Works matching AU Shiu, Anne

Results: 18

The Cyclohedron Test for Finding Periodic Genes in Time Course Expression Studies.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2007, v. 6, n. 1, p. 1, doi. 10.2202/1544-6115.1286

By:

Morton, Jason;
Pachter, Lior;
Shiu, Anne;
Sturmfels, Bernd

Publication type:

Article

Identifiability of linear compartmental models: the effect of moving inputs, outputs, and leaks.

Published in:

Linear & Multilinear Algebra, 2022, v. 70, n. 14, p. 2782, doi. 10.1080/03081087.2020.1812497

By:

Gerberding, Seth;
Obatake, Nida;
Shiu, Anne

Publication type:

Article

Three Counter-Examples on Semi-Graphoids.

Published in:

Combinatorics, Probability & Computing, 2008, v. 17, n. 2, p. 239, doi. 10.1017/S0963548307008838

By:

RAYMOND HEMMECKE;
JASON MORTON;
ANNE SHIU;
BERND STURMFELS;
OLIVER WIENAND

Publication type:

Article

Sign Conditions for Injectivity of Generalized Polynomial Maps with Applications to Chemical Reaction Networks and Real Algebraic Geometry.

Published in:

Foundations of Computational Mathematics, 2016, v. 16, n. 1, p. 69, doi. 10.1007/s10208-014-9239-3

By:

Müller, Stefan;
Feliu, Elisenda;
Regensburger, Georg;
Conradi, Carsten;
Shiu, Anne;
Dickenstein, Alicia

Publication type:

Article

Deficiency of chemical reaction networks: the effect of operations that preserve multistationarity and periodic orbits.

Published in:

Discrete & Continuous Dynamical Systems - Series B, 2025, v. 30, n. 5, p. 1, doi. 10.3934/dcdsb.2024157

By:

Gutierrez, Awildo;
Leake, Elijah;
Rivas-Sobie, Caelyn;
Garcia, Jordy Lopez;
Shiu, Anne

Publication type:

Article

Nondegenerate multistationarity in small reaction networks.

Published in:

Discrete & Continuous Dynamical Systems - Series B, 2019, v. 24, n. 6, p. 2683, doi. 10.3934/dcdsb.2018270

By:

Shiu, Anne;
Wolff, Timo de

Publication type:

Article

Dynamics of ERK regulation in the processive limit.

Published in:

Journal of Mathematical Biology, 2021, v. 82, n. 4, p. 1, doi. 10.1007/s00285-021-01574-6

By:

Conradi, Carsten;
Obatake, Nida;
Shiu, Anne;
Tang, Xiaoxian

Publication type:

Article

Joining and decomposing reaction networks.

Published in:

Journal of Mathematical Biology, 2020, v. 80, n. 6, p. 1683, doi. 10.1007/s00285-020-01477-y

By:

Gross, Elizabeth;
Harrington, Heather;
Meshkat, Nicolette;
Shiu, Anne

Publication type:

Article

Oscillations and bistability in a model of ERK regulation.

Published in:

Journal of Mathematical Biology, 2019, v. 79, n. 4, p. 1515, doi. 10.1007/s00285-019-01402-y

By:

Obatake, Nida;
Shiu, Anne;
Tang, Xiaoxian;
Torres, Angélica

Publication type:

Article

Revisiting a synthetic intracellular regulatory network that exhibits oscillations.

Published in:

Journal of Mathematical Biology, 2019, v. 78, n. 7, p. 2341, doi. 10.1007/s00285-019-01346-3

By:

Tyler, Jonathan;
Shiu, Anne;
Walton, Jay

Publication type:

Article

Comparison of Pattern Detection Methods in Microarray Time Series of the Segmentation Clock.

Published in:

PLoS ONE, 2008, v. 3, n. 8, p. 1, doi. 10.1371/journal.pone.0002856

By:

Dequéant, Mary-Lee;
Ahnert, Sebastian;
Edelsbrunner, Herbert;
Fink, Thomas M. A.;
Glynn, Earl F.;
Hattem, Gaye;
Kudlicki, Andrzej;
Mileyko, Yuriy;
Morton, Jason;
Mushegian, Arcady R.;
Pachter, Lior;
Rowicka, Maga;
Shiu, Anne;
Sturmfels, Bernd;
Pourquié, Olivier

Publication type:

Article

Atoms of multistationarity in chemical reaction networks.

Published in:

Journal of Mathematical Chemistry, 2013, v. 51, n. 1, p. 153, doi. 10.1007/s10910-012-0072-0

By:

Joshi, Badal;
Shiu, Anne

Publication type:

Article

Gröbner bases of neural ideals.

Published in:

International Journal of Algebra & Computation, 2018, v. 28, n. 4, p. 553, doi. 10.1142/S0218196718500261

By:

Garcia, Rebecca;
Puente, Luis David García;
Kruse, Ryan;
Liu, Jessica;
Miyata, Dane;
Petersen, Ethan;
Phillipson, Kaitlyn;
Shiu, Anne

Publication type:

Article

Emergence of Oscillations in a Mixed-Mechanism Phosphorylation System.

Published in:

Bulletin of Mathematical Biology, 2019, v. 81, n. 6, p. 1829, doi. 10.1007/s11538-019-00580-6

By:

Conradi, Carsten;
Mincheva, Maya;
Shiu, Anne

Publication type:

Article

Multistationarity in Structured Reaction Networks.

Published in:

Bulletin of Mathematical Biology, 2019, v. 81, n. 5, p. 1527, doi. 10.1007/s11538-019-00572-6

By:

Dickenstein, Alicia;
Millán, Mercedes Pérez;
Shiu, Anne;
Tang, Xiaoxian

Publication type:

Article

A Global Convergence Result for Processive Multisite Phosphorylation Systems.

Published in:

Bulletin of Mathematical Biology, 2015, v. 77, n. 1, p. 126, doi. 10.1007/s11538-014-0054-4

By:

Conradi, Carsten;
Shiu, Anne

Publication type:

Article

Chemical Reaction Systems with Toric Steady States.

Published in:

Bulletin of Mathematical Biology, 2012, v. 74, n. 5, p. 1027, doi. 10.1007/s11538-011-9685-x

By:

Pérez Millán, Mercedes;
Dickenstein, Alicia;
Shiu, Anne;
Conradi, Carsten

Publication type:

Article

Siphons in Chemical Reaction Networks.

Published in:

Bulletin of Mathematical Biology, 2010, v. 72, n. 6, p. 1448, doi. 10.1007/s11538-010-9502-y

By:

Shiu, Anne;
Sturmfels, Bernd

Publication type:

Article