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The biogeography of the mucosa-associated microbiome in health and disease.
- Published in:
- Frontiers in Microbiology, 2024, p. 01, doi. 10.3389/fmicb.2024.1454910
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- Article
Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00731
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- Article
Anaerobic oxidation of propane coupled to nitrate reduction by a lineage within the class Symbiobacteriia.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33872-y
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- Article
Redefining the sponge-symbiont acquisition paradigm: sponge microbes exhibit chemotaxis towards host-derived compounds.
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- Environmental Microbiology Reports, 2017, v. 9, n. 6, p. 750, doi. 10.1111/1758-2229.12591
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- Article
Genetic Exchange Across a Species Boundary in the Archaeal Genus Ferroplasma.
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- Genetics, 2007, v. 177, n. 1, p. 407, doi. 10.1534/genetics.107.072892
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- Article
GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes.
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- Nucleic Acids Research, 2018, v. 46, n. 10, p. 1, doi. 10.1093/nar/gky174
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- Article
Crass: identification and reconstruction of CRISPR from unassembled metagenomic data.
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- Nucleic Acids Research, 2013, v. 41, n. 10, p. e105, doi. 10.1093/nar/gkt183
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- Article
Grinder: a versatile amplicon and shotgun sequence simulator.
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- Nucleic Acids Research, 2012, v. 40, n. 13, p. e94, doi. 10.1093/nar/gks251
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- Article
Grinder: a versatile amplicon and shotgun sequence simulator.
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- Nucleic Acids Research, 2012, v. 40, n. 12, p. e94, doi. 10.1093/nar/gks251
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- Article
Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25983-9
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- Article
Accelerating microbial iron cycling promotes re‐cementation of surface crusts in iron ore regions.
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- Microbial Biotechnology, 2020, v. 13, n. 6, p. 1960, doi. 10.1111/1751-7915.13646
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- Article
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes.
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- Nature Biotechnology, 2013, v. 31, n. 6, p. 533, doi. 10.1038/nbt.2579
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- Article
Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 9, p. 1916, doi. 10.1038/ismej.2015.3
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- Article
Chemotaxis by natural populations of coral reef bacteria.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 8, p. 1764, doi. 10.1038/ismej.2014.261
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- Article
Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 10, p. 2015, doi. 10.1038/ismej.2014.50
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- Article
Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 8, p. 1661, doi. 10.1038/ismej.2013.47
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- Article
Coral reef invertebrate microbiomes correlate with the presence of photosymbionts.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1459, doi. 10.1038/ismej.2013.71
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- Article
Coral reef invertebrate microbiomes correlate with the presence of photosymbionts.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1452, doi. 10.1038/ismej.2012.172
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- Article
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 6, p. 999, doi. 10.1038/ismej.2010.189
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- Article
Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 10, p. 1352, doi. 10.1038/ismej.2010.73
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- Article
Fast, accurate error-correction of amplicon pyrosequences using Acacia.
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- Nature Methods, 2012, v. 9, n. 5, p. 425, doi. 10.1038/nmeth.1990
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- Article
Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes.
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- Scientific Reports, 2016, p. 39114, doi. 10.1038/srep39114
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- Article
A genome-centric view of the role of the Acropora kenti microbiome in coral health and resilience.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46905-5
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- Publication type:
- Article
Multi-heme cytochrome-mediated extracellular electron transfer by the anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens'.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41847-w
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- Article
Activation of the Jasmonic Acid Plant Defence Pathway Alters the Composition of Rhizosphere Bacterial Communities.
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- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056457
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- Article
Phage Encoded H-NS: A Potential Achilles Heel in the Bacterial Defence System.
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- PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0020095
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- Article
Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12574-y
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- Article
Strainer: software for analysis of population variation in communitygenomic datasets.
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- BMC Bioinformatics, 2007, v. 8, p. 398, doi. 10.1186/1471-2105-8-398
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- Article
Metatranscriptomics reveals unique microbial small RNAs in the ocean’s water column.
- Published in:
- Nature, 2009, v. 459, n. 7244, p. 266, doi. 10.1038/nature08055
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- Article
Microbiology: Metagenomics.
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- 2008
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- Question & Answer
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.
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- 2007
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- Publication type:
- Letter
Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data.
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- PLoS Computational Biology, 2013, v. 9, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003031
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- Article
Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea.
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- PLoS Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1371/journal.pbio.3001508
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- Article
Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion.
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- Environmental Microbiology, 2016, v. 18, n. 9, p. 3144, doi. 10.1111/1462-2920.13382
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- Article
Metagenomic and metaproteomic analyses of Accumulibacter phosphatis-enriched floccular and granular biofilm.
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- Environmental Microbiology, 2016, v. 18, n. 1, p. 273, doi. 10.1111/1462-2920.13019
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- Article
Expanding our view of genomic diversity in C andidatus Accumulibacter clades.
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- Environmental Microbiology, 2015, v. 17, n. 5, p. 1574, doi. 10.1111/1462-2920.12582
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- Article
Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses.
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- Environmental Microbiology, 2010, v. 12, n. 1, p. 222, doi. 10.1111/j.1462-2920.2009.02062.x
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- Article
Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses.
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- Environmental Microbiology, 2008, v. 10, n. 1, p. 200, doi. 10.1111/j.1462-2920.2007.01444.x
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- Article
Discovery of a novel methanogen prevalent in thawing permafrost.
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- Nature Communications, 2014, v. 5, n. 2, p. 3212, doi. 10.1038/ncomms4212
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- Article
Characterization of a highly efficient antibiotic-degrading metallo-β-lactamase obtained from an uncultured member of a permafrost community.
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- Metallomics, 2017, v. 9, n. 8, p. 1157, doi. 10.1039/c7mt00195a
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- Article
An Expanded Genomic Representation of the Phylum Cyanobacteria.
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- Genome Biology & Evolution, 2014, v. 6, n. 5, p. 1031, doi. 10.1093/gbe/evu073
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- Article
Community structure and metabolism through reconstruction of microbial genomes from the environment.
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- Nature, 2004, v. 428, n. 6978, p. 37, doi. 10.1038/nature02340
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- Article
Draft genome sequence of two "Candidatus Intestinicoccus colisanans" strains isolated from faeces of healthy humans.
- Published in:
- BMC Research Notes, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13104-023-06447-3
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- Article
Methane dynamics regulated by microbial community response to permafrost thaw.
- Published in:
- Nature, 2014, v. 514, n. 7523, p. 478, doi. 10.1038/nature13798
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- Article
Erratum: Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage.
- Published in:
- Nature, 2013, v. 501, n. 7468, p. 578, doi. 10.1038/nature12619
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- Article
Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage.
- Published in:
- Nature, 2013, v. 500, n. 7464, p. 567, doi. 10.1038/nature12375
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- Publication type:
- Article
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research.
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- PeerJ, 2020, p. 1, doi. 10.7717/peerj.9467
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- Article
Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion.
- Published in:
- PeerJ, 2017, n. 11, p. 1, doi. 10.7717/peerj.4075
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- Article
A laboratory investigation of interactions between denitrifying anaerobic methane oxidation (DAMO) and anammox processes in anoxic environments.
- Published in:
- Scientific Reports, 2015, p. 8706, doi. 10.1038/srep08706
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- Article
Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters.
- Published in:
- Scientific Reports, 2015, p. 8496, doi. 10.1038/srep08496
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- Article