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Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01009
By:
- Tra, Tam T. T.;
- Mangenot, Sophie;
- Magdelenat, Ghislaine;
- Payen, Emilie;
- Rouy, Zoé;
- Belahbib, Hassiba;
- Grail, Barry M.;
- Johnson, D. Barrie;
- Bonnefoy, Violaine;
- Talla, Emmanuel
Publication type:
Article
Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 10, p. 1985, doi. 10.1038/ismej.2013.90
By:
- Goudenège, David;
- Labreuche, Yannick;
- Krin, Evelyne;
- Ansquer, Dominique;
- Mangenot, Sophie;
- Calteau, Alexandra;
- Médigue, Claudine;
- Mazel, Didier;
- Polz, Martin F;
- Le Roux, Frédérique
Publication type:
Article
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis.
Published in:
Nature Genetics, 2013, v. 45, n. 2, p. 172, doi. 10.1038/ng.2517
By:
- Supply, Philip;
- Marceau, Michael;
- Mangenot, Sophie;
- Roche, David;
- Rouanet, Carine;
- Khanna, Varun;
- Majlessi, Laleh;
- Criscuolo, Alexis;
- Tap, Julien;
- Pawlik, Alexandre;
- Fiette, Laurence;
- Orgeur, Mickael;
- Fabre, Michel;
- Parmentier, Cécile;
- Frigui, Wafa;
- Simeone, Roxane;
- Boritsch, Eva C;
- Debrie, Anne-Sophie;
- Willery, Eve;
- Walker, Danielle
Publication type:
Article
Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles.
Published in:
PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024356
By:
- Remenant, Benoît;
- de Cambiaire, Jean-Charles de Cambiaire;
- Cellier, Gilles;
- Jacobs, Jonathan M.;
- Mangenot, Sophie;
- Barbe, Valérie;
- Lajus, Aurélie;
- Vallenet, David;
- Medigue, Claudine;
- Fegan, Mark;
- Allen, Caitilyn;
- Prior, Philippe
Publication type:
Article
Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources.
Published in:
PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005584
By:
- Vuilleumier, Stéphane;
- Chistoserdova, Ludmila;
- Ming-Chun Lee;
- Bringel, Françoise;
- Lajus, Aurélie;
- Yang Zhou;
- Gourion, Benjamin;
- Barbe, Valérie;
- Chang, Jean;
- Cruveiller, Stéphane;
- Dossat, Carole;
- Gillett, Will;
- Gruffaz, Christelle;
- Haugen, Eric;
- Hourcade, Edith;
- Levy, Ruth;
- Mangenot, Sophie;
- Muller, Emilie;
- Nadalig, Thierry;
- Pagni, Marco
Publication type:
Article
Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles.
Published in:
PLoS ONE, 2008, v. 3, n. 3, p. 1, doi. 10.1371/journal.pone.0001805
By:
- Vallenet, David;
- Nordmann, Patrice;
- Barbe, Valérie;
- Poirel, Laurent;
- Mangenot, Sophie;
- Bataille, Elodie;
- Dossat, Carole;
- Gas, Shahinaz;
- Kreimeyer, Annett;
- Lenoble, Patricia;
- Oztas, Sophie;
- Poulain, Julie;
- Segurens, Béatrice;
- Robert, Catherine;
- Abergel, Chantal;
- Claverie, Jean-Michel;
- Raoult, Didier;
- Médigue, Claudine;
- Weissenbach, Jean;
- Cruveiller, Stéphane
Publication type:
Article
The complete genome sequence of Xanthomonas albilineansprovides new insights into the reductive genome evolution of thexylem-limited Xanthomonadaceae.
Published in:
BMC Genomics, 2009, v. 10, p. 616, doi. 10.1186/1471-2164-10-616
By:
- Pieretti, Isabelle;
- Royer, Monique;
- Barbe, Valérie;
- Carrere, Sébastien;
- Koebnik, Ralf;
- Cociancich, Stéphane;
- Couloux, Arnaud;
- Darrasse, Armelle;
- Gouzy, Jérôme;
- Jacques, Marie-Agnès;
- Lauber, Emmanuelle;
- Manceau, Charles;
- Mangenot, Sophie;
- Poussier, Stéphane;
- Segurens, Béatrice;
- Szurek, Boris;
- Verdier, Valérie;
- Arlat, Matthieu;
- Rott, Philippe
Publication type:
Article
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria.
Published in:
Nature, 2010, v. 464, n. 7288, p. 543, doi. 10.1038/nature08883
By:
- Ettwig, Katharina F.;
- Butler, Margaret K.;
- Le Paslier, Denis;
- Pelletier, Eric;
- Mangenot, Sophie;
- Kuypers, Marcel M. M.;
- Schreiber, Frank;
- Dutilh, Bas E.;
- Zedelius, Johannes;
- de Beer, Dirk;
- Gloerich, Jolein;
- Wessels, Hans J. C. T.;
- van Alen, Theo;
- Luesken, Francisca;
- Wu, Ming L.;
- van de Pas-Schoonen, Katinka T.;
- Op den Camp, Huub J. M.;
- Janssen-Megens, Eva M.;
- Francoijs, Kees-Jan;
- Stunnenberg, Henk
Publication type:
Article
Deciphering the evolution and metabolism of an anammox bacterium from a community genome.
Published in:
2006
By:
- Strous, Marc;
- Pelletier, Eric;
- Mangenot, Sophie;
- Rattei, Thomas;
- Lehner, Angelika;
- Taylor, Michael W.;
- Horn, Matthias;
- Daims, Holger;
- Bartol-Mavel, Delphine;
- Wincker, Patrick;
- Barbe, Valérie;
- Fonknechten, Nuria;
- Vallenet, David;
- Segurens, Béatrice;
- Schenowitz-Truong, Chantal;
- Médigue, Claudine;
- Collingro, Astrid;
- Snel, Berend;
- Dutilh, Bas E.;
- Op den Camp, Huub J. M.
Publication type:
Letter
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of P roteobacteria.
Published in:
Environmental Microbiology, 2017, v. 19, n. 3, p. 1103, doi. 10.1111/1462-2920.13637
By:
- Ji, Boyang;
- Zhang, Sheng ‐ Da;
- Zhang, Wei ‐ Jia;
- Rouy, Zoe;
- Alberto, François;
- Santini, Claire ‐ Lise;
- Mangenot, Sophie;
- Gagnot, Séverine;
- Philippe, Nadège;
- Pradel, Nathalie;
- Zhang, Lichen;
- Tempel, Sébastien;
- Li, Ying;
- Médigue, Claudine;
- Henrissat, Bernard;
- Coutinho, Pedro M.;
- Barbe, Valérie;
- Talla, Emmanuel;
- Wu, Long ‐ Fei
Publication type:
Article
A single regulatory gene is sufficient to alter Vibrio aestuarianus pathogenicity in oysters.
Published in:
Environmental Microbiology, 2015, v. 17, n. 11, p. 4189, doi. 10.1111/1462-2920.12699
By:
- Goudenège, David;
- Travers, Marie Agnès;
- Lemire, Astrid;
- Petton, Bruno;
- Haffner, Philippe;
- Labreuche, Yannick;
- Tourbiez, Delphine;
- Mangenot, Sophie;
- Calteau, Alexandra;
- Mazel, Didier;
- Nicolas, Jean Louis;
- Jacq, Annick;
- Le roux, Frédérique
Publication type:
Article
Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain.
Published in:
Environmental Microbiology, 2014, v. 16, n. 2, p. 525, doi. 10.1111/1462-2920.12180
By:
- Ji, Boyang;
- Zhang, Sheng‐Da;
- Arnoux, Pascal;
- Rouy, Zoe;
- Alberto, François;
- Philippe, Nadège;
- Murat, Dorothée;
- Zhang, Wei‐Jia;
- Rioux, Jean‐Baptiste;
- Ginet, Nicolas;
- Sabaty, Monique;
- Mangenot, Sophie;
- Pradel, Nathalie;
- Tian, Jiesheng;
- Yang, Jing;
- Zhang, Lichen;
- Zhang, Wenyan;
- Pan, Hongmiao;
- Henrissat, Bernard;
- Coutinho, Pedro M.
Publication type:
Article
Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids.
Published in:
Environmental Microbiology, 2011, v. 13, n. 2, p. 296, doi. 10.1111/j.1462-2920.2010.02329.x
By:
- Le Roux, Frédérique;
- Labreuche, Yannick;
- Davis, Brigid M.;
- Iqbal, Naeem;
- Mangenot, Sophie;
- Goarant, Cyrille;
- Mazel, Didier;
- Waldor, Matthew K.
Publication type:
Article
Organization and evolution of transposable elements along the bread wheat chromosome 3B.
Published in:
Genome Biology, 2014, v. 15, n. 12, p. 88, doi. 10.1186/s13059-014-0546-4
By:
- Daron, Josquin;
- Glover, Natasha;
- Pingault, Lise;
- Theil, Sébastien;
- Jamilloux, Véronique;
- Paux, Etienne;
- Barbe, Valérie;
- Mangenot, Sophie;
- Alberti, Adriana;
- Wincker, Patrick;
- Quesneville, Hadi;
- Feuillet, Catherine;
- Choulet, Frédéric
Publication type:
Article
Evolution of the Terminal Regions of the Streptomyces Linear Chromosome.
Published in:
Molecular Biology & Evolution, 2006, v. 23, n. 12, p. 2361, doi. 10.1093/molbev/msl108
By:
- Choulet, Frédéric;
- Aigle, Bertrand;
- Gallois, Alexandre;
- Mangenot, Sophie;
- Gerbaud, Claude;
- Truong, Chantal;
- Francou, François-Xavier;
- Fourrier, Céline;
- Guérineau, Michel;
- Decaris, Bernard;
- Barbe, Valérie;
- Pernodet, Jean-Luc;
- Leblond, Pierre
Publication type:
Article
The decoupled evolution of the organellar genomes of Silene nutans leads to distinct roles in the speciation process.
Published in:
New Phytologist, 2023, v. 239, n. 2, p. 766, doi. 10.1111/nph.18966
By:
- Postel, Zoé;
- Sloan, Daniel B.;
- Gallina, Sophie;
- Godé, Cécile;
- Schmitt, Eric;
- Mangenot, Sophie;
- Drouard, Laurence;
- Varré, Jean‐Stéphane;
- Touzet, Pascal
Publication type:
Article
Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs.
Published in:
Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00227
By:
- Dias, Graciela M.;
- Bidault, Adeline;
- Le Chevalier, Patrick;
- Choquet, Gwenaëlle;
- Der Sarkissian, Clio;
- Orlando, Ludovic;
- Medigue, Claudine;
- Barbe, Valerie;
- Mangenot, Sophie;
- Thompson, Cristiane C.;
- Thompson, Fabiano L.;
- Jacq, Annick;
- Pichereau, Vianney;
- Paillard, Christine
Publication type:
Article
Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.
Published in:
Extremophiles, 2016, v. 20, n. 3, p. 301, doi. 10.1007/s00792-016-0822-1
By:
- Zhang, Sheng-Da;
- Santini, Claire-Lise;
- Zhang, Wei-Jia;
- Barbe, Valérie;
- Mangenot, Sophie;
- Guyomar, Charlotte;
- Garel, Marc;
- Chen, Hai-Tao;
- Li, Xue-Gong;
- Yin, Qun-Jian;
- Zhao, Yuan;
- Armengaud, Jean;
- Gaillard, Jean-Charles;
- Martini, Séverine;
- Pradel, Nathalie;
- Vidaud, Claude;
- Alberto, François;
- Médigue, Claudine;
- Tamburini, Christian;
- Wu, Long-Fei
Publication type:
Article
Contrasted Patterns of Molecular Evolution in Dominant and Recessive Self-Incompatibility Haplotypes in Arabidopsis.
Published in:
PLoS Genetics, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pgen.1002495
By:
- Goubet, Pauline M.;
- Bergès, Hélène;
- Bellec, Arnaud;
- Prat, Elisa;
- Helmstetter, Nicolas;
- Mangenot, Sophie;
- Gallina, Sophie;
- Holl, Anne-Catherine;
- Fobis-Loisy, Isabelle;
- Vekemans, Xavier;
- Castric, Vincent
Publication type:
Article
Azospirillum Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments.
Published in:
PLoS Genetics, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pgen.1002430
By:
- Wisniewski-Dyé, Florence;
- Borziak, Kirill;
- Khalsa-Moyers, Gurusahai;
- Alexandre, Gladys;
- Sukharnikov, Leonid O.;
- Wuichet, Kristin;
- Hurst, Gregory B.;
- McDonald, W. Hayes;
- Robertson, Jon S.;
- Barbe, Valérie;
- Calteau, Alexandra;
- Rouy, Zoé;
- Mangenot, Sophie;
- Prigent-Combaret, Claire;
- Normand, Philippe;
- Boyer, Mickaël;
- Siguier, Patricia;
- Dessaux, Yves;
- Elmerich, Claudine;
- Condemine, Guy
Publication type:
Article
Being Pathogenic, Plastic, and Sexual while Living with a Nearly Minimal Bacterial Genome.
Published in:
PLoS Genetics, 2007, v. 3, n. 5, p. e75, doi. 10.1371/journal.pgen.0030075
By:
- Sirand-Pugnet, Pascal;
- Lartigue, Carole;
- Marenda, Marc;
- Jacob, Daniel;
- Barré, Aurlien;
- Barbe, Valérie;
- Schenowitz, Chantal;
- Mangenot, Sophie;
- Couloux, Arnaud;
- Segurens, Beatrice;
- De Daruvar, Antoine;
- Blanchard, Alain;
- Citti, Christine
Publication type:
Article
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii.
Published in:
PLoS Genetics, 2006, v. 2, n. 1, p. e7, doi. 10.1371/journal.pgen.0020007
By:
- Fournier, Pierre-Edouard;
- Vallenet, David;
- Barbe, Valérie;
- Audic, Stéphane;
- Ogata, Hiroyuki;
- Poirel, Laurent;
- Richet, Hervé;
- Robert, Catherine;
- Mangenot, Sophie;
- Abergel, Chantal;
- Nordmann, Patrice;
- Weissenbach, Jean;
- Raoult, Didier;
- Claverie, Jean-Michel;
- Matic, Ivan
Publication type:
Article
Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 891, doi. 10.1186/1471-2164-15-891
By:
- Grandaubert, Jonathan;
- Lowe, Rohan G. T.;
- Soyer, Jessica L.;
- Schoch, Conrad L.;
- Van de Wouw, Angela P.;
- Fudal, Isabelle;
- Robbertse, Barbara;
- Lapalu, Nicolas;
- Links, Matthew G.;
- Ollivier, Bénédicte;
- Linglin, Juliette;
- Barbe, Valérie;
- Mangenot, Sophie;
- Cruaud, Corinne;
- Borhan, Hossein;
- Howlett, Barbara J.;
- Balesdent, Marie-Hélène;
- Rouxel, Thierry
Publication type:
Article
The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen's lifestyle.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-286
By:
- Zoropogui, Anthony;
- Pujic, Petar;
- Normand, Philippe;
- Barbe, Valérie;
- Belli, Patrick;
- Graindorge, Arnault;
- Roche, David;
- Vallenet, David;
- Mangenot, Sophie;
- Boiron, Patrick;
- Rodriguez-Nava, Véronica;
- Ribun, Sebastien;
- Richard, Yves;
- Cournoyer, Benoit;
- Blaha, Didier
Publication type:
Article
Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-252
By:
- Rosinski-Chupin, Isabelle;
- Sauvag, Elisabeth;
- Mairey, Barbara;
- Mangenot, Sophie;
- Ma, Laurence;
- Da Cunha, Violette;
- Rusniok, Christophe;
- Bouchier, Christiane;
- Barbe, Valérie;
- Glaser, Philippe
Publication type:
Article
Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 658, doi. 10.1186/1471-2164-13-658
By:
- Pieretti, Isabelle;
- Royer, Monique;
- Barbe, Val�rie;
- Carrere, S�bastien;
- Koebnik, Ralf;
- Couloux, Arnaud;
- Darrasse, Armelle;
- Gouzy, J�r�me;
- Jacques, Marie-Agn�s;
- Lauber, Emmanuelle;
- Manceau, Charles;
- Mangenot, Sophie;
- Poussier, St�phane;
- Segurens, B�atrice;
- Szurek, Boris;
- Verdier, Val�rie;
- Arlat, Matthieu;
- Gabriel, Dean W.;
- Rott, Philippe;
- Cociancich, St�phane
Publication type:
Article
Genomes of three tomato pathogens within theRalstonia solanacearum species complex revealsignificant evolutionary divergence.
Published in:
BMC Genomics, 2010, v. 11, p. 379, doi. 10.1186/1471-2164-11-379
By:
- Remenant, Benoît;
- Coupat-Goutaland, Bénédicte;
- Guidot, Alice;
- Cellier, Gilles;
- Wicker, Emmanuel;
- Allen, Caitilyn;
- Fegan, Mark;
- Pruvost, Olivier;
- Elbaz, Mounira;
- Calteau, Alexandra;
- Salvignol, Gregory;
- Mornico, Damien;
- Mangenot, Sophie;
- Barbe, Valérie;
- Médigue, Claudine;
- Prior, Philippe
Publication type:
Article
Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity.
Published in:
BMC Genomics, 2010, v. 11, p. 1, doi. 10.1186/1471-2164-11-86
By:
- Nouvel, Laurent X;
- Sirand-Pugnet, Pascal;
- Marenda, Marc S;
- Sagné, Eveline;
- Barbe, Valérie;
- Mangenot, Sophie;
- Schenowitz, Chantal;
- Jacob, Daniel;
- Barré, Aurélien;
- Claverol, Stéphane;
- Blanchard, Alain;
- Citti, Christine
Publication type:
Article
Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence.
Published in:
Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03939-z
By:
- Guérin, Nina;
- Ciccarella, Marta;
- Flamant, Elisa;
- Frémont, Paul;
- Mangenot, Sophie;
- Istace, Benjamin;
- Noel, Benjamin;
- Belser, Caroline;
- Bertrand, Laurie;
- Labadie, Karine;
- Cruaud, Corinne;
- Romac, Sarah;
- Bachy, Charles;
- Gachenot, Martin;
- Pelletier, Eric;
- Alberti, Adriana;
- Jaillon, Olivier;
- Wincker, Patrick;
- Aury, Jean-Marc;
- Carradec, Quentin
Publication type:
Article
TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14508-5
By:
- Bottai, Daria;
- Frigui, Wafa;
- Sayes, Fadel;
- Di Luca, Mariagrazia;
- Spadoni, Dalila;
- Pawlik, Alexandre;
- Zoppo, Marina;
- Orgeur, Mickael;
- Khanna, Varun;
- Hardy, David;
- Mangenot, Sophie;
- Barbe, Valerie;
- Medigue, Claudine;
- Ma, Laurence;
- Bouchier, Christiane;
- Tavanti, Arianna;
- Larrouy-Maumus, Gerald;
- Brosch, Roland
Publication type:
Article

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