, 2002, v. 30, n. 19, p. 4264, doi. 10.1093/nar/gkf549
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- Article
Connected gene neighborhoods in prokaryotic genomes.
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- Nucleic Acids Research, 2002, v. 30, n. 10, p. 2212, doi. 10.1093/nar/30.10.2212
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A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
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- Nucleic Acids Research, 2002, v. 30, n. 2, p. 482, doi. 10.1093/nar/30.2.482
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- Article
The 29-nucleotide deletion in SARS-CoV: truncated versions of ORF8 are under purifying selection.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09482-3
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- Article
The Vast, Conserved Mammalian lincRNome.
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- PLoS Computational Biology, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.pcbi.1002917
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- Article
A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes.
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- PLoS Computational Biology, 2011, v. 7, n. 9, p. 1, doi. 10.1371/journal.pcbi.1002150
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- Article
Modulation of mutagenesis in eukaryotes by DNA replication fork dynamics and quality of nucleotide pools.
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- Environmental & Molecular Mutagenesis, 2012, v. 53, n. 9, p. 699, doi. 10.1002/em.21735
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- Article
Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase.
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- Nature Immunology, 2007, v. 8, n. 6, p. 647, doi. 10.1038/ni1463
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- Article
Response 1 to 'Smaller role for pol η?'.
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- Nature Immunology, 2001, v. 2, n. 11, p. 983, doi. 10.1038/ni1101-983
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- Article
Somatic mutation hotspots correlate with DNA polymerase η error spectrum.
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- Nature Immunology, 2001, v. 2, n. 6, p. 530, doi. 10.1038/88732
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- Article
Frequent Recombination Events in Leishmania donovani: Mining Population Data.
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- Pathogens, 2020, v. 9, n. 7, p. 572, doi. 10.3390/pathogens9070572
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Mutational signatures and mutable motifs in cancer genomes.
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- Briefings in Bioinformatics, 2018, v. 19, n. 6, p. 1085, doi. 10.1093/bib/bbx049
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- Article
AID and APOBECs as Multifaceted Intrinsic Virus-Restricting Factors: Emerging Concepts in the Light of COVID-19.
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- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.690416
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- Article
Genome-Wide Changes in Protein Translation Efficiency Are Associated with Autism.
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- Genome Biology & Evolution, 2018, v. 10, n. 8, p. 1902, doi. 10.1093/gbe/evy146
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Gene Family Level Comparative Analysis of Gene Expression in Mammals Validates the Ortholog Conjecture.
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- Genome Biology & Evolution, 2014, v. 6, n. 4, p. 754, doi. 10.1093/gbe/evu051
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- Article